BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT1G77765.4
Length=837
Score E
Sequences producing significant alignments: (Bits) Value
Ahg476940 jgi|Araly1|476940|fgenesh2_kg.2__2070__AT1G77765.2 743 0.0
> Ahg476940 jgi|Araly1|476940|fgenesh2_kg.2__2070__AT1G77765.2
Length=734
Score = 743 bits (402), Expect = 0.0
Identities = 447/468 (96%), Gaps = 6/468 (1%)
Strand=Plus/Plus
Query 20 ATTATCAAAGAAATGCAAATGGGATATGAAAATCCAAGGACTATGTACGGTGTGATCATC 79
|||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct 1 ATTATCAAAGAAATGCAAATGGGATATGAAAATCCAAGGATTATGTACGGTGTGATCATC 60
Query 80 ACCGTGTACGTTGATCGTCAAACGACGACCGTCCGATCATTTCAAGGGAGACAGAAGAAT 139
|||||||||||||||||||||||||||||||||||||||||||||||||||| ||| |||
Sbjct 61 ACCGTGTACGTTGATCGTCAAACGACGACCGTCCGATCATTTCAAGGGAGACGGAAAAAT 120
Query 140 GATGAAGGGGAGAGATTCATTGAACGGACGTGGAAGCGTGGGATCGGAAAGATACGCGGT 199
||||||||||||||||||||||||||||||||||||| |||||||||||||||||| |||
Sbjct 121 GATGAAGGGGAGAGATTCATTGAACGGACGTGGAAGCCTGGGATCGGAAAGATACGTGGT 180
Query 200 TATGATCGGAGAGCGAATCTGTTAGCTTATATTCGTCAGAAGAGGGCCGAGAGTCTCACC 259
|||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct 181 TATGATCGGAGAGCGAATCTGTTAGCTTATATTCGTCAGATGAGGGCCGAGAGTCTCACC 240
Query 260 GGAGATTCGAAATGCGACGTCGTAGAGAGTGACAACAAGCCTGAACGGCTGAGTCCGAGT 319
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 241 GGAGATTCGAAATGCGACGTCGTAGAGAGTGACAACAAGCCTGAACGGCTGAGTCCGAGT 300
Query 320 CCGAAGAAGAAGAAAAGAAGGTGGATAAGAAGAATGATGAGTAAGTTCCGGTTACCGTTT 379
||||||||||| || ||||||||||||||| ||||||||||||||||||||||||||||
Sbjct 301 CCGAAGAAGAA-AA--GAAGGTGGATAAGAAAAATGATGAGTAAGTTCCGGTTACCGTTT 357
Query 380 CTTCGGCCATTTCGCCGGAAAAATAGAACGTGGAGATACAGACATTTTGATCCAGATGAA 439
||||| |||||||| || ||||||||||||||||||||| | ||||||| ||||||||||
Sbjct 358 CTTCGTCCATTTCGACGAAAAAATAGAACGTGGAGATACCGCCATTTTGTTCCAGATGAA 417
Query 440 GAAGAAGGAGATGCAAGGAGCAAAGCTAAACACAACTCAGATATTTGG 487
|||| || | | |||||||||||||||||||||||||||||| |||||
Sbjct 418 GAAGGAG-A-A-GCAAGGAGCAAAGCTAAACACAACTCAGATCTTTGG 462
Score = 331 bits (179), Expect = 4e-90
Identities = 247/278 (89%), Gaps = 11/278 (4%)
Strand=Plus/Plus
Query 565 GAATAAGCTAAAACATATGGTTGGAGGATTATCACGCGGCTGCGGACGAAGTAGAAGAGA 624
||||||||| ||||||||||||||||||||||||||||| |||| |||||||||||||||
Sbjct 462 GAATAAGCTTAAACATATGGTTGGAGGATTATCACGCGGTTGCGTACGAAGTAGAAGAGA 521
Query 625 TTCGTGATGAACTA-AACAAGAATCAAGAAATC-GAATGTTGTCTGAATTTCG-T--TAA 679
||| ||||| || | ||||||||||||| || | || | ||||||||| || | | ||
Sbjct 522 TTCTTGATGGAC-ACAACAAGAATCAAGGAA-CGGATTATTGTCTGAAGTTGGCTAAGAA 579
Query 680 GAAGTGAGAAA-AGctttttttcttttcttttcttttcacataacctttttATTGTTCTT 738
||||||||||| ||||||||| || |||| |||||||||||||||||||||| ||||
Sbjct 580 GAAGTGAGAAATTTTTTTTTTTCTATT-TTTT-TTTTCACATAACCTTTTTATTGGTCTT 637
Query 739 CCAGAACTTGAGGAAGATGAAGATCATATCAATACAGAGGaaaaaaaGTGGAAATAAAAG 798
|||||||||||||||||||||||||| |||||||||||| |||||||| |||||||||||
Sbjct 638 CCAGAACTTGAGGAAGATGAAGATCAAATCAATACAGAGAAAAAAAAG-GGAAATAAAAG 696
Query 799 AGAAATTATGAAATGAGGCATAAGAGATCATTCCTCAT 836
||||||| ||||||||||||||||||||||| ||||||
Sbjct 697 AGAAATTTTGAAATGAGGCATAAGAGATCATGCCTCAT 734
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 30955808604
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5