BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT1G77770.1
Length=1216
Score E
Sequences producing significant alignments: (Bits) Value
Ahg476943 jgi|Araly1|476943|fgenesh2_kg.2__2073__AT1G77770.2 1461 0.0
Ahg476940 jgi|Araly1|476940|fgenesh2_kg.2__2070__AT1G77765.2 220 1e-56
Ahg489753 jgi|Araly1|489753|fgenesh2_kg.6__2887__AT4G08460.1 122 4e-27
Ahg908477 jgi|Araly1|908477|Al_scaffold_0002_1558 65.8 7e-10
> Ahg476943 jgi|Araly1|476943|fgenesh2_kg.2__2073__AT1G77770.2
Length=1182
Score = 1461 bits (791), Expect = 0.0
Identities = 868/905 (96%), Gaps = 6/905 (1%)
Strand=Plus/Plus
Query 1 TAGAAGCAATCTCAC--TTTTTCCC--TTTCTCTGTACATCATCATCCTTCAAGCTCGGA 56
||||||||||||| | |||||||| ||| |||||||||||||||||||||||||||||
Sbjct 1 TAGAAGCAATCTCGCTTTTTTTCCCTTTTTATCTGTACATCATCATCCTTCAAGCTCGGA 60
Query 57 GCTCTCTCTTCCCGCCGGCGATCTCCTCCGCTTCTCTCCGA-TTTTAAGTCGATCGAATG 115
||||||||||||||||||||||||||||||||||| ||||| |||||| |||||||||||
Sbjct 61 GCTCTCTCTTCCCGCCGGCGATCTCCTCCGCTTCTTTCCGATTTTTAA-TCGATCGAATG 119
Query 116 GGGAAAATCAAGAAAGTGAATCAAAGGGGTCATATTGCTACACCGTATCCATCACCATGT 175
|||||||||||||||| ||||||||||||||| ||||||||||| |||||||||||||||
Sbjct 120 GGGAAAATCAAGAAAGCGAATCAAAGGGGTCACATTGCTACACCTTATCCATCACCATGT 179
Query 176 TGTAAGAAAGAATGGGCTGGCTCAACCTGTCCAGTATGCTTGGAGTCTCCACACAATGCG 235
|| |||||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct 180 TGCAAGAAAGAATGGGCTGGCTCAACCTGCCCAGTATGCTTGGAGTCTCCACACAATGCG 239
Query 236 GTTCTTCTCCTGTGTTCGTCTTATCACAAAGGATGCCGTCCTTACATGTGTGCTACAAGC 295
||||||||||||||||| ||||||||||||||||| ||||||||||||||||| ||||||
Sbjct 240 GTTCTTCTCCTGTGTTCATCTTATCACAAAGGATGTCGTCCTTACATGTGTGCAACAAGC 299
Query 296 AGCCGTTTTGCCAACTGCCTTGATCAATACAGGAAATCCTACGGTAACGAAAACTCAGGA 355
|||||||||||||||||||| || |||||||||||||| ||| ||||||| |||||||||
Sbjct 300 AGCCGTTTTGCCAACTGCCTCGAGCAATACAGGAAATCATACAGTAACGAGAACTCAGGA 359
Query 356 CAACCCGAGCTTTTGTGTCCACTGTGTAGAGGTCAAGTGAAAGGCTGGACTGTTGTGAAA 415
||||||||||| |||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct 360 CAACCCGAGCTCTTGTGTCCACTGTGTAGAGGTCAAGTGAAAGGTTGGACTGTTGTGAAA 419
Query 416 GATGCTCGGATGCATTTTAACTCCAAGAGAAGGACTTGTATGCAGGATAACTGTTCCTTT 475
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 420 GATGCTCGGATGCATTTTAACTCCAAGAGAAGGACTTGTATGCAGGATAACTGTTCCTTT 479
Query 476 TTAGGAAATTTCCGAAAGCTCAAGAAACACATGAAGGAAAAACACCCACATGCTTGCCCA 535
||||||| |||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct 480 GTAGGAAACTTCCGAAAGCTCAAGAAACACATGAAGGAAAACCACCCACATGCTTGCCCG 539
Query 536 AGAGCCATTGATCCAGCTTTAGAAACTAAATGGAAGAGGCTTGAGAGGGAAAGAGACAGA 595
|||||||||||||||||| | ||||| |||||||||||||||||||||||||||||||||
Sbjct 540 AGAGCCATTGATCCAGCTCTGGAAACCAAATGGAAGAGGCTTGAGAGGGAAAGAGACAGA 599
Query 596 AGAGACGTGATAAGCACGATAATGTCATCGACACCAGGTGCTGTTGTGTTGGGAGATTAT 655
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 600 AGAGACGTGATAAGCACGATAATGTCATCGACACCAGGTGCTGTTGTGTTGGGAGATTAT 659
Query 656 GTGATAGAGCCGCATAACCGAGGTGTTTATGATGAAGAAGACGAAGAAGAAGATTACAGC 715
||||||||||| |||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct 660 GTGATAGAGCCACATAACCGAGCTGTTTATGATGAAGAAGACGAAGAAGAAGATTACAGC 719
Query 716 TCAGATGACTCTCTAAGCAACGGGATACTGGATCTAGAATCATCATGGCAAGGACAAAGC 775
|||||||||||||| |||||||||||| ||||||||||||||||||||||||||||||||
Sbjct 720 TCAGATGACTCTCTGAGCAACGGGATATTGGATCTAGAATCATCATGGCAAGGACAAAGC 779
Query 776 CATCATATTCGGTTTCTTGATATGGAATCAAGTGACTTCGCATCCTCTTCCAGCTCCCCT 835
||||||||||||||||| ||||||||||||||||| ||||||||||||||||||||||||
Sbjct 780 CATCATATTCGGTTTCTCGATATGGAATCAAGTGATTTCGCATCCTCTTCCAGCTCCCCT 839
Query 836 GCTTCTCCAAGCCGTTCGCTTCACCGTTTGCTCTTTCCAAGGAACCAGAGAGGCGGCAAT 895
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 840 GCTTCTCCAAGCCGTTCGCTTCACCGTTTGCTCTTTCCAAGGAACCAGAGAGGCGGCAAT 899
Query 896 AGAGG 900
|||||
Sbjct 900 AGAGG 904
Score = 300 bits (162), Expect = 2e-80
Identities = 178/185 (96%), Gaps = 3/185 (2%)
Strand=Plus/Plus
Query 898 AGGAGCAGTATAAAAAGGCTAACATGACTAGCCAATTAGCCATACACAGGGAATTGGaaa 957
||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct 1001 AGGAGCAGTATAAAAAGGCTAACATGACTAGCCAATTAGCCATACACAGGGAATT-GAAA 1059
Query 958 aaaaaaaCTCGCAGTCGTCCCTTTCTTTTATTTATTTTCATGTAAATTATTGTATTCTGT 1017
|||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct 1060 AAAAAAACTCGCAGTCGTCCCTTTCTTTTATTTATTTTCATGTAAATTAT-GTATTCTGT 1118
Query 1018 GTAATTGTATTATTGTTTCTGCATTGTTGTACTTTAATGAGGAATGATCTCTTATGCCTC 1077
||||||||| ||||||||| ||||||||||||| || ||||| |||||||||||||||||
Sbjct 1119 GTAATTGTAGTATTGTTTCCGCATTGTTGTACTCTA-TGAGGCATGATCTCTTATGCCTC 1177
Query 1078 ATTTC 1082
|||||
Sbjct 1178 ATTTC 1182
> Ahg476940 jgi|Araly1|476940|fgenesh2_kg.2__2070__AT1G77765.2
Length=734
Score = 220 bits (119), Expect = 1e-56
Identities = 147/160 (92%), Gaps = 4/160 (3%)
Strand=Plus/Minus
Query 1054 ATGAGGAATGATCTCTTATGCCTCATTTCATAATTTCTCTTTTATTTCCACtttttttCC 1113
|||||| ||||||||||||||||||||||| |||||||||||||||||| |||||||| |
Sbjct 734 ATGAGGCATGATCTCTTATGCCTCATTTCAAAATTTCTCTTTTATTTCC-CTTTTTTTTC 676
Query 1114 TCTGTATTGATATGATCTTCATCTTCCTCAAGTTCTGGAAGAACAATaaaaaggttatgt 1173
||||||||||| |||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct 675 TCTGTATTGATTTGATCTTCATCTTCCTCAAGTTCTGGAAGACCAATAAAAAGGTTATGT 616
Query 1174 gaaaagaaaagaaaagaaaaaaagCT-TTTCTCACTTCTT 1212
||||| |||| || ||||||||| |||||||||||||
Sbjct 615 GAAAA-AAAA-AATAGAAAAAAAAAAATTTCTCACTTCTT 578
> Ahg489753 jgi|Araly1|489753|fgenesh2_kg.6__2887__AT4G08460.1
Length=1290
Score = 122 bits (66), Expect = 4e-27
Identities = 334/461 (72%), Gaps = 28/461 (6%)
Strand=Plus/Plus
Query 223 TCCACACAA-TGCGGTTC-TTCTCCTGTGTTCGTCTTATCACAAAGGATGCCGTCCTTAC 280
||| ||||| | ||| || | ||||| || || |||||||||||||||||||||||||||
Sbjct 360 TCCTCACAACT-CGG-TCGTCCTCCTTTGCTCATCTTATCACAAAGGATGCCGTCCTTAC 417
Query 281 ATGTGTGCTACAAGCAGCCGTTT-TGCCAACTGCCTTGATCAATACAGGAAAT-CCTACG 338
|||||||| || | | |||||| | | || || || || || |||| ||| ||||||
Sbjct 418 ATGTGTGCCACGGGAAACCGTTTCT-CAAATTGTCTAGAGCAGTACAA-AAAGGCCTACG 475
Query 339 GTAACGAAAACTCA-G-GACAA-CC-C--GAGCTTTTGTGTCCACTGTGTAGAGGTCAAG 392
|| || | | | ||||| || | ||||| ||||| || || ||||| ||||| |
Sbjct 476 CAAAGGATGAGAAAAGTGACAAACCGCCAGAGCTATTGTGCCCGCTTTGTAGGGGTCAGG 535
Query 393 TGAAAGGCTGGACTGTTGT-GAAAGATGCTCGGATGCATTTTAACTCCAAGAGAAGGACT 451
||||||| ||||||||||| |||| | | |||| | || | || || |||| |||| |
Sbjct 536 TGAAAGGTTGGACTGTTGTTGAAA-AGGAACGGAAGTATCTGAATTCTAAGAAAAGGTCA 594
Query 452 TGTATGCAGGATAACTGTTCCTTTT-TAGGAAATT-TCCGAAAGCTCAAGAAACACATGA 509
|||||| | ||||| |||| |||| | |||| | | || |||||||||| || | |
Sbjct 595 TGTATGAAAGATAAGTGTTTGTTTTAT-GGAAGCTATA-GACAGCTCAAGAAGCATGTTA 652
Query 510 AGGAAAAACACCC-ACATGCTTGCCCAAGAGCCATTGATCCAGCTT-TAGAAACTAAATG 567
|||| || || | | || ||||||||||| || || | | | || | |||||
Sbjct 653 AGGAGGTTCATCCGAGA-GCCAAACCAAGAGCCATAGACCCTG-TGCTGGAGGCGAAATG 710
Query 568 GAAGAGGCTTGAGAGG-GAAAGAGACAGAAGAGACGTGATAAGCAC-GATAATGTCATCG 625
||||| ||| ||| | || || || || || || || || ||||| | | ||| | ||
Sbjct 711 GAAGAAGCTCGAG-GTTGAGAGGGAGAGGAGTGATGTAATCAGCACAG-TCATGGCGTCA 768
Query 626 ACACCAGGTGCTGTTGTGTTGGGAGATTATGTGATAGAGCC 666
||||| || ||| | || || ||||| |||||||| |||||
Sbjct 769 ACACCCGGGGCTATGGTATTTGGAGACTATGTGATTGAGCC 809
> Ahg908477 jgi|Araly1|908477|Al_scaffold_0002_1558
Length=354
Score = 65.8 bits (35), Expect = 7e-10
Identities = 37/38 (97%), Gaps = 0/38 (0%)
Strand=Plus/Minus
Query 59 TCTCTCTTCCCGCCGGCGATCTCCTCCGCTTCTCTCCG 96
||||||||| ||||||||||||||||||||||||||||
Sbjct 169 TCTCTCTTCTCGCCGGCGATCTCCTCCGCTTCTCTCCG 132
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 45404394147
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5