BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT1G77780.1
Length=1229
Score E
Sequences producing significant alignments: (Bits) Value
Ahg909403 jgi|Araly1|909403|Al_scaffold_0002_2484 1406 0.0
> Ahg909403 jgi|Araly1|909403|Al_scaffold_0002_2484
Length=1167
Score = 1406 bits (761), Expect = 0.0
Identities = 921/998 (92%), Gaps = 11/998 (1%)
Strand=Plus/Plus
Query 15 TACGCTTCTTTTTCTTTCAGCCAGATTAACCACCGCCGGAAATATGAATTCC-TTCGCCG 73
||| ||||||||| ||| |||||||||||| | |||||||| ||||| ||| || | ||
Sbjct 30 TACTCTTCTTTTTATTTTAGCCAGATTAACTGCGGCCGGAAACATGAA-TCCGTTTGTCG 88
Query 74 GAGTATGTTATGGAAGAAATGGAGACAATCTCCCATCTCCAGCCA-AAACT-GTGTCTCT 131
|||| ||| |||||||||| |||||||||||||||||||| | || ||| | || |||||
Sbjct 89 GAGTCTGTGATGGAAGAAACGGAGACAATCTCCCATCTCC-GGCACAAA-TAGTATCTCT 146
Query 132 ATACAAGAAAATAAACGTCGGTGGGATAAGACTCTACGAGCCTTTCCCTGACCTCATCGT 191
|||||||||||||||||||| |||||||||||| ||||||||| |||| |||||||||||
Sbjct 147 ATACAAGAAAATAAACGTCGCTGGGATAAGACTATACGAGCCTGTCCCCGACCTCATCGT 206
Query 192 CTCATTACAAGGAACTGGTCTTCTTGTAGCCATCGGACCAAGAAACGAAGCAATCAAAAC 251
|||||||||||||||||||||||| |||||||||||||||| |||||||| |||||||||
Sbjct 207 CTCATTACAAGGAACTGGTCTTCTCGTAGCCATCGGACCAAAAAACGAAGAAATCAAAAC 266
Query 252 ATTAGCCGAAGAATACCAATTTGCCTTAAATTGGGAT-AAAACATTTATAGCACCATACA 310
|||||||||| | ||| |||||||||||||||||| | ||||| ||||||||||||||||
Sbjct 267 ATTAGCCGAACATTACGAATTTGCCTTAAATTGGG-TAAAAACGTTTATAGCACCATACA 325
Query 311 AAAACGTAGCTTTCAATTGGATAACCGTGGGAAACGAAGTGATAGAAGGAGAGATCGGAC 370
|||||||||||||||||||||| || ||||||||||||||||| ||||||||||||||||
Sbjct 326 AAAACGTAGCTTTCAATTGGATCACTGTGGGAAACGAAGTGATCGAAGGAGAGATCGGAC 385
Query 371 GTTACGTGCCACAAGCCATGAAAAATATAAAAGCTGCGTTGACCGAAATCGGAAACTCAA 430
|||||||||||||||||||||| |||||||||||||| ||||||||||||||||||||||
Sbjct 386 GTTACGTGCCACAAGCCATGAAGAATATAAAAGCTGCATTGACCGAAATCGGAAACTCAA 445
Query 431 AGATCCACGTCACCACTGTCATATCCACAGCCGCACTCGCTAACTCTTACCCACCATCAG 490
|||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct 446 AGATCCACGTCACCACCGTCATATCCACAGCCGCACTCGCTAACTCTTACCCACCATCAG 505
Query 491 CCGGAGTATTTAAACCGGCAATAACCGAACTTATAACCGAAATCGTATCGATTCTTAGCT 550
||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct 506 CCGGAGTATTTAAACCGGCGATAACCGAACTTATAACCGAAATCGTATCGATTCTTAGCT 565
Query 551 CTACCGATTCACCGCTCATGGTCAACGTTTACCCTTATTTCGCTTACGCATCAGACCCTA 610
||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 566 CTACCGATTCACCACTCATGGTCAACGTTTACCCTTATTTCGCTTACGCATCAGACCCTA 625
Query 611 GCCACGTGTCACTGGAATACGCAACGTTCCGTTCGACTTCACCGGTAGTGACCGACGGAA 670
||| |||||| | |||||||||||||||||||||||||||||||||||||| |||||||
Sbjct 626 CCCAAGTGTCATTAGAATACGCAACGTTCCGTTCGACTTCACCGGTAGTGACAGACGGAA 685
Query 671 AATACCAATACACAAATATATTCGATGCAACGTTGGATGCTTTCAACGTGGCATTAGAGA 730
||||||||||||| || ||||| ||||||||||||||||||||||||| || |||||||
Sbjct 686 AATACCAATACACGAACATATTTGATGCAACGTTGGATGCTTTCAACGCAGCGTTAGAGA 745
Query 731 AGATCAACCACGGAAGCGTGAAGGTCTACGTAGCGGAGACCGGTTGGCCTACTAGAGGGA 790
||||||||||||||||||||||||| |||||||||||||| ||||||||||||||||| |
Sbjct 746 AGATCAACCACGGAAGCGTGAAGGTGTACGTAGCGGAGACTGGTTGGCCTACTAGAGGAA 805
Query 791 ATGATCCATACACAAGCGTGGAGAACGCTCGTGCTTATAACCAGGGGTTGCTTAAGAAAC 850
||| ||||||||| ||||||||||| |||||||| |||||||||||||||||||||||||
Sbjct 806 ATGTTCCATACACGAGCGTGGAGAATGCTCGTGCCTATAACCAGGGGTTGCTTAAGAAAC 865
Query 851 TAACCACAGGT-A-A-GGGTACGCCAAGGCGGCCCAATGTTCCAGTGATAACTTTTTTCT 907
||||||||||| | | |||||| || || ||||| ||||| || ||||| ||||||||||
Sbjct 866 TAACCACAGGTCATAAGGGTACTCCGAGACGGCCTAATGTCCCTGTGATGACTTTTTTCT 925
Query 908 TCGAAATGTTCAATGAAGATTTGAAACAAGGAGCGGTTGAACAAAGCTTCGGATTCTTCG 967
| |||||||||||||| ||||||||| |||||| ||| ||| |||||||||||||||||
Sbjct 926 TTGAAATGTTCAATGAGGATTTGAAAGAAGGAGAGGTAGAAAAAAGCTTCGGATTCTTCA 985
Query 968 ATCCTAATATGGCTCCTGTCTACGATATGTGGAATATA 1005
||||| ||||||||||||||||||||||||||||||||
Sbjct 986 ATCCTGATATGGCTCCTGTCTACGATATGTGGAATATA 1023
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 45899992068
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5