BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: halleri_transcript_ahg.fa 32,672 sequences; 38,939,717 total letters Query= AT1G77790.1 Length=1041 Score E Sequences producing significant alignments: (Bits) Value Ahg316691 jgi|Araly1|316691|fgenesh1_pm.C_scaffold_2001724 1410 0.0 Ahg936762 jgi|Araly1|936762|scaffold_500953.1 346 2e-94 > Ahg316691 jgi|Araly1|316691|fgenesh1_pm.C_scaffold_2001724 Length=999 Score = 1410 bits (763), Expect = 0.0 Identities = 916/991 (92%), Gaps = 5/991 (1%) Strand=Plus/Plus Query 40 CTCCTGTCCATCCAAATCTTTTGCACAGCGGGTGTTGCAGGGGACATCACCGGAGATTGT 99 ||||| |||||||||||||||||| |||| ||||||||||||||||||||||||| |||| Sbjct 7 CTCCTATCCATCCAAATCTTTTGCCCAGCTGGTGTTGCAGGGGACATCACCGGAGTTTGT 66 Query 100 TACGGCCGGAACGGCAACAATCTCCCAACGCCGGCAGATACAGTTGCTCTATACAAAAGC 159 |||||||||||||||||||||||||||||||||||||||||||| ||| ||||||||| | Sbjct 67 TACGGCCGGAACGGCAACAATCTCCCAACGCCGGCAGATACAGTAGCTTTATACAAAACC 126 Query 160 AACAACATCGACGCAATCCGTATGTACGAGCCCTTCGCAGACATGCTCGAAGCGCTTCGT 219 |||||||||||||||||||||||||||||||||||||| |||||||||||||| || ||| Sbjct 127 AACAACATCGACGCAATCCGTATGTACGAGCCCTTCGCCGACATGCTCGAAGCTCTCCGT 186 Query 220 GGCTCAGGTCTCTTAGTCGCGTTTGGTCCACGAAACGAAGATATCCAATCCCTAGCTCAC 279 ||||||||||||| |||||||||||||||||||||||||| |||||||||||||| || Sbjct 187 GGCTCAGGTCTCTCCGTCGCGTTTGGTCCACGAAACGAAGAAATCCAATCCCTAGCCCAA 246 Query 280 GATCCAGCCGCCGCAACAAATTTCGTCTCCACCTGGATTACACCTTACCAAAACGACGTT 339 ||||||||||||||||||||||||||| |||||||||| |||||||||||||||||||| Sbjct 247 GATCCAGCCGCCGCAACAAATTTCGTCGCCACCTGGATCACACCTTACCAAAACGACGTC 306 Query 340 GCAATTAAATGGATCACAATTGGTAACGAAGTCTTCCCCGGAGAAATCGCTCAATTTGTT 399 ||||| |||||||||||||| ||||||||||||||||||||||||||||||| ||| || Sbjct 307 GCAATCAAATGGATCACAATCGGTAACGAAGTCTTCCCCGGAGAAATCGCTCCATTCGTC 366 Query 400 GCCGCCGCGATAAAAAACGTCAACGTCGCGCTAACGAATTCCGGCGTCACAGGAATCTCT 459 ||||||||||| | ||||||||||| |||||||||||||||||||||||||||||| | Sbjct 367 GCCGCCGCGATCAGAAACGTCAACGCCGCGCTAACGAATTCCGGCGTCACAGGAATAGCC 426 Query 460 GTCACGACGGTTTTAGCTATGACCGCGTTGACCAATACATATCCACCTTCCGCTGCAACA 519 ||||| |||||||||||||||| ||||||||||||| ||||||||||||| ||||||||| Sbjct 427 GTCACAACGGTTTTAGCTATGAACGCGTTGACCAATTCATATCCACCTTCAGCTGCAACA 486 Query 520 TTCCTCCCAGATCTAACCGAGATCATGACGGAGATTACATCGATACTCTCAGAGACGAAT 579 |||||||||||||||||||||||||||||||||||| ||||||||||||| |||||||| Sbjct 487 TTCCTCCCAGATCTAACCGAGATCATGACGGAGATTTCATCGATACTCTCTCAGACGAAT 546 Query 580 TCGCCTCTCATGACGAATATCTACCCGTACTTCGCATACGCGTCAGATCCATATCACATC 639 |||||||||||||| ||||||||||||||||||||||||||||||||||| ||||||||| Sbjct 547 TCGCCTCTCATGACCAATATCTACCCGTACTTCGCATACGCGTCAGATCCTTATCACATC 606 Query 640 TCACTCGATTACGCTAGTTTCAAATCCAATACACCGGTAGTGATAGACGGTGATTTGTAT 699 ||||||||||||||||||||||||||| |||| ||||||||||| |||||||||||| | Sbjct 607 TCACTCGATTACGCTAGTTTCAAATCCGATACGCCGGTAGTGATCGACGGTGATTTGAAG 666 Query 700 TACAACAATATGTTTGAGGCGATGGTTGACGGATTCAATGCGGCGTTGGAGAAGATCAAC 759 |||| ||| ||||| ||||||||||| ||||||||||||||||||||||||||||||||| Sbjct 667 TACACCAACATGTTCGAGGCGATGGTGGACGGATTCAATGCGGCGTTGGAGAAGATCAAC 726 Query 760 GCCGCAAACGTGGTGGTGATGGTGGCGGAGACGGGATGGCCGACGGAGGGAAATCCACCG 819 |||| ||| ||||||||||||||||||||| | ||||||||||||||||||||||||||| Sbjct 727 GCCGGAAATGTGGTGGTGATGGTGGCGGAGTCTGGATGGCCGACGGAGGGAAATCCACCG 786 Query 820 CACACGAGTGTTGATAACGCGAAGGCCTATAATATGGGGATTCGAACATGTGGGAGATCT 879 | ||||||||||||||||| |||||||| ||| |||||||| | ||||||||| ||||| Sbjct 787 TATACGAGTGTTGATAACGCCAAGGCCTACAATTTGGGGATTAGGACATGTGGGGGATCT 846 Query 880 GCAGAACGGAAGCGGACGCCCCGCCGGCAAAACACGCCGGTTGACGTGTTTCTATTCGCA 939 | | | |||||||||||||| ||||||| | |||||||| ||||||||||||||||| Sbjct 847 G-A-A-CGGAAGCGGACGCCTCGCCGGCCGGAGACGCCGGTGGACGTGTTTCTATTCGCG 903 Query 940 ATGTTCAAAGAAAATCAGAAGGATGGTCCGGTGGAACAGAG-TTTCGGAATCTTTGCACC 998 ||||||| ||| ||||||||||||||||||||||| ||||| ||| |||||||||||||| Sbjct 904 ATGTTCAGAGAGAATCAGAAGGATGGTCCGGTGGAGCAGAGCTTT-GGAATCTTTGCACC 962 Query 999 TGATATGACTCCAGTCTACGATCTTTTTTGT 1029 |||||||||||||||||||||||| |||||| Sbjct 963 TGATATGACTCCAGTCTACGATCTCTTTTGT 993 > Ahg936762 jgi|Araly1|936762|scaffold_500953.1 Length=244 Score = 346 bits (187), Expect = 2e-94 Identities = 225/244 (92%), Gaps = 0/244 (0%) Strand=Plus/Plus Query 161 ACAACATCGACGCAATCCGTATGTACGAGCCCTTCGCAGACATGCTCGAAGCGCTTCGTG 220 |||| |||||||||||||||||||||||||||||||| |||||||||||||| || |||| Sbjct 1 ACAATATCGACGCAATCCGTATGTACGAGCCCTTCGCTGACATGCTCGAAGCCCTCCGTG 60 Query 221 GCTCAGGTCTCTTAGTCGCGTTTGGTCCACGAAACGAAGATATCCAATCCCTAGCTCACG 280 |||||||||||| |||||||||||||||||||||||||| |||||||||||||| || | Sbjct 61 GCTCAGGTCTCTCCGTCGCGTTTGGTCCACGAAACGAAGAAATCCAATCCCTAGCCCAAG 120 Query 281 ATCCAGCCGCCGCAACAAATTTCGTCTCCACCTGGATTACACCTTACCAAAACGACGTTG 340 |||||||||||||||||||||||||| |||||||||| |||||||||||||||||||| Sbjct 121 ATCCAGCCGCCGCAACAAATTTCGTCGCCACCTGGATCACACCTTACCAAAACGACGTCA 180 Query 341 CAATTAAATGGATCACAATTGGTAACGAAGTCTTCCCCGGAGAAATCGCTCAATTTGTTG 400 |||| |||||||||||||| ||||||||||||||||||||| ||||||||| ||| || | Sbjct 181 CAATCAAATGGATCACAATCGGTAACGAAGTCTTCCCCGGATAAATCGCTCCATTCGTCG 240 Query 401 CCGC 404 |||| Sbjct 241 CCGC 244 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 38732883672 Database: halleri_transcript_ahg.fa Posted date: Sep 25, 2014 2:02 AM Number of letters in database: 38,939,717 Number of sequences in database: 32,672 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5