BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT1G77790.1
Length=1041
Score E
Sequences producing significant alignments: (Bits) Value
Ahg316691 jgi|Araly1|316691|fgenesh1_pm.C_scaffold_2001724 1410 0.0
Ahg936762 jgi|Araly1|936762|scaffold_500953.1 346 2e-94
> Ahg316691 jgi|Araly1|316691|fgenesh1_pm.C_scaffold_2001724
Length=999
Score = 1410 bits (763), Expect = 0.0
Identities = 916/991 (92%), Gaps = 5/991 (1%)
Strand=Plus/Plus
Query 40 CTCCTGTCCATCCAAATCTTTTGCACAGCGGGTGTTGCAGGGGACATCACCGGAGATTGT 99
||||| |||||||||||||||||| |||| ||||||||||||||||||||||||| ||||
Sbjct 7 CTCCTATCCATCCAAATCTTTTGCCCAGCTGGTGTTGCAGGGGACATCACCGGAGTTTGT 66
Query 100 TACGGCCGGAACGGCAACAATCTCCCAACGCCGGCAGATACAGTTGCTCTATACAAAAGC 159
|||||||||||||||||||||||||||||||||||||||||||| ||| ||||||||| |
Sbjct 67 TACGGCCGGAACGGCAACAATCTCCCAACGCCGGCAGATACAGTAGCTTTATACAAAACC 126
Query 160 AACAACATCGACGCAATCCGTATGTACGAGCCCTTCGCAGACATGCTCGAAGCGCTTCGT 219
|||||||||||||||||||||||||||||||||||||| |||||||||||||| || |||
Sbjct 127 AACAACATCGACGCAATCCGTATGTACGAGCCCTTCGCCGACATGCTCGAAGCTCTCCGT 186
Query 220 GGCTCAGGTCTCTTAGTCGCGTTTGGTCCACGAAACGAAGATATCCAATCCCTAGCTCAC 279
||||||||||||| |||||||||||||||||||||||||| |||||||||||||| ||
Sbjct 187 GGCTCAGGTCTCTCCGTCGCGTTTGGTCCACGAAACGAAGAAATCCAATCCCTAGCCCAA 246
Query 280 GATCCAGCCGCCGCAACAAATTTCGTCTCCACCTGGATTACACCTTACCAAAACGACGTT 339
||||||||||||||||||||||||||| |||||||||| ||||||||||||||||||||
Sbjct 247 GATCCAGCCGCCGCAACAAATTTCGTCGCCACCTGGATCACACCTTACCAAAACGACGTC 306
Query 340 GCAATTAAATGGATCACAATTGGTAACGAAGTCTTCCCCGGAGAAATCGCTCAATTTGTT 399
||||| |||||||||||||| ||||||||||||||||||||||||||||||| ||| ||
Sbjct 307 GCAATCAAATGGATCACAATCGGTAACGAAGTCTTCCCCGGAGAAATCGCTCCATTCGTC 366
Query 400 GCCGCCGCGATAAAAAACGTCAACGTCGCGCTAACGAATTCCGGCGTCACAGGAATCTCT 459
||||||||||| | ||||||||||| |||||||||||||||||||||||||||||| |
Sbjct 367 GCCGCCGCGATCAGAAACGTCAACGCCGCGCTAACGAATTCCGGCGTCACAGGAATAGCC 426
Query 460 GTCACGACGGTTTTAGCTATGACCGCGTTGACCAATACATATCCACCTTCCGCTGCAACA 519
||||| |||||||||||||||| ||||||||||||| ||||||||||||| |||||||||
Sbjct 427 GTCACAACGGTTTTAGCTATGAACGCGTTGACCAATTCATATCCACCTTCAGCTGCAACA 486
Query 520 TTCCTCCCAGATCTAACCGAGATCATGACGGAGATTACATCGATACTCTCAGAGACGAAT 579
|||||||||||||||||||||||||||||||||||| ||||||||||||| ||||||||
Sbjct 487 TTCCTCCCAGATCTAACCGAGATCATGACGGAGATTTCATCGATACTCTCTCAGACGAAT 546
Query 580 TCGCCTCTCATGACGAATATCTACCCGTACTTCGCATACGCGTCAGATCCATATCACATC 639
|||||||||||||| ||||||||||||||||||||||||||||||||||| |||||||||
Sbjct 547 TCGCCTCTCATGACCAATATCTACCCGTACTTCGCATACGCGTCAGATCCTTATCACATC 606
Query 640 TCACTCGATTACGCTAGTTTCAAATCCAATACACCGGTAGTGATAGACGGTGATTTGTAT 699
||||||||||||||||||||||||||| |||| ||||||||||| |||||||||||| |
Sbjct 607 TCACTCGATTACGCTAGTTTCAAATCCGATACGCCGGTAGTGATCGACGGTGATTTGAAG 666
Query 700 TACAACAATATGTTTGAGGCGATGGTTGACGGATTCAATGCGGCGTTGGAGAAGATCAAC 759
|||| ||| ||||| ||||||||||| |||||||||||||||||||||||||||||||||
Sbjct 667 TACACCAACATGTTCGAGGCGATGGTGGACGGATTCAATGCGGCGTTGGAGAAGATCAAC 726
Query 760 GCCGCAAACGTGGTGGTGATGGTGGCGGAGACGGGATGGCCGACGGAGGGAAATCCACCG 819
|||| ||| ||||||||||||||||||||| | |||||||||||||||||||||||||||
Sbjct 727 GCCGGAAATGTGGTGGTGATGGTGGCGGAGTCTGGATGGCCGACGGAGGGAAATCCACCG 786
Query 820 CACACGAGTGTTGATAACGCGAAGGCCTATAATATGGGGATTCGAACATGTGGGAGATCT 879
| ||||||||||||||||| |||||||| ||| |||||||| | ||||||||| |||||
Sbjct 787 TATACGAGTGTTGATAACGCCAAGGCCTACAATTTGGGGATTAGGACATGTGGGGGATCT 846
Query 880 GCAGAACGGAAGCGGACGCCCCGCCGGCAAAACACGCCGGTTGACGTGTTTCTATTCGCA 939
| | | |||||||||||||| ||||||| | |||||||| |||||||||||||||||
Sbjct 847 G-A-A-CGGAAGCGGACGCCTCGCCGGCCGGAGACGCCGGTGGACGTGTTTCTATTCGCG 903
Query 940 ATGTTCAAAGAAAATCAGAAGGATGGTCCGGTGGAACAGAG-TTTCGGAATCTTTGCACC 998
||||||| ||| ||||||||||||||||||||||| ||||| ||| ||||||||||||||
Sbjct 904 ATGTTCAGAGAGAATCAGAAGGATGGTCCGGTGGAGCAGAGCTTT-GGAATCTTTGCACC 962
Query 999 TGATATGACTCCAGTCTACGATCTTTTTTGT 1029
|||||||||||||||||||||||| ||||||
Sbjct 963 TGATATGACTCCAGTCTACGATCTCTTTTGT 993
> Ahg936762 jgi|Araly1|936762|scaffold_500953.1
Length=244
Score = 346 bits (187), Expect = 2e-94
Identities = 225/244 (92%), Gaps = 0/244 (0%)
Strand=Plus/Plus
Query 161 ACAACATCGACGCAATCCGTATGTACGAGCCCTTCGCAGACATGCTCGAAGCGCTTCGTG 220
|||| |||||||||||||||||||||||||||||||| |||||||||||||| || ||||
Sbjct 1 ACAATATCGACGCAATCCGTATGTACGAGCCCTTCGCTGACATGCTCGAAGCCCTCCGTG 60
Query 221 GCTCAGGTCTCTTAGTCGCGTTTGGTCCACGAAACGAAGATATCCAATCCCTAGCTCACG 280
|||||||||||| |||||||||||||||||||||||||| |||||||||||||| || |
Sbjct 61 GCTCAGGTCTCTCCGTCGCGTTTGGTCCACGAAACGAAGAAATCCAATCCCTAGCCCAAG 120
Query 281 ATCCAGCCGCCGCAACAAATTTCGTCTCCACCTGGATTACACCTTACCAAAACGACGTTG 340
|||||||||||||||||||||||||| |||||||||| ||||||||||||||||||||
Sbjct 121 ATCCAGCCGCCGCAACAAATTTCGTCGCCACCTGGATCACACCTTACCAAAACGACGTCA 180
Query 341 CAATTAAATGGATCACAATTGGTAACGAAGTCTTCCCCGGAGAAATCGCTCAATTTGTTG 400
|||| |||||||||||||| ||||||||||||||||||||| ||||||||| ||| || |
Sbjct 181 CAATCAAATGGATCACAATCGGTAACGAAGTCTTCCCCGGATAAATCGCTCCATTCGTCG 240
Query 401 CCGC 404
||||
Sbjct 241 CCGC 244
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 38732883672
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5