BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT1G77810.1
Length=1631
Score E
Sequences producing significant alignments: (Bits) Value
Ahg476947 jgi|Araly1|476947|fgenesh2_kg.2__2077__AT1G77810.1 2154 0.0
Ahg476946 jgi|Araly1|476946|fgenesh2_kg.2__2076__AT1G77800.1 86.1 8e-16
> Ahg476947 jgi|Araly1|476947|fgenesh2_kg.2__2077__AT1G77810.1
Length=1637
Score = 2154 bits (1166), Expect = 0.0
Identities = 1509/1661 (91%), Gaps = 78/1661 (5%)
Strand=Plus/Plus
Query 20 AAATGTTCTTGATTGTGTTGTG--TCTCT-T-TC-CCCTTTAAATCTGGACATGTTCTAA 74
||||||| |||||||||||||| ||||| | || |||||||||||||||||| |||| |
Sbjct 4 AAATGTTGTTGATTGTGTTGTGTCTCTCTCTCTCTCCCTTTAAATCTGGACATCTTCTGA 63
Query 75 TCTCACACTCTCTTTCTTCTTTGAACCTCTCCACCACGATGAAGCACAAAGTCTCCAAAC 134
||| ||||||| ||||| || ||| ||||||||||||||||||||||||||||||||
Sbjct 64 TCT--CACTCTC--TCTTCCTTCAACATCTCCACCACGATGAAGCACAAAGTCTCCAAAA 119
Query 135 GAGTAATATCTCTGAAATGGGTTCCATTTCTCTGCATCTCTTTCTTCGCTCTCGGAGCAA 194
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 120 GAGTAATATCTCTGAAATGGGTTCCATTTCTCTGCATCTCTTTCTTCGCTCTCGGAGCAA 179
Query 195 TCTTCACCTCCAGGTCATGGGAGCCGTCGTCAGATTCCGGAAGTCAGCTAATTTCACAGC 254
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 180 TCTTCACCTCCAGGTCATGGGAGCCGTCGTCAGATTCCGGAAGTCAGCTAATTTCACAGC 239
Query 255 AT-CATCGTGATCATGAACTTCAGATTGTATCTGACGATTGTGCTCATAATAAAAAAGCT 313
| | ||||||||||||||||||||||||||| ||||||||| |||||||||||||||||
Sbjct 240 -TCCGTCGTGATCATGAACTTCAGATTGTATCAGACGATTGTTCTCATAATAAAAAAGCT 298
Query 314 ACACAAGAAAAAGATGTAACTGGCGAAGTTTTGAGAACTCATGAAGCTATACAGGATGAC 373
|| |||||||||||||||| || | ||||||||| |||||| ||||| ||||||| ||||
Sbjct 299 ACTCAAGAAAAAGATGTAATTGACCAAGTTTTGACAACTCACGAAGCAATACAGGGTGAC 358
Query 374 AGGTCGTTGGATAAGTCAGTTTCTACACTT----T-C---T----TCTACAAGGAGCTCT 421
||||||||||||||||| |||||||| ||| | | | ||||||| || ||||
Sbjct 359 AGGTCGTTGGATAAGTCGGTTTCTACGCTTGAAATGCAGTTGGCCTCTACAAAGACCTCT 418
Query 422 CAAGA--GAT-GG--TTGA-TGGCTC-GGAA----ACAAA-CCCGAGGAAGAAAGTGTTT 469
||||| | | || | ||| || | ||| |||||||||||||||||||
Sbjct 419 CAAGATGGCTCGGAAACAACCAACTCTTTAACGGGAGAAACCCCGAGGAAGAAAGTGTTT 478
Query 470 ATGGTAATGGGAATCAATACCGCATTTAGCAGTAGAAAACGGCGTGATTCAGTTAGAGAA 529
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 479 ATGGTAATGGGAATCAATACCGCATTTAGCAGTAGAAAACGGCGTGATTCAGTTAGAGAA 538
Query 530 ACATGGATGCCTCAAGGTGAGAAGCTTGAAAGACTGGAACAGGAGAAGGGGATTGTGATC 589
|| |||||||||||||| ||||||||||||| ||| ||||| || ||||| ||||| |||
Sbjct 539 ACCTGGATGCCTCAAGGGGAGAAGCTTGAAAAACTAGAACAAGACAAGGGAATTGTCATC 598
Query 590 AAGTTCATGATTGGACACAGTGCGACGTCAAATAGTATATTGGATAGAGCTATTGATTCA 649
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 599 AAGTTCATGATTGGACACAGTGCGACGTCAAATAGTATATTGGATAGAGCTATTGATTCA 658
Query 650 GAAGATGCTCAACACAAAGACTTCCTTAGGCTGGAGCATGTTGAAGGATATCACGAACTC 709
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 659 GAAGATGCTCAACACAAAGACTTCCTTAGGCTGGAGCATGTTGAAGGATATCACGAACTC 718
Query 710 TCAGCAAAAACCAAGATATTCTTTTCCACTGCAGTAGCCAAATGGGATGCAGAGTTCTAT 769
||||||||||||||||||||||||||||||||| |||| |||||||||||||||||||||
Sbjct 719 TCAGCAAAAACCAAGATATTCTTTTCCACTGCATTAGCAAAATGGGATGCAGAGTTCTAT 778
Query 770 ATCAAGGTAGATGATGATGTTCACGTCAATCTCGGTATGCTTGCTTCCACACTTGCCCGT 829
|||||||| ||||||||||| |||||||||||||||||||| ||||||||||||||||||
Sbjct 779 ATCAAGGTCGATGATGATGTACACGTCAATCTCGGTATGCTGGCTTCCACACTTGCCCGT 838
Query 830 CACCGCTCAAAGCCGAGGGTTTATATTGGTTGTATGAAGTCAGGGCCTGTTCTTGCTCAG 889
|||||||||||||||||||| |||||||| |||||||| ||||||||||||||||||||
Sbjct 839 CACCGCTCAAAGCCGAGGGTCTATATTGGGTGTATGAAATCAGGGCCTGTTCTTGCTCA- 897
Query 890 AATTTATTGAACTGTTTCAGGACAGTAAAGTACCATGAACCTGAGTATTGGAAATTTGGA 949
|| | || | || |||||||||||||||||||||||||||||||||||
Sbjct 898 AA---A--GA-C------AG-----TAAAGTACCATGAACCTGAGTATTGGAAATTTGGA 940
Query 950 GAGGATGGTAACAAATACTTTCGACATGCTACAGGACAGATCTATGCCATCTCCAAGGAT 1009
||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct 941 GAGGATGGTAACAAATACTTTCGACATGCTACAGGACAGATCTATGCCATCTCGAAGGAT 1000
Query 1010 CTTGCTAATTACATATCCATCAACCAGCCAATTTTGCATAAGTATGCCAATGAAGATGTG 1069
||||| || |||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct 1001 CTTGCCAAATACATATCCATCAACCAGCCAATTTTGCATAAGTATGCAAATGAAGATGTG 1060
Query 1070 TCTTTAGGGTCATGGTTTATCGGTCTTGAGGTTGAACATATTGATGACCGCAACTTCTGT 1129
||||| |||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct 1061 TCTTTGGGGTCATGGTTTATCGGTCTTGAGGTTGAACATATTGATGACCGCAACTTTTGT 1120
Query 1130 TGTGGGACTCCTCCAGATTGTAGATGGAAGGCAGAGGCGGGCGATGTTTGTGTGGCCTCA 1189
||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct 1121 TGTGGGACTCCTCCAGATTGTAGATGGAAGGCAGAGGCGGGCGATGTGTGTGTGGCCTCA 1180
Query 1190 TTCGAATGGAGCTGTAGTGGGATTTGCAAGTCCGTAGAGAGAATGAAGATAGTGCATGAA 1249
|||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct 1181 TTCGAATGGAGCTGTAGTGGGATTTGCAAGTCGGTAGAGAGAATGAAGATAGTGCATGAA 1240
Query 1250 GTTTGTAGTGAAGGAGAAGGAGCTGTTTGGAATACGCTTCTGTAAAAGATCATTTCAGTT 1309
|| |||||||||||||||||||| ||||||||||| ||||| |||||||| |||||||||
Sbjct 1241 GTATGTAGTGAAGGAGAAGGAGCAGTTTGGAATACACTTCTCTAAAAGAT-ATTTCAGTT 1299
Query 1310 CCCAATCAGCCAAGTGGTTCCAATACTAAACATA-ACT--T---T--GATAGAC-TGCTA 1360
|||||||||| |||||| ||||||||||||||| ||| | | ||||||| | |||
Sbjct 1300 CCCAATCAGCTAAGTGGAGCCAATACTAAACATACACTCATAACTTTGATAGACGT-CTA 1358
Query 1361 CAAGAAAGGGAAAGAGAGAGCAAGAGAGGAGAAGGCAAATTTTGTAAAGAAGAACCAAAG 1420
||||||||||||||| ||||||||||||||| |||||||||||||||||||||||||||
Sbjct 1359 TAAGAAAGGGAAAGAGGGAGCAAGAGAGGAGATGGCAAATTTTGTAAAGAAGAACCAAAG 1418
Query 1421 GTATACAAATCATATACTTGAGAATATATTTGCTTAGTTGTTGTT------GTGTGATTG 1474
|||||||||||| ||||||||||||||||| |||||||||||||| | |||||||
Sbjct 1419 GTATACAAATCACATACTTGAGAATATATT-GCTTAGTTGTTGTTAAAACAGAGTGATTG 1477
Query 1475 GCTTTGTTGTTTCTTCTACTTGAGTTAGATCATGTTAGTATAATCTTGGACAAAAGGGCA 1534
||||||||||||||||||||||||||||||||||||||| ||||||| || |||| | ||
Sbjct 1478 GCTTTGTTGTTTCTTCTACTTGAGTTAGATCATGTTAGTGTAATCTTCGAAAAAAAGCCA 1537
Query 1535 AATGAGCTAAAAAATGCATAACTAAAGAATTTTCAGACAAC---TATTATT---CCCTTG 1588
||||||||||||| ||||||||||||||||||||||||||| ||||||| ||||||
Sbjct 1538 AATGAGCTAAAAA-TGCATAACTAAAGAATTTTCAGACAACCACTATTATTATTCCCTTG 1596
Query 1589 GTCAGATTTTAGACACAATTGATGAATATATACACTTATGC 1629
||||||||||||||||||||||||||||| |||||||||||
Sbjct 1597 GTCAGATTTTAGACACAATTGATGAATATTTACACTTATGC 1637
> Ahg476946 jgi|Araly1|476946|fgenesh2_kg.2__2076__AT1G77800.1
Length=5109
Score = 86.1 bits (46), Expect = 8e-16
Identities = 48/49 (98%), Gaps = 0/49 (0%)
Strand=Plus/Minus
Query 1583 CCCTTGGTCAGATTTTAGACACAATTGATGAATATATACACTTATGCAA 1631
||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct 5109 CCCTTGGTCAGATTTTAGACACAATTGATGAATATTTACACTTATGCAA 5061
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 61134843225
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5