BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: halleri_transcript_ahg.fa
           32,672 sequences; 38,939,717 total letters



Query= AT1G77830.1

Length=558
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  Ahg927185 jgi|Araly1|927185|scaffold_202746.1                        357    5e-98


> Ahg927185 jgi|Araly1|927185|scaffold_202746.1
Length=376

 Score =  357 bits (193),  Expect = 5e-98
 Identities = 225/240 (94%), Gaps = 4/240 (2%)
 Strand=Plus/Plus

Query  321  CAGACCT-GTACCAATTGCTCCACCAACGACGGAGATCGTAGATTGTTACCAAAGTTCGG  379
            |||| || |||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct  119  CAGA-CTCGTACCAATTGCTCCACCAACAACGGAGATCGTAGATTGTTACCAAAGTTCGG  177

Query  380  AATCT-TGTTGTCTCTGTCAAAAAGGGTATCCGAAAGAAGACGAGATTGTTCATAAAACA  438
            ||| | |||||||||||| |||||||||||||||||||| ||||||||||||||||||||
Sbjct  178  AAT-TGTGTTGTCTCTGTGAAAAAGGGTATCCGAAAGAAAACGAGATTGTTCATAAAACA  236

Query  439  AAATGCAATCATATTTTTTACGGAACTTGTATCTCTCGTTACTTGTTGCACACTCCTCGA  498
            ||||||||||| || ||| ||| |||||||||||||||||||||||||||||||||||||
Sbjct  237  AAATGCAATCACATGTTTCACGCAACTTGTATCTCTCGTTACTTGTTGCACACTCCTCGA  296

Query  499  TGCCCTGTTTGCTCCGTTGAGTTGCCACCTGTCGACATCCGAACTTTTCTCTTCATCTAA  558
            ||||||||||||||||||||||| ||||||| ||||||||||||| |||||||| |||||
Sbjct  297  TGCCCTGTTTGCTCCGTTGAGTTACCACCTGCCGACATCCGAACTCTTCTCTTCTTCTAA  356



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 20375084526


  Database: halleri_transcript_ahg.fa
    Posted date:  Sep 25, 2014  2:02 AM
  Number of letters in database: 38,939,717
  Number of sequences in database:  32,672



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5