BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT1G77840.1
Length=1788
Score E
Sequences producing significant alignments: (Bits) Value
Ahg476949 jgi|Araly1|476949|fgenesh2_kg.2__2079__AT1G77840.1 2237 0.0
> Ahg476949 jgi|Araly1|476949|fgenesh2_kg.2__2079__AT1G77840.1
Length=1583
Score = 2237 bits (1211), Expect = 0.0
Identities = 1441/1550 (93%), Gaps = 24/1550 (2%)
Strand=Plus/Plus
Query 98 ACGAATCGAATTTTGAAGCTTTCTTTTATGTCTGACAAGATATCTCCGTTTTGTTGTCAA 157
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 12 ACGAATCGAATTTTGAAGCTTTCTTTTATGTCTGACAAGATATCTCCGTTTTGTTGTCAA 71
Query 158 TCTGGTTGCTTGGAAAACAC-AGTCCTACATCCAGAATTAAGGACTACTACTAGTTCCTC 216
||||||||||||| |||||| | |||||||||||||||||||||||||||||||||||||
Sbjct 72 TCTGGTTGCTTGGTAAACACTA-TCCTACATCCAGAATTAAGGACTACTACTAGTTCCTC 130
Query 217 CATCACTTTAGGGTCTCGCATCTTCAAACCGGAGATCCCTCCTCTTTCTCTCCACTTTTT 276
|||||||||||| ||||||||||||||||||||||||| |||| ||||| |||| |||||
Sbjct 131 CATCACTTTAGGTTCTCGCATCTTCAAACCGGAGATCCTTCCTATTTCTGTCCAGTTTTT 190
Query 277 TAGCTAAGAAGAATGGCGCTGCAGAACATTGGTGCTTCCAACCGTAACGATGCCTTCTAC 336
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 191 GAGCTAAGAAGAATGGCGCTGCAGAACATTGGTGCTTCCAACCGTAACGATGCCTTCTAC 250
Query 337 AGGTACAAGATGCCTAAGATGGTTACCAAAACCGAAGGCAAAGGTAATGGCATTAAGACC 396
||||||||||||||||||||||||||||| || |||||||||||||||||||||||||||
Sbjct 251 AGGTACAAGATGCCTAAGATGGTTACCAAGACTGAAGGCAAAGGTAATGGCATTAAGACC 310
Query 397 AACATTATCAACAATGTTGAGATTGCCAAAGCCTTGGCTAGACCGCCTTCTTATACGACC 456
||||||||||| |||||||||||||||||||||||||| ||||| ||||||||||| ||
Sbjct 311 AACATTATCAATAATGTTGAGATTGCCAAAGCCTTGGCGAGACCTCCTTCTTATACCACA 370
Query 457 AAGTACTTTGGTTGTGAGCTTGGAGCGCAGTCTAAGTTTGATGAGAAGACTGGGACGTCG 516
|||||||||||||| |||||||| ||||||||||| ||||| |||||||||||||| |||
Sbjct 371 AAGTACTTTGGTTGCGAGCTTGGGGCGCAGTCTAAATTTGACGAGAAGACTGGGACTTCG 430
Query 517 CTTGTGAATGGAGCTCACAACACGTCTAAGCTTGCTGGGCTTTTGGAGAATTTTATTAAG 576
||||||||||| ||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct 431 CTTGTGAATGGGGCTCACAACACGTCTAAGCTTGCTGGGCTTTTGGAGAATTTCATTAAG 490
Query 577 AAGTTTGTTCAGTGTTATGGATGTGGTAACCCGGAGACTGAGATTATTATTACGAAGACG 636
|||| ||| ||||| ||||||||||||||||||||||||||||| ||||| || ||||||
Sbjct 491 AAGTATGTCCAGTGCTATGGATGTGGTAACCCGGAGACTGAGATCATTATCACAAAGACG 550
Query 637 CAGATGGTGAATCTCAAGTGTGCTGCTTGTGGGTTTATCTCTGAGGTCGACATGAGGGAT 696
||||||||||||||||||||||||||||| ||||||||||||||||| |||||||||||
Sbjct 551 CAGATGGTGAATCTCAAGTGTGCTGCTTGCGGGTTTATCTCTGAGGTTGACATGAGGGAC 610
Query 697 AAGTTGACTAATTTCATTCTCAAGAACCCACCTGAGCAGAAGAAGGTGTCAAAGGATAAG 756
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct 611 AAGTTGACTAATTTCATTCTCAAGAACCCACCTGAGCAGAAGAAGGTGTCAAAGGACAAG 670
Query 757 AAAGCAATGAGGAAAGCTGAGAAGGAGAGGCTTAAAGAAGGCGAGCTAGCTGATGAGGAG 816
||||||||||| ||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct 671 AAAGCAATGAGAAAAGCTGAGAAGGAGAGGCTTAAAGAAGGCGAGCTGGCTGATGAGGAG 730
Query 817 CAGAGAAAGCT---GAA--A-GCTAAGAAGAAAGCATTGTCTAACGGCAAGGAT--T-C- 866
||||||||||| ||| | |||||||||||||||||||||||||| |||||| | |
Sbjct 731 CAGAGAAAGCTCAAGAAGGAAGCTAAGAAGAAAGCATTGTCTAACGGGAAGGATGCTTCG 790
Query 867 T--AAGACGTCTAAGAACCATTCTTCTGATGAGGATATAAGCCCGAAGCATGATGAGAAT 924
| ||||| || |||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct 791 TCTAAGACTTCCAAGAACCATTCTTCTGATGAGGATATAAGCCCAAAGCATGATGAGAAT 850
Query 925 GCTCTAG-AGGTGGATGAGGATGAAGATGATGATGATGGTGTCGAGTGGCAAACTGATAC 983
|| | || | ||||||||||||||||| ||||||||||||||| ||||||||||||||||
Sbjct 851 GCAC-AGGATGTGGATGAGGATGAAGACGATGATGATGGTGTCCAGTGGCAAACTGATAC 909
Query 984 TTCCCGAGAAGCTGCTGAGAAAAGAATGATGGAACAGTTGAGTGCTAAAACTGCCGAAAT 1043
||||||||||||||||||||||||||||| |||||||||||| || ||||| ||||||
Sbjct 910 TTCCCGAGAAGCTGCTGAGAAAAGAATGAAAGAACAGTTGAGTCCTGTAACTGTCGAAAT 969
Query 1044 GGTGATGCTCTCTGCAATGGAAGTAGAAGAGAAAAAGGCGCCCAAAAGCAAATCTAACGG 1103
||||||||||||| || |||||| |||||||||||||||||||||||||||| | || ||
Sbjct 970 GGTGATGCTCTCTACAGTGGAAGCAGAAGAGAAAAAGGCGCCCAAAAGCAAACCGAATGG 1029
Query 1104 GAACGTTGTGAAAACTGAGAATCCTCCTCCGCAAGAGAAGAATCTCGTGCAGGATATGAA 1163
| | |||||||||||||||| | | | |||||||||||||||||||||||||||||||||
Sbjct 1030 GGATGTTGTGAAAACTGAGA-TAC-C-TCCGCAAGAGAAGAATCTCGTGCAGGATATGAA 1086
Query 1164 AGAGTATCTGAAGAAAGGGTCACCAATAAGCGCGCTCAAAAGTTTCATCTCGTCTCTCTC 1223
|||||||||||||||||||||||||||||||| | |||| ||||||||||| ||||||||
Sbjct 1087 AGAGTATCTGAAGAAAGGGTCACCAATAAGCGAGTTCAAGAGTTTCATCTCCTCTCTCTC 1146
Query 1224 TGAACCTCCTCAAGACATCATGGACGCACTCTTCAATGCTCTCTTTGATGGTGTGGG-AA 1282
||| ||||| ||||||||||| |||||||||||||||||||||||||| || ||||| ||
Sbjct 1147 TGATCCTCCACAAGACATCATAGACGCACTCTTCAATGCTCTCTTTGACGGCGTGGGCAA 1206
Query 1283 AGGGATTCGCCAAAGAAGTGACT-AAGAAGAAGAATTACTTAGCGGCTGCTGCAACAATG 1341
||| |||| |||||||||||| | ||||||||||| |||||||||||||||||||||| |
Sbjct 1207 AGG-ATTCTCCAAAGAAGTGA-TGAAGAAGAAGAACTACTTAGCGGCTGCTGCAACAACG 1264
Query 1342 CAAGAGGATGGATCACAGATGCATCTGCTCAATTCGATTGGGACATTCTGTGGAAAGAAT 1401
||||||||| |||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct 1265 CAAGAGGATAGATCACAGATGCATCTGCTCAATTCGATCGGGACATTCTGTGGAAAGAAT 1324
Query 1402 GGAAACGAAGAAGCTTTGAAAGAGGTGGCTCTGGTTCTTAAAGCATTGTACGACCAAGAC 1461
|||||||||||||| ||||||||||||||||||||||| |||||||||||||||||||||
Sbjct 1325 GGAAACGAAGAAGCGTTGAAAGAGGTGGCTCTGGTTCTCAAAGCATTGTACGACCAAGAC 1384
Query 1462 ATCATTGAGGAAGAGGTAGTGTTGGATTGGTACGAAAAGGGTCTCACCGGAGCTGACAAA 1521
||||||||||||||| | |||||||||||||| ||||||||||||||||||| |||||||
Sbjct 1385 ATCATTGAGGAAGAGTTTGTGTTGGATTGGTATGAAAAGGGTCTCACCGGAGTTGACAAA 1444
Query 1522 AGCTCGCCGGTTTGGAAGAATGTTAAGCCTTTTGTGGAGTGGCTTCAGAGCGCTGAGTCT 1581
||||| |||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct 1445 AGCTCCCCGGTTTGGAAGAATGTTAAGCCTTTTGTGGAGTGGCTCCAGAGCGCTGAGTCA 1504
Query 1582 GAGTCCGAAGAGGAGGATTGAGTCACTTTTTTCTTCCCTCCTAACT-TTT 1630
|||||||||||||| ||||||| || ||||||||| |||| | ||| |||
Sbjct 1505 GAGTCCGAAGAGGAAGATTGAGACATTTTTTTCTTTCCTCTTTACTGTTT 1554
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 67115011690
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5