BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT1G77855.1
Length=1162
Score E
Sequences producing significant alignments: (Bits) Value
Ahg316696 jgi|Araly1|316696|fgenesh1_pm.C_scaffold_2001729 1493 0.0
Ahg912055 jgi|Araly1|912055|Al_scaffold_0001_2309 436 1e-121
> Ahg316696 jgi|Araly1|316696|fgenesh1_pm.C_scaffold_2001729
Length=963
Score = 1493 bits (808), Expect = 0.0
Identities = 913/963 (95%), Gaps = 9/963 (1%)
Strand=Plus/Plus
Query 131 ATGGATCAGTCTTGTTCAAACTCAGTAAACGGATTCTACTCGTTTCTAAACAGATCAATG 190
||||||||||||||| ||||||||||||| ||||||||||||||||||||||||||||||
Sbjct 1 ATGGATCAGTCTTGTACAAACTCAGTAAATGGATTCTACTCGTTTCTAAACAGATCAATG 60
Query 191 GAAGATCTCGAAAGGGTTTATATCTCCAACAACTTCATGTCCTTACAGTTCCTACAGAGA 250
|||||||||||||| |||||| | |||||||||||||||||||||||||| |||||||||
Sbjct 61 GAAGATCTCGAAAGAGTTTATCTTTCCAACAACTTCATGTCCTTACAGTTTCTACAGAGA 120
Query 251 GTCATCTGTCTTCTAAGAACCTCTCACTCTCATCTCACACTTCTTGTCCAGAAACTTAAC 310
|| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 121 GTGATCTGTCTTCTAAGAACCTCTCACTCTCATCTCACACTTCTTGTCCAGAAACTTAAC 180
Query 311 CTCCCTGTCGGTGACAAGTGGCTTGACGACTACATGGACGAAACTTCCAAGCTTTGGGAC 370
||||||||||||||||||||||| |||||||||||||||||||| |||||||||||||||
Sbjct 181 CTCCCTGTCGGTGACAAGTGGCTCGACGACTACATGGACGAAACCTCCAAGCTTTGGGAC 240
Query 371 GTCTGCCACGTCATCAAATCCGCTATCTCCACCATCGAAAGCTTTTGCTCCTCCGCTATC 430
|||||||||||||||||||||||||||||| ||||||||||||||||||||||||| ||
Sbjct 241 GTCTGCCACGTCATCAAATCCGCTATCTCCTCCATCGAAAGCTTTTGCTCCTCCGCGATT 300
Query 431 TCCATCACCTCCACCCTCGACGGCCACTACCACCACCGTCGTCTCCTCTCCCCTCAGATT 490
||||| |||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct 301 TCCATTACCTCCACCCTCGACGGCCACTACCACCACCGTCGTCTCCTCTCCCCTCAAATT 360
Query 491 TCCCGGCAGGTGATACGAGCGATATCTGGATGTAGGAGAGAAGCGGTGGGGATAGAAGAA 550
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 361 TCCCGGCAGGTGATACGAGCGATATCTGGATGTAGGAGAGAAGCGGTGGGGATAGAAGAA 420
Query 551 GAAAACAGAGCATTAATGGAGAATCGTATTCAAAGGTTTCCTTTTTGGTCGGAGCAAGTT 610
|||||||||||||| |||||||||||||||||||||||||| ||||||||||||||||||
Sbjct 421 GAAAACAGAGCATTGATGGAGAATCGTATTCAAAGGTTTCCGTTTTGGTCGGAGCAAGTT 480
Query 611 ACTACGACGGGGATGGAGTCTTCCAAGATACAGAACGGTTTCAGCGGTTTCAGAGGAGTG 670
|||||||||| ||||||||||||||||||||| ||||| |||||||||||| ||||||||
Sbjct 481 ACTACGACGGCGATGGAGTCTTCCAAGATACAAAACGGATTCAGCGGTTTCCGAGGAGTG 540
Query 671 ATGAACACTATGAAGAACATAAACTCGTTACTTCTCGTGATCTTGATGCAAGGTCTTGTT 730
|||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 541 ATGAACACGATGAAGAACATAAACTCGTTACTTCTCGTGATCTTGATGCAAGGTCTTGTT 600
Query 731 TATTACATTCCCGGAGACACGACGG---------TTCCGACGGGGACGATGATGAGGTTA 781
||||| || |||||||||||||||| ||||| |||| |||||| ||||||||
Sbjct 601 TATTATATCCCCGGAGACACGACGGCAGCGACGGTTCCGCCGGGAACGATGGTGAGGTTA 660
Query 782 AAGCAGAGAGTGGCGGCGGAAATGGAGAGGATAGGGGTGAGGAAAGGAATGATGATGTAC 841
|||||||||||||||||||||||||||||||| ||| |||||||||| |||||||||||
Sbjct 661 AAGCAGAGAGTGGCGGCGGAAATGGAGAGGATTGGGATGAGGAAAGGGATGATGATGTAT 720
Query 842 GAGTATAGGAGAAGCAAGACGGCGATGGAGGAGCTTAAGGTGGAGCTGGAACGGCGGTGT 901
||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct 721 GAGTATAGGAGAAGCAAGACGGCGATGGAGGAGCTTAAGACGGAGCTGGAACGGCGGTGT 780
Query 902 TGCGGCGGCggaggagaggaggaggcggtggagaaggggttgagagagagaattgagaAT 961
||||| || ||| ||||||||||||||| |||||||||||||||||| ||| ||||||||
Sbjct 781 TGCGGAGGAGGACGAGAGGAGGAGGCGGCGGAGAAGGGGTTGAGAGAAAGAGTTGAGAAT 840
Query 962 TTGAAAGGAAGTGTTGGGAGTTTGAGGAATGGAACAGAGAGTATTGTTGCTCAGATTGAT 1021
|||||||| ||| |||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct 841 TTGAAAGGGAGTATTGGGAATTTGAGGAATGGAACAGAGAGTATTGTTGCTCAGATTGAT 900
Query 1022 GATTTCTTTGATGATATTGTTGATGGTAGGAAAATGCTTTTGGATTATTGTAGCCACAGG 1081
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 901 GATTTCTTTGATGATATTGTTGATGGTAGGAAAATGCTTTTGGATTATTGTAGCCACAGG 960
Query 1082 TGA 1084
|||
Sbjct 961 TGA 963
> Ahg912055 jgi|Araly1|912055|Al_scaffold_0001_2309
Length=1005
Score = 436 bits (236), Expect = 1e-121
Identities = 444/542 (82%), Gaps = 24/542 (4%)
Strand=Plus/Plus
Query 131 ATGGATCAGTCTTGTTCAAACTCAGTAAACGGATTCTACTCGTTTCTAAACAGATCAATG 190
||||||| ||| | | |||||||||| |||||||||||||| ||||||||||||||||||
Sbjct 1 ATGGATCCGTCCTCTGCAAACTCAGTGAACGGATTCTACTCATTTCTAAACAGATCAATG 60
Query 191 GAAGATCTCGAAAGGGTTTATATCTCCAACAACTTCATGTCCTTACAGTTCCTACAGAGA 250
|||||||||||||| |||||| | || ||||| ||||||||| |||| ||| ||||||||
Sbjct 61 GAAGATCTCGAAAGAGTTTATCTTTCAAACAATTTCATGTCCGTACACTTCTTACAGAGA 120
Query 251 G-TCATCTGTCTTCTAAGAACCTCTCACTCTCATCTCACACTTCTT-GTCCAGAAACTT- 307
| || |||||||||| | ||||||||||| |||||||| || ||| || || ||||||
Sbjct 121 GCTC-TCTGTCTTCTTCGTACCTCTCACTCACATCTCACTCT-CTTAGTTCAAAAACTTC 178
Query 308 AACCTCCCTGTCGGTGACAAGTGGCTTGACGACTACATGGACGAAA-CTTCCAAGCTTTG 366
||| |||| ||||||||||| ||||| || || || |||||||||| || | || |||||
Sbjct 179 AACTTCCC-GTCGGTGACAAATGGCTCGATGAGTATATGGACGAAAGCT-CTAAACTTTG 236
Query 367 GGACGTCT-GCCACGTCATCAAATCCGCTATCTCCACCATCGAAAGCTTTTGCTCCTCCG 425
||| | || | | |||||||||||||||| |||| || |||||| ||| | |||| |||
Sbjct 237 GGAAG-CTTGTCTCGTCATCAAATCCGCTGTCTCTTCCGTCGAAAACTTCTCCTCCGCCG 295
Query 426 CTATCTCCATCACCTCCACCCTCGACGGCCA-CTACCACCACCGTCGTCTCCTCTCCCCT 484
|| || ||| | || || ||||| || || | ||||||||||||||||| ||||| |
Sbjct 296 GAATTTCAATCGCGTCGACACTCGATGGTCATC-ACCACCACCGTCGTCTC-TCTCC--T 351
Query 485 CAGATTTCCCGGCAGGTGATACGAGCGATATCTGGATGTAGGAGAGAAGCGGTGGGGATA 544
||| |||| || ||||||||| | || ||||| |||||||| ||||||||| | ||||||
Sbjct 352 CAGCTTTCTCGTCAGGTGATAAGGGCAATATCAGGATGTAGAAGAGAAGCGATTGGGATA 411
Query 545 GAAGAAGAAAACAGAGCATTAATGGAGAATCGTA-TTCAAAGGTTTCCTTTTTGGTCGGA 603
|| |||||||||||||| |||||||||||||| | ||||||||||||| |||||||||||
Sbjct 412 GAGGAAGAAAACAGAGCTTTAATGGAGAATCG-AGTTCAAAGGTTTCCGTTTTGGTCGGA 470
Query 604 GCAA--GTTACTACGACGGGGATGGAGTCTTC--C-AAGATACAGAACGGTTTCAGCGGT 658
||| || | |||||| ||| || || || | ||| |||| ||||| ||||| |||
Sbjct 471 ACAAACGT--CGGCGACGGCGATAGAATCGTCGACGAAGTTACAAAACGGATTCAGTGGT 528
Query 659 TT 660
||
Sbjct 529 TT 530
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 43345756629
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5