BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: halleri_transcript_ahg.fa 32,672 sequences; 38,939,717 total letters Query= AT1G77860.1 Length=1056 Score E Sequences producing significant alignments: (Bits) Value Ahg909412 jgi|Araly1|909412|Al_scaffold_0002_2493 1724 0.0 > Ahg909412 jgi|Araly1|909412|Al_scaffold_0002_2493 Length=1056 Score = 1724 bits (933), Expect = 0.0 Identities = 1016/1057 (96%), Gaps = 2/1057 (0%) Strand=Plus/Plus Query 1 ATGGAGGTTCCTACAGAGTCAAAGACGACGCAGATCGATGAAATCTCTCACAATCTCTCG 60 |||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| Sbjct 1 ATGGAGGTTCCTACAGAGCCAAAGACGACGCAGATCGATGAAATCTCTCACAATCTCTCG 60 Query 61 TTTACCACTTCTAACGCCGGCGATTCTAGCTGGGACAAGATCTCATTCTTCCGTCACCGT 120 ||| ||||||| |||||||||||||||||||||||||| ||||| ||||||||||||||| Sbjct 61 TTTTCCACTTCCAACGCCGGCGATTCTAGCTGGGACAAAATCTCCTTCTTCCGTCACCGT 120 Query 121 TCACGGCAAATCAAACGAGACACTTGGCTTGTCTCCGTCTTCGTTCTTCTTCAGATCGTC 180 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 121 TCACGGCAAATCAAACGAGACACTTGGCTTGTCTCCGTCTTCGTTCTTCTTCAGATCGTC 180 Query 181 CTCTTCGCTGTAACTATGGGCGTCAACGATTGCTCCGGGAACTCTCACGGTCACTGCTCC 240 |||||||||||||||||||||||||||||||||||||| |||||||||||||||||| || Sbjct 181 CTCTTCGCTGTAACTATGGGCGTCAACGATTGCTCCGGTAACTCTCACGGTCACTGCGCC 240 Query 241 GCTAAACTCCTTGGCCGATTCTCTTTCCAGTCTCTCTCCGAGAATCCTATGCTTGGTCCC 300 || ||||||||||||||||||||||||||| |||||||||||||||||||||| |||||| Sbjct 241 GCCAAACTCCTTGGCCGATTCTCTTTCCAGCCTCTCTCCGAGAATCCTATGCTCGGTCCC 300 Query 301 TCCGCCTCAACGTTAGAGCATATGGGAGGTCTTTCTTGGAA-AGCTCTGACGGAGAATCA 359 ||||||||||||||||||||||||||||||||||||||||| | |||||||||||||||| Sbjct 301 TCCGCCTCAACGTTAGAGCATATGGGAGGTCTTTCTTGGAATA-CTCTGACGGAGAATCA 359 Query 360 TGAGATTTGGCGTATTTTGACATCTCCATGGCTGCACAGTGGATTATTTCATCTATTCAT 419 ||||||||||||||||||||||||||| ||||||||||||||||| |||||||||||||| Sbjct 360 TGAGATTTGGCGTATTTTGACATCTCCGTGGCTGCACAGTGGATTGTTTCATCTATTCAT 419 Query 420 AAATCTTGGGAGTTTGATTTTCGTAGGGATATACATGGAGCAACAGTTTGGACCATTGAG 479 ||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| Sbjct 420 AAATCTTGGGAGTTTGATTTTCGTAGGGATATACATGGAGCAACAATTTGGACCATTGAG 479 Query 480 GATTGCAGTCATATACTTCCTCTCTGGCATTATGGGTAGTCTGTTTGCTGTGTTGTTTGT 539 |||||||||||||||| | ||||||||||||||||||||||||||||||||||||||||| Sbjct 480 GATTGCAGTCATATACCTACTCTCTGGCATTATGGGTAGTCTGTTTGCTGTGTTGTTTGT 539 Query 540 TCGGAACATCCCATCAATCTCTTCTGGTGCTGCTTTCTTTGGGTTGATTGGAGCCATGCT 599 ||| |||||| ||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 540 TCGAAACATCTCATCAATCTCTTCTGGTGCTGCTTTCTTTGGGTTGATTGGAGCCATGCT 599 Query 600 TTCTGCACTTGCAAAGAACTGGAATCTATATAACAGCAAGATTTCAGCCTTGGCGATAAT 659 |||||||||||||||||||||||||||||||| | |||||||||||||||||| |||||| Sbjct 600 TTCTGCACTTGCAAAGAACTGGAATCTATATACCGGCAAGATTTCAGCCTTGGTGATAAT 659 Query 660 ATTCACTATCTTCACTGTGAATTTCCTGATAGGCTTTCTCCCTTTCATAGACAACTTTGC 719 |||||||||||||||||||||| ||||||||||||||||||||||||||||||| ||||| Sbjct 660 ATTCACTATCTTCACTGTGAATATCCTGATAGGCTTTCTCCCTTTCATAGACAATTTTGC 719 Query 720 AAATATTGGTGGTTTCATATCAGGATTCCTCCTTGGATTTGTGCTATTGTTCAAACCACA 779 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 720 AAATATTGGTGGTTTCATATCAGGATTCCTCCTTGGATTTGTGCTATTGTTCAAACCACA 779 Query 780 ACTGAGACAGATGCCTCCATCTCATAAGGGGAAATTGTTTGAAGATGATATGAACAGATC 839 |||||||||||||||||||||||||||||| ||||||||||||||||||| ||||||||| Sbjct 780 ACTGAGACAGATGCCTCCATCTCATAAGGGAAAATTGTTTGAAGATGATACGAACAGATC 839 Query 840 CACAAGGCTTAAAGAACAGTTTGACAGACCGGTATTAAGGATTATATGCCTGCTCGTGTT 899 ||||||||||||||| |||||||| |||||||| ||| |||||||||||||| ||||||| Sbjct 840 CACAAGGCTTAAAGATCAGTTTGATAGACCGGTGTTACGGATTATATGCCTGGTCGTGTT 899 Query 900 TTGTGGAATACTTGCCGGGGTTCTATTAGCAGCATGCTGGGGAGTCAATCTCAACCGTCA 959 ||||||||| ||||| |||||||||||||||| |||||||| |||||||| |||||||| Sbjct 900 TTGTGGAATGCTTGCTGGGGTTCTATTAGCAGTGTGCTGGGGCGTCAATCTTAACCGTCA 959 Query 960 TTGCCATTGGTGTCGCTATGTTGACTGTGTTCCAACCAAAAAATGGAGCTGCAGCGACAT 1019 ||||||||||||||||||||||||||||||||||||||| | |||||||||||| ||||| Sbjct 960 TTGCCATTGGTGTCGCTATGTTGACTGTGTTCCAACCAATAGATGGAGCTGCAGTGACAT 1019 Query 1020 GACTACTTCCTGCGAGGTATATTCATCTAAACCATAA 1056 |||||||||||||||||||||||||| |||||||||| Sbjct 1020 GACTACTTCCTGCGAGGTATATTCATTTAAACCATAA 1056 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 39304727427 Database: halleri_transcript_ahg.fa Posted date: Sep 25, 2014 2:02 AM Number of letters in database: 38,939,717 Number of sequences in database: 32,672 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5