BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT1G77860.1
Length=1056
Score E
Sequences producing significant alignments: (Bits) Value
Ahg909412 jgi|Araly1|909412|Al_scaffold_0002_2493 1724 0.0
> Ahg909412 jgi|Araly1|909412|Al_scaffold_0002_2493
Length=1056
Score = 1724 bits (933), Expect = 0.0
Identities = 1016/1057 (96%), Gaps = 2/1057 (0%)
Strand=Plus/Plus
Query 1 ATGGAGGTTCCTACAGAGTCAAAGACGACGCAGATCGATGAAATCTCTCACAATCTCTCG 60
|||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct 1 ATGGAGGTTCCTACAGAGCCAAAGACGACGCAGATCGATGAAATCTCTCACAATCTCTCG 60
Query 61 TTTACCACTTCTAACGCCGGCGATTCTAGCTGGGACAAGATCTCATTCTTCCGTCACCGT 120
||| ||||||| |||||||||||||||||||||||||| ||||| |||||||||||||||
Sbjct 61 TTTTCCACTTCCAACGCCGGCGATTCTAGCTGGGACAAAATCTCCTTCTTCCGTCACCGT 120
Query 121 TCACGGCAAATCAAACGAGACACTTGGCTTGTCTCCGTCTTCGTTCTTCTTCAGATCGTC 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 121 TCACGGCAAATCAAACGAGACACTTGGCTTGTCTCCGTCTTCGTTCTTCTTCAGATCGTC 180
Query 181 CTCTTCGCTGTAACTATGGGCGTCAACGATTGCTCCGGGAACTCTCACGGTCACTGCTCC 240
|||||||||||||||||||||||||||||||||||||| |||||||||||||||||| ||
Sbjct 181 CTCTTCGCTGTAACTATGGGCGTCAACGATTGCTCCGGTAACTCTCACGGTCACTGCGCC 240
Query 241 GCTAAACTCCTTGGCCGATTCTCTTTCCAGTCTCTCTCCGAGAATCCTATGCTTGGTCCC 300
|| ||||||||||||||||||||||||||| |||||||||||||||||||||| ||||||
Sbjct 241 GCCAAACTCCTTGGCCGATTCTCTTTCCAGCCTCTCTCCGAGAATCCTATGCTCGGTCCC 300
Query 301 TCCGCCTCAACGTTAGAGCATATGGGAGGTCTTTCTTGGAA-AGCTCTGACGGAGAATCA 359
||||||||||||||||||||||||||||||||||||||||| | ||||||||||||||||
Sbjct 301 TCCGCCTCAACGTTAGAGCATATGGGAGGTCTTTCTTGGAATA-CTCTGACGGAGAATCA 359
Query 360 TGAGATTTGGCGTATTTTGACATCTCCATGGCTGCACAGTGGATTATTTCATCTATTCAT 419
||||||||||||||||||||||||||| ||||||||||||||||| ||||||||||||||
Sbjct 360 TGAGATTTGGCGTATTTTGACATCTCCGTGGCTGCACAGTGGATTGTTTCATCTATTCAT 419
Query 420 AAATCTTGGGAGTTTGATTTTCGTAGGGATATACATGGAGCAACAGTTTGGACCATTGAG 479
||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct 420 AAATCTTGGGAGTTTGATTTTCGTAGGGATATACATGGAGCAACAATTTGGACCATTGAG 479
Query 480 GATTGCAGTCATATACTTCCTCTCTGGCATTATGGGTAGTCTGTTTGCTGTGTTGTTTGT 539
|||||||||||||||| | |||||||||||||||||||||||||||||||||||||||||
Sbjct 480 GATTGCAGTCATATACCTACTCTCTGGCATTATGGGTAGTCTGTTTGCTGTGTTGTTTGT 539
Query 540 TCGGAACATCCCATCAATCTCTTCTGGTGCTGCTTTCTTTGGGTTGATTGGAGCCATGCT 599
||| |||||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 540 TCGAAACATCTCATCAATCTCTTCTGGTGCTGCTTTCTTTGGGTTGATTGGAGCCATGCT 599
Query 600 TTCTGCACTTGCAAAGAACTGGAATCTATATAACAGCAAGATTTCAGCCTTGGCGATAAT 659
|||||||||||||||||||||||||||||||| | |||||||||||||||||| ||||||
Sbjct 600 TTCTGCACTTGCAAAGAACTGGAATCTATATACCGGCAAGATTTCAGCCTTGGTGATAAT 659
Query 660 ATTCACTATCTTCACTGTGAATTTCCTGATAGGCTTTCTCCCTTTCATAGACAACTTTGC 719
|||||||||||||||||||||| ||||||||||||||||||||||||||||||| |||||
Sbjct 660 ATTCACTATCTTCACTGTGAATATCCTGATAGGCTTTCTCCCTTTCATAGACAATTTTGC 719
Query 720 AAATATTGGTGGTTTCATATCAGGATTCCTCCTTGGATTTGTGCTATTGTTCAAACCACA 779
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 720 AAATATTGGTGGTTTCATATCAGGATTCCTCCTTGGATTTGTGCTATTGTTCAAACCACA 779
Query 780 ACTGAGACAGATGCCTCCATCTCATAAGGGGAAATTGTTTGAAGATGATATGAACAGATC 839
|||||||||||||||||||||||||||||| ||||||||||||||||||| |||||||||
Sbjct 780 ACTGAGACAGATGCCTCCATCTCATAAGGGAAAATTGTTTGAAGATGATACGAACAGATC 839
Query 840 CACAAGGCTTAAAGAACAGTTTGACAGACCGGTATTAAGGATTATATGCCTGCTCGTGTT 899
||||||||||||||| |||||||| |||||||| ||| |||||||||||||| |||||||
Sbjct 840 CACAAGGCTTAAAGATCAGTTTGATAGACCGGTGTTACGGATTATATGCCTGGTCGTGTT 899
Query 900 TTGTGGAATACTTGCCGGGGTTCTATTAGCAGCATGCTGGGGAGTCAATCTCAACCGTCA 959
||||||||| ||||| |||||||||||||||| |||||||| |||||||| ||||||||
Sbjct 900 TTGTGGAATGCTTGCTGGGGTTCTATTAGCAGTGTGCTGGGGCGTCAATCTTAACCGTCA 959
Query 960 TTGCCATTGGTGTCGCTATGTTGACTGTGTTCCAACCAAAAAATGGAGCTGCAGCGACAT 1019
||||||||||||||||||||||||||||||||||||||| | |||||||||||| |||||
Sbjct 960 TTGCCATTGGTGTCGCTATGTTGACTGTGTTCCAACCAATAGATGGAGCTGCAGTGACAT 1019
Query 1020 GACTACTTCCTGCGAGGTATATTCATCTAAACCATAA 1056
|||||||||||||||||||||||||| ||||||||||
Sbjct 1020 GACTACTTCCTGCGAGGTATATTCATTTAAACCATAA 1056
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 39304727427
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5