BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT1G77870.1
Length=637
Score E
Sequences producing significant alignments: (Bits) Value
Ahg476952 jgi|Araly1|476952|fgenesh2_kg.2__2082__AT1G77870.1 880 0.0
> Ahg476952 jgi|Araly1|476952|fgenesh2_kg.2__2082__AT1G77870.1
Length=618
Score = 880 bits (476), Expect = 0.0
Identities = 578/624 (93%), Gaps = 20/624 (3%)
Strand=Plus/Plus
Query 26 GCTCTGCTCAAAGACAACGGAACTCTCTGCTT-TTCTTCTTTCTAGAGA-----T---CT 76
||||||||||||||||||||| |||||| ||| |||||||||||||||| | ||
Sbjct 1 GCTCTGCTCAAAGACAACGGATCTCTCTTCTTCTTCTTCTTTCTAGAGACTTTTTGAGCT 60
Query 77 TTTCTTGAGGTAATAATTTAAAG--ATGGGAGATGAAGATTTAATAGAATTGAAGTTCAG 134
|||||| || |||||||||||| |||||||||||||||| |||||||||||||||||
Sbjct 61 ATTCTTGTGGAAATAATTTAAAGATATGGGAGATGAAGATTGGATAGAATTGAAGTTCAG 120
Query 135 ACTCGCAGATGGTACCGACATTGGTCCAAGCAAATATAGTCAATTCATGACTGTTGCATC 194
|||||||||||| || ||||||||||||||||||||||||||| ||||||||||||||||
Sbjct 121 ACTCGCAGATGGCACTGACATTGGTCCAAGCAAATATAGTCAACTCATGACTGTTGCATC 180
Query 195 TCTCAAGGAGAAAATCATTGCTCAATGGCCTAAAGACAAAGAAAACGCACCAAAGATGAT 254
||| || |||||||||||||| ||||||||||||||||||||||||||||||||| ||||
Sbjct 181 TCTTAAAGAGAAAATCATTGCACAATGGCCTAAAGACAAAGAAAACGCACCAAAGTTGAT 240
Query 255 AAATGAGGTTAAGCTCATCAATGGTGGGAAGATACTTGAGAACAACAAAACACTTTCTGA 314
|||||||||||||||||||||||||||||||||||| |||||||||| ||||||||||||
Sbjct 241 AAATGAGGTTAAGCTCATCAATGGTGGGAAGATACTGGAGAACAACACAACACTTTCTGA 300
Query 315 AGCAAGGTCCTTAATAACTATTGGTGAACTTCCTGGAATTGTAACTACAATGCATGTTGT 374
|||||||| | | || ||||| |||||||||||||||||||||||||||||||||||||
Sbjct 301 AGCAAGGT-C--ATTACCTATTTGTGAACTTCCTGGAATTGTAACTACAATGCATGTTGT 357
Query 375 TCTTCGTCCTCCTCTCTTTGAGAAGAAAAAAGAGAAACTGCAGAATGATCCTCCAAGGAA 434
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct 358 TCTTCGTCCTCCTCTCTTTGAGAAGAAAAAAGAGAAACTGCAGAATGATCCTCCAATGAA 417
Query 435 GAGTCACTGTGTATGCTGCATTTTGTAGCTCCACTTAGAGATTTTTGATCCTTTATACA- 493
|||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct 418 GAGTCACTGTGTATGCTGCATTTTGTAGCTCCACTTAGAGATTTTTGATCCTTT-TACAT 476
Query 494 A-TTTATTCCATTGGAAAAAACTTTCCATATCTTAAAGTCTTCAACATGGATCTTCATTA 552
| ||||||||||||||||||||||| |||| ||| |||||||||||||||||||||||||
Sbjct 477 AATTTATTCCATTGGAAAAAACTTTACATAGCTTCAAGTCTTCAACATGGATCTTCATTA 536
Query 553 CCAGAATGATTTTGGTTTTT-CTTCCTTCCTTTTCTTCTTCATTGTTTATCAAAAATGGC 611
||||||||| |||||||||| ||| ||| ||||||||||||||||||||||||||||||
Sbjct 537 CCAGAATGAATTTGGTTTTTTCTT--TTCTTTTTCTTCTTCATTGTTTATCAAAAATGGC 594
Query 612 TTAAGAAAAATTACTGTGTTGTTG 635
|| |||||||||||||||||||||
Sbjct 595 TTGAGAAAAATTACTGTGTTGTTG 618
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 23331225204
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5