BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT1G77885.1
Length=1043
Score E
Sequences producing significant alignments: (Bits) Value
Ahg476953 jgi|Araly1|476953|fgenesh2_kg.2__2083__AT1G77885.1 913 0.0
> Ahg476953 jgi|Araly1|476953|fgenesh2_kg.2__2083__AT1G77885.1
Length=887
Score = 913 bits (494), Expect = 0.0
Identities = 626/684 (92%), Gaps = 32/684 (5%)
Strand=Plus/Plus
Query 309 GGTGGCAAACAAACCCACTAAATTCAGTAAAATGGAACCCACCAAATTTATCTATAAATA 368
||||||||||||| |||||||||||||||||||||||||||| |||||||||||||||||
Sbjct 218 GGTGGCAAACAAAGCCACTAAATTCAGTAAAATGGAACCCACGAAATTTATCTATAAATA 277
Query 369 AGTCCCCAAACCTCTCCCCCAAAAATGCAACAACACTCA----TCTTTCCCAATATAAG- 423
||||||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct 278 AGTCCCCAAACCTCTCCCCCAAAAATGCAACAACACTCATCTTTCTTTCCCAATATAAGT 337
Query 424 -TTT-TTACCAAACAACAACTTTTGTTTTGCCTTTCCTCAAAACATAATTTTGTCTTATT 481
||| ||||| |||| |||| ||||| ||| ||||||||||||||||||||||||
Sbjct 338 TTTTATTACCTAACAGCAAC-----TTTTG--TTT-CTCAAAACATAATTTTGTCTTATT 389
Query 482 TTCTAAACCGGTAAAAGATGTCGCTAGCTATCGCAGAAGTTTACACGGTGAGGAAGTTTC 541
| ||||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 390 TCCTAAATTGGTAAAAGATGTCGCTAGCTATCGCAGAAGTTTACACGGTGAGGAAGTTTC 449
Query 542 ACAGAGAGAGTATGAAGAAACCGGCCAAACAGACGGTTACCGGCGAGGGAGATGAAAAGA 601
|||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct 450 ACAGAGAGAGTATGAAGAAACCGGCCAAACCGACGGTTACCGGCGAGGGAGATGAAAAGA 509
Query 602 TTGGCGGAGGAAGTTTCAAGGAGGCGCCGGTGAAGTCAGGTGGGT-GTAGAAGATTCGGA 660
|| |||||||||||||||||||||||||||||| || ||||| | ||||||||||||||
Sbjct 510 CTGCCGGAGGAAGTTTCAAGGAGGCGCCGGTGAAATCTGGTGG-TAGTAGAAGATTCGGA 568
Query 661 CGGTGGTTTTTTGGGAAGCCGGGAATGAAGAAAAGCTCTGCTAAAGTTTCGGATCCCATG 720
||||||||| |||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct 569 CGGTGGTTTGTTGGAAAGCCGGGAATGAAGAAAAGCTCTGCTAAAGTTTCGGATCCCATG 628
Query 721 GCGATTGAGTGATGAAGAAGAAATTAAAActtttctcttctttgccttttttttttttct 780
||||||||||||| ||||||||| |||||| ||||||||||||| ||||||| ||| ||
Sbjct 629 GCGATTGAGTGATAAAGAAGAAACAAAAACTATTCTCTTCTTTGC-TTTTTTTCTTT-CT 686
Query 781 ttctttattttgttttatttt-cattggtctttttttaatggctttttctagtgtcttct 839
|||||||||||||||| |||| |||||||||||||| | |||||||||||||||||||||
Sbjct 687 TTCTTTATTTTGTTTTTTTTTTCATTGGTCTTTTTT-A-TGGCTTTTTCTAGTGTCTTCT 744
Query 840 ctttttctttattgggtgattttATAAATAGTCGGTAAACATTGTACAATATGAACTACA 899
||||||||||||||| |||||||||||||||||||||| | ||||| |||||||||| ||
Sbjct 745 CTTTTTCTTTATTGGATGATTTTATAAATAGTCGGTAACCGTTGTAGAATATGAACTTCA 804
Query 900 AAA-ATATGAGAAAATCTATATATGTATGTAGAATGGATGTAT-T-------CCCTAAAT 950
||| |||||||||| |||||||||||||||||| ||||||||| | ||||||||
Sbjct 805 AAATATATGAGAAA-TCTATATATGTATGTAGAGTGGATGTATATATAAATTCCCTAAAT 863
Query 951 ACCACAGCTAGTTTGATAAGTTTT 974
||||||||||||||||||||||||
Sbjct 864 ACCACAGCTAGTTTGATAAGTTTT 887
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 38809129506
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5