BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT1G77890.1
Length=2275
Score E
Sequences producing significant alignments: (Bits) Value
Ahg476954 jgi|Araly1|476954|fgenesh2_kg.2__2084__AT1G77890.1 2931 0.0
> Ahg476954 jgi|Araly1|476954|fgenesh2_kg.2__2084__AT1G77890.1
Length=2045
Score = 2931 bits (1587), Expect = 0.0
Identities = 1936/2092 (93%), Gaps = 73/2092 (3%)
Strand=Plus/Plus
Query 45 CTTCCTTAAGCTCT-T-TGCTAAATCTTCACGCAATGActctctccttcaaattcaatcc 102
||| |||||||||| | | ||||||||||||||||||||||||||||||||||||| |||
Sbjct 16 CTTGCTTAAGCTCTCTCTCCTAAATCTTCACGCAATGACTCTCTCCTTCAAATTCATTCC 75
Query 103 tccttcttctcttctattctcttcccgcttcatcctcctcctACGT-CATCCGGACGCTA 161
||||||||||||||| |||||||||||||||||||||||||||||| || ||||||||||
Sbjct 76 TCCTTCTTCTCTTCTCTTCTCTTCCCGCTTCATCCTCCTCCTACGTACA-CCGGACGCTA 134
Query 162 CGTTTCCCCGGCGCCGGCGGATTCTACCGATTCATTGCGTTAGATTTGTCACTGAGCCCT 221
|||||| ||||||||||||||||||||||||| |||||||||||||||| || ||||||
Sbjct 135 CGTTTCTCCGGCGCCGGCGGATTCTACCGATTGATTGCGTTAGATTTGTTGCTTAGCCCT 194
Query 222 AAGAATTTGGGGAATTTTGGTCTGCTTCGGCGAAGGATCGATGGAGAAATCTACCAAATG 281
|||||||||||| |||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct 195 AAGAATTTGGGGGATTTTGGTCTGCTTCGGCGAAGGATCGATGGAGAAATCTAACAAATG 254
Query 282 TGCTGTTTGCT-ACAAGTCGTTTCGTCCCTCAATCTGTGTAGATTGTGTTAATCGCGGGT 340
||||||||| | |||| ||||||||||||||||||||||||| |||||||||||||||||
Sbjct 255 TGCTGTTTG-TCACAATTCGTTTCGTCCCTCAATCTGTGTAGCTTGTGTTAATCGCGGGT 313
Query 341 TAAACGAATACAAGGTCAAGTTGGACTCGTTGAAGAGTCTTCGGGAGGTTTCGTATTTCA 400
||||||||||||| || | |||||||||||||||||| | ||||||||||||||| ||||
Sbjct 314 TAAACGAATACAAAGTTACGTTGGACTCGTTGAAGAGCCGTCGGGAGGTTTCGTACTTCA 373
Query 401 GATTAAGTGGCTTACTTGTCACAAAGGAGAAAGCAATTAGTCAACGTTGTTGGAAGGAGC 460
||||||||||||| ||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct 374 GATTAAGTGGCTTGCTTGTCACAAAGGAGAAAGCAATTAGTCAACATTGTTGGAAGGAGC 433
Query 461 TTCAGAATGAGAAGCTTGCTAAGTTGCGGGAGAAGCTTCAGCTACAAGTGGAGAAATTGC 520
||||||||||||||||||||||||||||||||| |||||||||||||| |||||||||||
Sbjct 434 TTCAGAATGAGAAGCTTGCTAAGTTGCGGGAGAGGCTTCAGCTACAAGCGGAGAAATTGC 493
Query 521 AGCAAAGCAAAAACACATTTCGGAGTCTATCTCGCAATCTGAAAGAGAGATATGGCATTA 580
|||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct 494 AGCAAAGCAAAAACACATTTCGGAGTTTATCTCGCAATCTGAAAGAGAGATATGGCATTA 553
Query 581 TTGAATCAACTAACGTTGCTTTAGAGGAGAGCCGTGTTCACCAACTAGAGAACCACTATT 640
| |||||||||||||||||||| ||| |||||||||||| |||||| |||||||||||||
Sbjct 554 TCGAATCAACTAACGTTGCTTTGGAGAAGAGCCGTGTTCGCCAACTGGAGAACCACTATT 613
Query 641 CAGATACTATTGGCAATCACTACTTGGTATATATCGATCTAACTTCGGAACGCCTTTATA 700
||||||||||||||||||||||||||||||||||||| || |||||||||||||||||||
Sbjct 614 CAGATACTATTGGCAATCACTACTTGGTATATATCGAGCTTACTTCGGAACGCCTTTATA 673
Query 701 AACAGGCTTTGGTTATGAAACAGATATGCAAATTATTCCCTTTATCCCGGGTGACAGTAG 760
||||||||||||||||||||||||||||||||||||||||||||||| |||||||| |||
Sbjct 674 AACAGGCTTTGGTTATGAAACAGATATGCAAATTATTCCCTTTATCCAGGGTGACACTAG 733
Query 761 AGGGGCAGAACAAAGATGGGTCTAG-TGTACAATATGATCAAATCTGCAATGCTCTCTTA 819
| ||||||||||||||||||| ||| || || |||||||||||||||||||||||||||
Sbjct 734 ATGGGCAGAACAAAGATGGGTTTAGCGGT-CAGTATGATCAAATCTGCAATGCTCTCTTA 792
Query 820 CCACAAGGTCTCAACCCACTCTCTGTTCCGCCAAAAGAGCTCGCAGCCTCATTAGGGTAC 879
|||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct 793 CCACAAGGTCTCAACCCACTCTCTGTTCCGCCAAAAGAGCTCGCAGCCTCTTTAGGGTAC 852
Query 880 ATGGTGCAGCTTCTGAATCTTGTTGTCCATAAGCTCTCAGTGCCTGCACTTCATAACTTG 939
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 853 ATGGTGCAGCTTCTGAATCTTGTTGTCCATAAGCTCTCAGTGCCTGCACTTCATAACTTG 912
Query 940 GGTTTCGCGGGTTCTTGTTCAAGAATATGGGAACGAGATTCTTATTGGAACTCTTATCCA 999
|||||||||||||||||||||||||||||| ||||||||||||||||||||||| ||||
Sbjct 913 GGTTTCGCGGGTTCTTGTTCAAGAATATGGCAACGAGATTCTTATTGGAACTCTCATCCG 972
Query 1000 TCTTCTCCAAGCAATGGGTATCCCCTTTTTGTACCAAT-CCATGATCACTACTCATTTGA 1058
||||| |||||| || ||||||||||||||||||| || |||||||||||||||||||||
Sbjct 973 TCTTCGCCAAGCGATAGGTATCCCCTTTTTGTACC-ATCCCATGATCACTACTCATTTGA 1031
Query 1059 AGAGAAAAGTTCATGGACGGGTAGAGATACAACCAATTTTGGTGTCACTTCGTTGAAATC 1118
|| |||||||||||||||||||| | ||||||||||||||||||||||||| ||||||||
Sbjct 1032 AGGGAAAAGTTCATGGACGGGTAAAAATACAACCAATTTTGGTGTCACTTCATTGAAATC 1091
Query 1119 AGATGGAAGTATAGAAGAAGATTATCATGACCTTGACCTTGACGTTGTTAGCCTTTCTTC 1178
|||||||||| ||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct 1092 AGATGGAAGTGTAGAAGAAGATTATCATGACCTTGAACTTGACGTTGTTAGCCTTTCTTC 1151
Query 1179 TGCCTCTCCTCATTCCGTTGAAACATTCAGAAATCTGCAGCAAGGAATTGCACATCTCAA 1238
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1152 TGCCTCTCCTCATTCCGTTGAAACATTCAGAAATCTGCAGCAAGGAATTGCACATCTCAA 1211
Query 1239 GCAAAGCGTGGCTCACTTGACTGTGTACGGATACAGGTCCCTGTCTCTGGAAGTTCCTTC 1298
||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct 1212 GCAAAGCGTGGCTCACTTGACTGTGTATGGATACAGGTCCCTGTCTCTGGAAGTTCCTTC 1271
Query 1299 CGGAACCTCGACTTTTGAAACATTTGCAAAGTTGCTGGCTACATTATCTTCACTCAAGGA 1358
|||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct 1272 TGGAACCTCGACTTTTGAAACATTTGCAAAGTTGCTGGCCACATTATCTTCACTCAAGGA 1331
Query 1359 GGTTCAGTCTGGTCTTTCCCTTGGGCTGTCAAGTTCCAACAAGCAAAGACACGAGCCGAA 1418
|||||||||| ||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct 1332 AGTTCAGTCTGCTCTTTCCCTTGGGTTGTCAAGTTCCAACAAGCAAAGACACGAGCCGAA 1391
Query 1419 CAAATCCGTGTGGAATTTGAACTCCTCAAGTTCCAGCACCTTGCTTAACAGTTCTCATAC 1478
|||||| |||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct 1392 CAAATCGGTGTGGAATTTGAACTCCTCAAGTTCCAGCACCTTGCTGAACAGTTCTCATAC 1451
Query 1479 TCAGCCAACAACGTGGAACAGTAGCTATTATAATGTTCCGAATCGAGATCCAAGCTACAT 1538
|||||||||||||||||||||| |||||||||||||||||||||||||||| ||||||||
Sbjct 1452 TCAGCCAACAACGTGGAACAGTTGCTATTATAATGTTCCGAATCGAGATCCCAGCTACAT 1511
Query 1539 GGTGGAGTTTCCTGATGTTAAAAAGGATAAAAACTCTATCGGTGAATGGAATTTGGTTGA 1598
|||||||| |||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct 1512 GGTGGAGTCTCCTGATGTTAAAAAGGATAAAAACTCTATTGGTGAATGGAATTTGGTTGA 1571
Query 1599 GTATCCTCATTCTTCACGTCAACCTAATCATCCCAACAAGTATTGATCCTTTCAAGGAAC 1658
|||||||||||||||| |||||||||||||||||| ||||||||||| | |||||||||
Sbjct 1572 TTATCCTCATTCTTCACATCAACCTAATCATCCCAAGAAGTATTGATCATCTCAAGGAAC 1631
Query 1659 CCAGATTGTCGATATGTCATTTGTTCATACCCAAGGCATCCTCAATTCTAGTGATACCTT 1718
||| ||||||||||||| | ||||||||| ||||||||| |||| | ||||||||
Sbjct 1632 CCAAATTGTCGATATGT--T-----CATACCCAAAGCATCCTCAGTTCTTGGGATACCTT 1684
Query 1719 AGAAAAACCACATATGGAGCTTTATTATTTAAATCTTTGATACCTTCTTCTGTAATTATG 1778
| | | | || | | | |||||||||||||||||||||||||||
Sbjct 1685 A-----------T-T--A--TTCA--A---A--TCTTTGATACCTTCTTCTGTAATTATG 1721
Query 1779 AAACACAGATAATTATGTAAATTAGCAGGCAATGGAGTAAATATGGTGACATTATGAGTC 1838
||||||||||||||||||||||||||| | ||||||||||||||||| | | |||||
Sbjct 1722 AAACACAGATAATTATGTAAATTAGCA---A-TGGAGTAAATATGGTGA-A--A-GAGTC 1773
Query 1839 ACTGA-TCTGCCTAATGGAGTTTGATGATACAACAATGAAGGAAGGTCATGTGCACTTGT 1897
||||| | |||| ||||||||||||||||| | ||||||||| | ||||| | |
Sbjct 1774 ACTGAAT-TGCCCAATGGAGTTTGATGATA-A-CAATGAAGGT-G---ATGTG---T-G- 1821
Query 1898 GTGACGTGAGAATATCCTCCGGCTTGTTTGGTCTTTAAAAGGAAAGGACACCACAATAAC 1957
| ||||||||||||||||||||||||||| ||||||||||||||| ||||||||||||
Sbjct 1822 G---CGTGAGAATATCCTCCGGCTTGTTTGGGCTTTAAAAGGAAAGGGCACCACAATAAC 1878
Query 1958 AATTATCAATTAGAAAACAAAAAATACTCCTTTTATTCTTAGTCACCAAACAAATAAAAT 2017
|||||||||||| |||||||||| |||||||||| ||||||||||||| |||||||| ||
Sbjct 1879 AATTATCAATTA-AAAACAAAAA-TACTCCTTTT-TTCTTAGTCACCAGACAAATAATAT 1935
Query 2018 CAGCTCCTTTTTTCATACCACACAATGGGAACAAAAGCAATGATAA-A-A-GAAGCCCAT 2074
||||||||||| | ||||||||||||||||||||||||||||||| | | |||||||||
Sbjct 1936 AAGCTCCTTTTT-CGTACCACACAATGGGAACAAAAGCAATGATAAGAGAAGAAGCCCAT 1994
Query 2075 CACCTTCCTTTGCTTTTAAATTATTCATAATTTATGAAAGAAACaaaaaaaa 2126
|||||||||||||||||||||||||||||||| |||||| | |||||||||
Sbjct 1995 CACCTTCCTTTGCTTTTAAATTATTCATAATTGATGAAA-AC-CAAAAAAAA 2044
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 85664961005
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5