BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT1G77920.1
Length=1826
Score E
Sequences producing significant alignments: (Bits) Value
Ahg909416 jgi|Araly1|909416|Al_scaffold_0002_2497 1000 0.0
Ahg472441 jgi|Araly1|472441|fgenesh2_kg.1__2395__AT1G22070.1 159 5e-38
> Ahg909416 jgi|Araly1|909416|Al_scaffold_0002_2497
Length=1119
Score = 1000 bits (541), Expect = 0.0
Identities = 640/685 (93%), Gaps = 17/685 (2%)
Strand=Plus/Plus
Query 887 TTAGGACCATCTGGGAGTATTAACACAGGGATTGCATCATTTGAGATGGAATATTCACAC 946
||||||| ||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct 451 TTAGGACTATCTGGGAGTATTAACACAGGGATTGCTTCATTTGAGATGGAATATTCACAC 510
Query 947 TGGCTACAAGAACAAAGCAGAAGAGTTAGCGAACTACGAACAGCGCTTCAATCTCATATA 1006
||||| |||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct 511 TGGCTTCAAGAACAAAGCAGGAGAGTTAGCGAACTACGAACAGCGCTTCAATCTCATATA 570
Query 1007 AGCGACATAGAACTCAAGATGCTAGTAGAGAGTTGCTTGAACCATTACGCTAATCT-TTT 1065
|||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |||
Sbjct 571 AGCGACATAGAACTCAAGATGCTAGTAGAGAGTTGCTTGAACCATTACGCGAATCTGTTT 630
Query 1066 CCAAATGAAATCCGATGCAGCAAAAGCCGATGTTTTCTACTTGATATCGGGAATGTGGCG 1125
| ||||||||| |||||||| ||||| |||||||||||||||||||||||||||||| |
Sbjct 631 -CGAATGAAATCTGATGCAGCGAAAGCAGATGTTTTCTACTTGATATCGGGAATGTGGAG 689
Query 1126 AACTTCAACCGAAAGATTCTTCCAATGGATTGGAGGGTTTCGTCCATCCGAACTTTTAAA 1185
||||||||| ||||| ||||| || ||||||||||| |||||||||||||| ||||||||
Sbjct 690 AACTTCAACTGAAAGGTTCTTTCAGTGGATTGGAGGATTTCGTCCATCCGAGCTTTTAAA 749
Query 1186 CGTTGTGATGCCTTATCTTCAACCATTAACGGATCAACAAATCTTGGAAGTGAGAAACCT 1245
|||||||||||||||||||||||||||||| ||||||||| |||||||||||||||||||
Sbjct 750 CGTTGTGATGCCTTATCTTCAACCATTAACCGATCAACAAGTCTTGGAAGTGAGAAACCT 809
Query 1246 CCAACAATCATCACAACAAGCAGAGGATGCTCTGTCTCAAGGGATTGATAAACTTCAACA 1305
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 810 CCAACAATCATCACAACAAGCAGAGGATGCTCTGTCTCAAGGGATTGATAAACTTCAACA 869
Query 1306 GAGTTTAGCTGAAAGCATTGTGATTGATGCGGTTATCGAGTCCACGCATTATCCCACTCA 1365
|||||||||||||||||||||||||||||||||||||||||| | | || |
Sbjct 870 GAGTTTAGCTGAAAGCATTGTGATTGATGCGGTTATCGAGTC------T---C--AC--A 916
Query 1366 CATGGCTGCAGCTATAGAGAATCTTCAAGCATTAGAAGGATTTGTGAATCAAGCAGATCA 1425
|||||||||| ||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct 917 --TGGCTGCAGCAATAGAGAATCTTCAAGCATTAGAGGGATTTGTGAATCAAGCAGATCA 974
Query 1426 TCTGAGGCAACAAACTTTGCAACAAATGGCGAAGATCTTAACGACAAGACAATCGGCTCG 1485
||||||||||||||||||||||||||||||||||||||| |||||||||||||| |||||
Sbjct 975 TCTGAGGCAACAAACTTTGCAACAAATGGCGAAGATCTTGACGACAAGACAATCAGCTCG 1034
Query 1486 AGGTTTACTAGCTTTAGGAGAGTATCTTCATAGACTTCGTGCTCTTAGTTCTCTTTGGGC 1545
|||| |||| ||||| |||||||||||||| |||||||||||||||||||||||||||||
Sbjct 1035 AGGTCTACTTGCTTTGGGAGAGTATCTTCACAGACTTCGTGCTCTTAGTTCTCTTTGGGC 1094
Query 1546 AGCTCGTCCACAAGAACCAACTTAA 1570
||||||||||| |||||| ||||||
Sbjct 1095 AGCTCGTCCACGAGAACCCACTTAA 1119
Score = 688 bits (372), Expect = 0.0
Identities = 404/419 (96%), Gaps = 3/419 (1%)
Strand=Plus/Plus
Query 464 ATGATGAGTTCTTCTTCTCCAACACAACTTGCATCTTTAAGAGACATGGGAATCTATGAG 523
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1 ATGATGAGTTCTTCTTCTCCAACACAACTTGCATCTTTAAGAGACATGGGAATCTATGAG 60
Query 524 CCATTTCAACAAATTGTCGGTTGGGGAAATGTTTTCAAATCTGATATCAATGATCATAGT 583
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 61 CCATTTCAACAAATTGTCGGTTGGGGAAATGTTTTCAAATCTGATATCAATGATCATAGT 120
Query 584 CCCAATACTGCTACTTCCTCTATTATTCAGGTTGATCCTAGAATTGATGATCACAACAAC 643
|||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct 121 CCCAATACTGCTACTTCCTCGATTATTCAGGTTGATCCTAGAATTGATGATCACAACAAC 180
Query 644 AACATCAAGATAAATTATGATTCTTCTCATAACCAGATCGAAGCAGAACAACCTTCTAGT 703
| ||||||| |||||||||||||| |||||||||| ||||||||||||||| ||||||
Sbjct 181 --C-TCAAGATGAATTATGATTCTTCGCATAACCAGAACGAAGCAGAACAACCATCTAGT 237
Query 704 AATGATAATCAAGATGATGATGGCAGGATTCATGATAAGATGAAACGGCGTTTAGCGCAG 763
|||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct 238 AATGATAATCAAGATGATGATGGCAGGACTCATGATAAGATGAAACGGCGTTTAGCGCAG 297
Query 764 AACCGAGAAGCGGCTCGCAAAAGTCGTTTGAGAAAGAAGGCTTATGTTCAGCAGTTAGAG 823
||||| ||||| |||||||||||||||||||||||||||||||||||||| ||| ||||
Sbjct 298 AACCGTGAAGCTGCTCGCAAAAGTCGTTTGAGAAAGAAGGCTTATGTTCAACAGCTAGAA 357
Query 824 GAAAGCCGGTTAAAGTTATCGCAGTTAGAGCAAGAACTCGAAAAGGTTAAGCAGCAGGG 882
|||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct 358 GAAAGCCGGTTAAAGTTATCGCAGTTAGAGCAAGAACTCGAAAAGGCTAAGCAGCAGGG 416
> Ahg472441 jgi|Araly1|472441|fgenesh2_kg.1__2395__AT1G22070.1
Length=1742
Score = 159 bits (86), Expect = 5e-38
Identities = 143/170 (84%), Gaps = 5/170 (3%)
Strand=Plus/Plus
Query 693 AACCTTCTAGTAATGATAATCAAGATGATGATGGCAGGATTC-ATGATAAGATGAAACGG 751
||||||| |||||| || |||| || || || | ||| || |||||||||||||||||
Sbjct 547 AACCTTCGAGTAATAATGATCACGACGAAGA--AC-GGA-TCAATGATAAGATGAAACGG 602
Query 752 CGTTTAGCGCAGAACCGAGAAGCGGCTCGCAAAAGTCGTTTGAGAAAGAAGGCTTATGTT 811
||||| || |||||| ||||||| ||||||||||||||||||||||||||||| ||||
Sbjct 603 CGTTTGGCTCAGAACAGAGAAGCTGCTCGCAAAAGTCGTTTGAGAAAGAAGGCCCATGTG 662
Query 812 CAGCAGTTAGAGGAAAGCCGGTTAAAGTTATCGCAGTTAGAGCAAGAACT 861
|| |||||||| ||||| ||||||||||| || ||| | ||||| |||||
Sbjct 663 CAACAGTTAGAAGAAAGTCGGTTAAAGTTGTCACAGCTCGAGCAGGAACT 712
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 68562441000
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5