BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT1G77930.1
Length=1172
Score E
Sequences producing significant alignments: (Bits) Value
Ahg476957 jgi|Araly1|476957|fgenesh2_kg.2__2087__AT1G77930.1 1495 0.0
> Ahg476957 jgi|Araly1|476957|fgenesh2_kg.2__2087__AT1G77930.1
Length=1134
Score = 1495 bits (809), Expect = 0.0
Identities = 996/1081 (92%), Gaps = 33/1081 (3%)
Strand=Plus/Plus
Query 105 AAGAGGTGGAATTTGATTTATATGAATTTTGATTTCTGGGTTTACGAAATTGATCGGTTT 164
|||| |||||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct 72 AAGA-GTGGAATTTGATTTATATGAATTTTGATTTCTGGGTTTGCGAAATTGATCGGTTT 130
Query 165 CTGGGTTGGAACTTGAAGTTATGAGCAATCTTCGAGCTATCTGTAGACCATACTCTGTGT 224
|||||| ||| ||||||||||||||||||||||||||||| ||||||||| || |||| |
Sbjct 131 CTGGGTCGGAGCTTGAAGTTATGAGCAATCTTCGAGCTATTTGTAGACCACACACTGTTT 190
Query 225 TCTCTTCGATTGTGTGTTGTAGTAGACATCAAAGTCGATCACTTTTTAGGGTTTCGATTA 284
|||||||| | ||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct 191 TCTCTTCGGTCGTGTGTTGTAGTAGACACCAAAGTCGATCACTTTTTAGGGTTTCGATTA 250
Query 285 AAAACGTCGCCTTTAGAAACCAGAGT-TCGAATTCGTCTTGGTTTAGGTCT-AA-AA-AT 340
||||| ||||||||||||||| |||| |||||||||||||||||||||||| || || ||
Sbjct 251 AAAACCTCGCCTTTAGAAACC-GAGTATCGAATTCGTCTTGGTTTAGGTCTAAAGAAGAT 309
Query 341 TCGAATCTTTGGTTTCGTTTGAATCAGAGGAAGACTCTAGTTAGAGCATCGAATTGGAGC 400
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 310 TCGAATCTTTGGTTTCGTTTGAATCAGAGGAAGACTCTAGTTAGAGCATCGAATTGGAGC 369
Query 401 CAAGAGAAATCTCCTTACGATACTCTCGAGTTGGATAGAAATGCAGAGGAAGAACAGATT 460
||||||||||||| ||||| ||||| ||||||||| || ||||||||||||| ||||||
Sbjct 370 GAAGAGAAATCTCCGTACGAGACTCTTGAGTTGGATCGAGATGCAGAGGAAGAGCAGATT 429
Query 461 AAGGTAGCATACAGAAGATTAGCCAAATTCTATCATCCTGATGTTTATGATGGAAAGGGG 520
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 430 AAGGTAGCATACAGAAGATTAGCCAAATTCTATCATCCTGATGTTTATGATGGAAAGGGG 489
Query 521 ACTCTTGAAGAAGGAGAGACAGCAGAAGCAAGATTCATTAAGATTCAGGCTGCATACGAG 580
|||||||||||||||||||||||||||||||||||||| ||||||||||| |||||||||
Sbjct 490 ACTCTTGAAGAAGGAGAGACAGCAGAAGCAAGATTCATCAAGATTCAGGCGGCATACGAG 549
Query 581 CTGCTCATGGACTCGGAAAAGAAA-GTACAATATGATATGGATAACCGAGTTAATCCGAT 639
|||||||||||||| ||||||||| | |||||||||||||||||||||||| ||||||||
Sbjct 550 CTGCTCATGGACTCAGAAAAGAAAAG-ACAATATGATATGGATAACCGAGTGAATCCGAT 608
Query 640 GAAGGCATCTCAAGCTTGGATGGAATGGTTGATGAAAAAGCGTAAAGCTTTTGATCAAAG 699
|||||||||||||||||||||||||||||||||||||||||| ||||| |||||||| ||
Sbjct 609 GAAGGCATCTCAAGCTTGGATGGAATGGTTGATGAAAAAGCGAAAAGCGTTTGATCAGAG 668
Query 700 GGGCGACATGGCGGTTGCCGCTTGGGCTGAGCAACAACAGCTTGATATAAACCTGCGTGC 759
||||||||||| |||| |||||||||||||||||||||||||| |||||||| |||||
Sbjct 669 AGGCGACATGGCTATTGCAGCTTGGGCTGAGCAACAACAGCTTGAGATAAACCTTCGTGC 728
Query 760 TCGTCGTCTTTCTCGTTCTAAAGTGGATCCGGAAGAAGAAAGGAAGATATTGGAGAAGGA 819
|||||| ||||| |||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct 729 TCGTCGCCTTTCACGTTCTAAGGTGGATCCGGAAGAAGAAAGGAAGATATTGGAGAAGGA 788
Query 820 GAAGAAAGCATCGAGAGAGTTATTCAACAGCACTTTAAAGCGACACACGCTAGTGTTGAA 879
|||||||||||| ||||||||||| ||||||||||||||| ||||||| |||||||||||
Sbjct 789 GAAGAAAGCATCAAGAGAGTTATTTAACAGCACTTTAAAGAGACACACACTAGTGTTGAA 848
Query 880 GAAAAGAGATCTGATGCGAAAGAAAGCAGAGGAAGATAAGAAAAAGCTCATCACTCAGCT 939
|||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 849 GAAAAGAGATCTAATGCGAAAGAAAGCAGAGGAAGATAAGAAAAAGCTCATCACTCAGCT 908
Query 940 ATTAGCAGCAGAAGGTCTCGAGCTTGATACCGAAGCAGAAGAGGAAGAAGCAGCAAAGTA 999
|||||||||||||||||||||||||||| | |||| |||||||||||||||||| |||||
Sbjct 909 ATTAGCAGCAGAAGGTCTCGAGCTTGATTCTGAAGAAGAAGAGGAAGAAGCAGCCAAGTA 968
Query 1000 AGATTCCAAACATTTTGGAAGC-T--TCT---ATAGCTACTTCAAGTAATTAAGCACATG 1053
||| |||||| |||||||||| | ||| ||| ||||||||||||||||||||| ||
Sbjct 969 AGAGCCCAAACGTTTTGGAAGCGTCATCTTCGATATCTACTTCAAGTAATTAAGCACTTG 1028
Query 1054 GTACTTGCTCCCTCTCTGTCTCT--CT-T-GTAGTATAAACATACATGTAGATAATCATA 1109
|||||| |||||||||| ||||| || | |||||||||||||||||||| | | | ||
Sbjct 1029 GTACTTACTCCCTCTCTCTCTCTTTCTCTTGTAGTATAAACATACATGTA-A-A-T-AT- 1083
Query 1110 TTTGACAATTTACAAGATCTTCACTGCACGGTTCATTATTAAAAATAAGACAAGTACCAA 1169
| || || |||||||||| |||||||||| |||||||||||||||||||||||
Sbjct 1084 T---AC------CA-GATCTTCACTTCACGGTTCATCATTAAAAATAAGACAAGTACCAA 1133
Query 1170 T 1170
|
Sbjct 1134 T 1134
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 43726985799
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5