BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT1G77940.1
Length=652
Score E
Sequences producing significant alignments: (Bits) Value
Ahg476958 jgi|Araly1|476958|fgenesh2_kg.2__2088__AT1G77940.1 833 0.0
Ahg942719 jgi|Araly1|942719|scaffold_603263.1 126 2e-28
> Ahg476958 jgi|Araly1|476958|fgenesh2_kg.2__2088__AT1G77940.1
Length=625
Score = 833 bits (451), Expect = 0.0
Identities = 556/605 (92%), Gaps = 13/605 (2%)
Strand=Plus/Plus
Query 1 CGAAGCGGCGCTTTTTCGGTTT-GGTCATCGTGCTCCTCTTCTCCTCCACCGCACAGATC 59
|||||||||||||||||| ||| ||||||||||||||||||||||||| |||||||||||
Sbjct 1 CGAAGCGGCGCTTTTTCGTTTTAGGTCATCGTGCTCCTCTTCTCCTCCGCCGCACAGATC 60
Query 60 CAAGACATTTTGATTACACTCCATCGCCGGCGAAAATGGTGACGGAAAAGAAAACGAAGA 119
||||||||||||| | |||| |||||||||||||||||||||||| |||||||||||||
Sbjct 61 CAAGACATTTTGACTCCACTTCATCGCCGGCGAAAATGGTGACGGCCAAGAAAACGAAGA 120
Query 120 AGTCTCATGAGGGTATCAACAGTAGGTTGGCTCTTGTTATGAAGAGTGGTAAATACACTC 179
||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct 121 AGTCTCATGAGGGTATCAACAGTAGGTTGGCTCTTGTAATGAAGAGTGGTAAATACACTC 180
Query 180 TTGGTTACAAGTCTGTTCTCAAATCCCTCCGTGGCTCCAAAGGGAAACTGATTCTAATCT 239
|||||||||||||||||||||||||||| ||||||||||||||||| |||||||||||||
Sbjct 181 TTGGTTACAAGTCTGTTCTCAAATCCCTTCGTGGCTCCAAAGGGAAGCTGATTCTAATCT 240
Query 240 CCACCAATTGCCCACCGTTGAGAAGATCAGAGATTGAGTACTACGCAATGCTCGCTAAAG 299
|||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct 241 CCACCAATTGCCCACCCTTGAGAAGATCAGAGATTGAGTACTACGCAATGCTCGCTAAAG 300
Query 300 TTGGTGTCCACCATTACAATGGAAATAACGTTGATTTGGGAACAGCTTGCGGAAAGTACT 359
|||||||||||||||| |||||||||||||||||||||||||||||||| || |||||||
Sbjct 301 TTGGTGTCCACCATTATAATGGAAATAACGTTGATTTGGGAACAGCTTGTGGGAAGTACT 360
Query 360 TCCGTGTTTCTTGTCTGAGCATTGTTGATCCTGGTGATTCTGACATTATCAAGTCAATTC 419
|||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct 361 TCCGTGTTTCGTGTCTGAGCATTGTTGATCCTGGTGATTCTGACATTATCAAGTCAATCC 420
Query 420 CTGGTGACCAGTGATACAATTTTCAGATTTTATTT-TTCCCAGACTTTTTACCCGTCTTT 478
|||| || ||||||| ||||||||||||||| ||| ||||| ||||| | | || | |||
Sbjct 421 CTGGCGATCAGTGATTCAATTTTCAGATTTTCTTTCTTCCCGGACTTCT-ATCCATTTTT 479
Query 479 GTATTCGAGTCTCTCAAAATTTTATGAGCAATAGACATTGTGTTTCTTCTTTGTCAAGTT 538
||||| ||| ||||| ||||||||||||||||||||| ||||||||||||| ||||| ||
Sbjct 480 GTATTTGAGCCTCTCTAAATTTTATGAGCAATAGACAATGTGTTTCTTCTTGGTCAAATT 539
Query 539 TTCTTATATTGAGGACCGGAAAAGAAATTTCTTTAAAAGCAGCTTACAACACAAGTTTAC 598
||||||||| | | | ||| ||| || || ||||||| || ||||| |||||||||
Sbjct 540 TTCTTATAT-G-G-A----AAA-GAA-TT-CTATAAAAGCTGCAAACAACTCAAGTTTAC 589
Query 599 GCATT 603
|||||
Sbjct 590 GCATT 594
> Ahg942719 jgi|Araly1|942719|scaffold_603263.1
Length=309
Score = 126 bits (68), Expect = 2e-28
Identities = 77/81 (95%), Gaps = 1/81 (1%)
Strand=Plus/Plus
Query 235 AATCTCCACCAATTGCCCACCGTTGAGAAGATCAGAGATTGAGTACTACGCAATGCTCGC 294
|||||||| |||||||||||| ||||||||||||||||||||||||||||||||||| ||
Sbjct 47 AATCTCCA-CAATTGCCCACCATTGAGAAGATCAGAGATTGAGTACTACGCAATGCTTGC 105
Query 295 TAAAGTTGGTGTCCACCATTA 315
|||||||||||| ||||||||
Sbjct 106 TAAAGTTGGTGTTCACCATTA 126
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 23903068959
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5