BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT1G77950.1
Length=1027
Score E
Sequences producing significant alignments: (Bits) Value
Ahg476959 jgi|Araly1|476959|fgenesh2_kg.2__2089__AT1G77950.1 1201 0.0
Ahg477299 jgi|Araly1|477299|fgenesh2_kg.2__2429__AT1G77950.2 1173 0.0
> Ahg476959 jgi|Araly1|476959|fgenesh2_kg.2__2089__AT1G77950.1
Length=848
Score = 1201 bits (650), Expect = 0.0
Identities = 763/818 (93%), Gaps = 5/818 (1%)
Strand=Plus/Plus
Query 30 AATAATAGATTGTGTTTTGATTATTTTGCAGTGACCATCGGATATGGGTCGGGTTAAATT 89
||||||||| || |||||||||| ||||||| || ||| ||| ||||||||||| |||||
Sbjct 1 AATAATAGAGTGCGTTTTGATTA-TTTGCAGCGATCATTGGACATGGGTCGGGTGAAATT 59
Query 90 GGAGTTAAAGCGTATAGAGAAGAGCACGAACCGACAAATTACGTTCTCAAAACGTAAAAA 149
|||||||||||| |||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct 60 GGAGTTAAAGCGGATAGAGAAGAACACGAACCGACAAATTACGTTCTCAAAACGTAAAAA 119
Query 150 AGGTTTAATAAAAAAGGCTTATGAATTGTCAACACTTTGTGACATCGATCTTGCCCTCCT 209
||||||||||||||| || ||||||||||||||||||||||| |||||||||||||||||
Sbjct 120 AGGTTTAATAAAAAAAGCGTATGAATTGTCAACACTTTGTGATATCGATCTTGCCCTCCT 179
Query 210 CATGTTCTCTCCCTCTGATCGACTATGTCTCTTTTCCGGTCAAACAAGGATCGAGGACGT 269
|||||||||||| || ||||||||||||||||||||||||||||||||||||||||||||
Sbjct 180 CATGTTCTCTCCTTCCGATCGACTATGTCTCTTTTCCGGTCAAACAAGGATCGAGGACGT 239
Query 270 TTTGGCGAGGTACATCAATCTTCCTGATCAAGAAAGAGAAAACGCCATAGTTTTCCCTGA 329
|||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct 240 TTTGGCGAGGTACATCAATCTTCCTGATCAAGAAAGAGAAAACGCCATAGTTTTTCCTGA 299
Query 330 TCAGAGCAAGCGCCAAGGTATCCAAAACAAAGAGTATTTGTTAAGGACTTTGGAAAAACT 389
||||||||| ||||||| ||||||||||||||||||||||||||| ||| ||||||||||
Sbjct 300 TCAGAGCAAACGCCAAGCTATCCAAAACAAAGAGTATTTGTTAAGAACTCTGGAAAAACT 359
Query 390 CAAAATTGAGGATGACATGGCTCTCCAAATCAACGAACCTCGTCCAGAAGCCACCAACT- 448
||||||||| |||||||||||||||||||||||||||||||| || ||||| | ||| |
Sbjct 360 CAAAATTGAAGATGACATGGCTCTCCAAATCAACGAACCTCGCCCTGAAGCTATCAA-TA 418
Query 449 CCAATGTCGAGGAACTTGAGCAAGAAGTTTGTAGATTACAACAACAGCTTCAGATATCAG 508
|| |||||||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct 419 CCGATGTCGAGGAACTTGAGCAAGAAGTTTGTAGATTACAACAGCAGCTTCAGATATCAG 478
Query 509 AGGAAGAACTCAGGAAATTCGAACCAGATCCAATGAGGCTAACATCAATGGAGGAGATTG 568
|||||||||| ||||||||||||||||||||||||||| | |||||||||||||||||||
Sbjct 479 AGGAAGAACTAAGGAAATTCGAACCAGATCCAATGAGGTTTACATCAATGGAGGAGATTG 538
Query 569 AAGCATGTGAAGCTAACCTCATCAATACGTTGACACGTGTCGTCCAGAGAAGGGAACATT 628
||||||||||| || | ||||||||||| |||||| ||||||| ||||||||||||||||
Sbjct 539 AAGCATGTGAAACTCATCTCATCAATACATTGACAAGTGTCGTACAGAGAAGGGAACATT 598
Query 629 TGTTGAGAAAGTCCTGCGAAGCACAAAGTAACCAACAAAGCATGGACGGGATCCTTCTAA 688
||||||| |||||||||||||||| ||||||||||||||||||| | |||||||||||||
Sbjct 599 TGTTGAGGAAGTCCTGCGAAGCACCAAGTAACCAACAAAGCATGCAGGGGATCCTTCTAA 658
Query 689 ATGACATCGTCGAGGATTGGGGACCTGAGCCCGAGCCCAAACAAGCCCATATGATAGCTA 748
|||||||||||||||||||||| ||||| | |||||||||||||||||| |||| ||||
Sbjct 659 ATGACATCGTCGAGGATTGGGGGTCTGAGGCTGAGCCCAAACAAGCCCATGTGATGGCTA 718
Query 749 ATTCGGCCCATCATTCAAATCAGCCAAGCTATGATTTACTCTTACGCAGG-AGTAATTCG 807
| ||||||||||| |||||||||| |||||||||||| ||||||| ||| |||||||||
Sbjct 719 AGTCGGCCCATCAGTCAAATCAGCTAAGCTATGATTTGCTCTTACA-AGGGAGTAATTCG 777
Query 808 AGTTCGAACCAAAATCCAAAATGATATTAGGTGAATCG 845
||||||||||||||||||||||||||||||||||||||
Sbjct 778 AGTTCGAACCAAAATCCAAAATGATATTAGGTGAATCG 815
> Ahg477299 jgi|Araly1|477299|fgenesh2_kg.2__2429__AT1G77950.2
Length=773
Score = 1173 bits (635), Expect = 0.0
Identities = 728/774 (94%), Gaps = 2/774 (0%)
Strand=Plus/Plus
Query 73 ATGGGTCGGGTTAAATTGGAGTTAAAGCGTATAGAGAAGAGCACGAACCGACAAATTACG 132
||||||||||| ||||||||||||||||| |||||||||| |||||||||||||||||||
Sbjct 1 ATGGGTCGGGTGAAATTGGAGTTAAAGCGGATAGAGAAGAACACGAACCGACAAATTACG 60
Query 133 TTCTCAAAACGTAAAAAAGGTTTAATAAAAAAGGCTTATGAATTGTCAACACTTTGTGAC 192
|||||||||||||||||||||||||||||||| || |||||||||||||||||||||||
Sbjct 61 TTCTCAAAACGTAAAAAAGGTTTAATAAAAAAAGCGTATGAATTGTCAACACTTTGTGAT 120
Query 193 ATCGATCTTGCCCTCCTCATGTTCTCTCCCTCTGATCGACTATGTCTCTTTTCCGGTCAA 252
||||||||||||||||||||||||||||| || |||||||||||||||||||||||||||
Sbjct 121 ATCGATCTTGCCCTCCTCATGTTCTCTCCTTCCGATCGACTATGTCTCTTTTCCGGTCAA 180
Query 253 ACAAGGATCGAGGACGTTTTGGCGAGGTACATCAATCTTCCTGATCAAGAAAGAGAAAAC 312
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 181 ACAAGGATCGAGGACGTTTTGGCGAGGTACATCAATCTTCCTGATCAAGAAAGAGAAAAC 240
Query 313 GCCATAGTTTTCCCTGATCAGAGCAAGCGCCAAGGTATCCAAAACAAAGAGTATTTGTTA 372
||||||||||| |||||||||||||| ||||||| |||||||||||||||||||||||||
Sbjct 241 GCCATAGTTTTTCCTGATCAGAGCAAACGCCAAGCTATCCAAAACAAAGAGTATTTGTTA 300
Query 373 AGGACTTTGGAAAAACTCAAAATTGAGGATGACATGGCTCTCCAAATCAACGAACCTCGT 432
|| ||| ||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct 301 AGAACTCTGGAAAAACTCAAAATTGAAGATGACATGGCTCTCCAAATCAACGAACCTCGC 360
Query 433 CCAGAAGCCACCAACTCCAATGTCGAGGAACTTGAGCAAGAAGTTTGTAGATTACAACAA 492
|| ||||| | |||| || ||||||||||||||||||||||||||||||||||||||||
Sbjct 361 CCTGAAGCTATCAACACCGATGTCGAGGAACTTGAGCAAGAAGTTTGTAGATTACAACAG 420
Query 493 CAGCTTCAGATATCAGAGGAAGAACTCAGGAAATTCGAACCAGATCCAATGAGGCTAACA 552
|||||||||||||||||||||||||| ||||||||||||||||||||||||||| | |||
Sbjct 421 CAGCTTCAGATATCAGAGGAAGAACTAAGGAAATTCGAACCAGATCCAATGAGGTTTACA 480
Query 553 TCAATGGAGGAGATTGAAGCATGTGAAGCTAACCTCATCAATACGTTGACACGTGTCGTC 612
||||||||||||||||||||||||||| || | ||||||||||| |||||| |||||||
Sbjct 481 TCAATGGAGGAGATTGAAGCATGTGAAACTCATCTCATCAATACATTGACAAGTGTCGTA 540
Query 613 CAGAGAAGGGAACATTTGTTGAGAAAGTCCTGCGAAGCACAAAGTAACCAACAAAGCATG 672
||||||||||||||||||||||| |||||||||||||||| |||||||||||||||||||
Sbjct 541 CAGAGAAGGGAACATTTGTTGAGGAAGTCCTGCGAAGCACCAAGTAACCAACAAAGCATG 600
Query 673 GACGGGATCCTTCTAAATGACATCGTCGAGGATTGGGGACCTGAGCCCGAGCCCAAACAA 732
| ||||||||||||||||||||||||||||||||||| |||||| | ||||||||||||
Sbjct 601 CAGGGGATCCTTCTAAATGACATCGTCGAGGATTGGGGGCCTGAGGCTGAGCCCAAACAA 660
Query 733 GCCCATATGATAGCTAATTCGGCCCATCATTCAAATCAGCCAAGCTATGATTTACTCTTA 792
|||||| | || ||||||||||||||||| |||||||||| |||||||||||| ||||||
Sbjct 661 GCCCATGTCATGGCTAATTCGGCCCATCAGTCAAATCAGCTAAGCTATGATTTGCTCTTA 720
Query 793 CGCAGG-AGTAATTCGAGTTCGAACCAAAATCCAAAATGATATTAGGTGAATCG 845
| ||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 721 CA-AGGGAGTAATTCGAGTTCGAACCAAAATCCAAAATGATATTAGGTGAATCG 773
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 38199162834
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5