BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT1G77960.1
Length=1673
Score E
Sequences producing significant alignments: (Bits) Value
Ahg316706 jgi|Araly1|316706|fgenesh1_pm.C_scaffold_2001739 1024 0.0
> Ahg316706 jgi|Araly1|316706|fgenesh1_pm.C_scaffold_2001739
Length=1242
Score = 1024 bits (554), Expect = 0.0
Identities = 822/943 (87%), Gaps = 51/943 (5%)
Strand=Plus/Plus
Query 443 catcaacaccaacaccaataccagaaccagcacca-acaccaataccagaaccagcacca 501
||||||||||| |||||| | || ||| ||||| | |||| |||||| ||||||||||
Sbjct 259 CATCAACACCAGCACCAACAACATCTCCAACACCAGA-ACCAGTACCAGCACCAGCACCA 317
Query 502 gcacc-GTGTTGTacaacaacaacaacaacaacaacTAATCAATTCGCATGAGACGTGGT 560
||||| | || || ||| ||||||| ||| ||| ||| ||||||||||||||||||||
Sbjct 318 GCACCAG-GTCGT---ACAGCAACAACGACATCAATTAAGCAATTCGCATGAGACGTGGT 373
Query 561 TACAGGATAAGTTATCAAACATGTTGAATACTATTCAGCAGGAGTCGAGTGTTTTTACAA 620
|||||||||| |||||||||||||||||||||||| |||||||||||||||||||||
Sbjct 374 TACAGGATAATTTATCAAACATGTTGAATACTATT---CAGGAGTCGAGTGTTTTTACAG 430
Query 621 GGAACCAAACAGAGATTGGTCAACAAGTGAGGCAAGCAAATAATGGATTTGCACATCCAA 680
|||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct 431 GGAACCAAACAGAGATTGGTCAACAAGTGAGGCAAGAAAATAATGGATTTGCACATCCAA 490
Query 681 CTGTGACGAATTCTCCACTTCAACTTCAAAACCGTTTTCTTCCAGTACCTTTGATACCTC 740
||||||| ||||||||| ||||||||||||||||||||||||||||||||||||| ||||
Sbjct 491 CTGTGACTAATTCTCCAATTCAACTTCAAAACCGTTTTCTTCCAGTACCTTTGATCCCTC 550
Query 741 AACACCGTTCTAATGCATTTGGATCACTTTTTCCTCAAACTA-TGGGATCCG--CTAGGC 797
|| ||||||||||||||||||||||||||||||||| ||| | | || | |||
Sbjct 551 AAGGCCGTTCTAATGCATTTGGATCACTTTTTCCTCATGCTAATTC-A-CCAAAC-AGGT 607
Query 798 CACAGAACTATATGCCATATCAGACGCCTCATCAACAAGTCAG-TTCTTCCTTTGGCATG 856
| || |||||||||||||||||||||||||||||||| ||| | |||||| |||||||||
Sbjct 608 CGCAAAACTATATGCCATATCAGACGCCTCATCAACATGTC-GCTTCTTCTTTTGGCATG 666
Query 857 TATCCACAGCAACCGCGCCCACCAGTGTTTGTCC-GTAGGCAAAATGAACCTCCCAATAT 915
||||| || ||||||| ||||||||| |||| || |||||||||||| |||||||||| |
Sbjct 667 TATCCTCACCAACCGCCCCCACCAGTTTTTG-CCAGTAGGCAAAATGTACCTCCCAATTT 725
Query 916 AAGGATGGTTAACAATA-ATGCTCTGACCAGGATACATCCGTTACAAAATCAAACAAATA 974
|||||||||||||||| | ||| ||| |||| |||||| ||||| |||||||||||||
Sbjct 726 AAGGATGGTTAACAATTTA-GCTATGATGAGGACACATCCTTTACACAATCAAACAAATA 784
Query 975 TGATCCCTCCCTTTAATGCTGTTCCCCAACGTA-C---C-AT--ACC---CC--GACCTC 1022
|||||||| |||||||||||||||||||||||| | | || ||| || ||||||
Sbjct 785 TGATCCCTACCTTTAATGCTGTTCCCCAACGTAACATTCCATCCACCATACCCAGACCTC 844
Query 1023 AAATGTCTTCTAGATTATTTACCAGGCAACATGGCGGTATGCAAACATCGGTGAATCAGT 1082
|||||||||| ||||| | | | |||||||||||||||||||||||||| ||||||||||
Sbjct 845 AAATGTCTTCGAGATT-TAT-C-AGGCAACATGGCGGTATGCAAACATCCGTGAATCAGT 901
Query 1083 CTCCATTGAGGTTTAGGTTACCCAACATTAACAATCGTCAGGCCCCTGTACGTCCAAACG 1142
|||||| |||||||||||||||||||||||||||||||||| ||| ||||||||||||
Sbjct 902 CTCCATGGAGGTTTAGGTTACCCAACATTAACAATCGTCAGATGCCTATACGTCCAAACG 961
Query 1143 CAAACGCAATCATACCCCCACAGGGTGAAATTTTAGGATGTCGACGAAGAAGTTACCCAA 1202
|||||||||||||||| |||||||||||||||||||||||||||||| ||||||||||||
Sbjct 962 CAAACGCAATCATACCTCCACAGGGTGAAATTTTAGGATGTCGACGATGAAGTTACCCAA 1021
Query 1203 GTCGATTTGAATTTGGACAATCATCATCATCTTCGGCTCAACGAAGGAGAATTGTACCAG 1262
||| |||||||||||||||||||||||||||||||||||||| ||||||||||| |||
Sbjct 1022 CTCGGTTTGAATTTGGACAATCATCATCATCTTCGGCTCAACGCAGGAGAATTGTGTCAG 1081
Query 1263 CAAG-CGAAAATGTTGGCTCAACTTCAATCAATCATGGAAATGCTGAACA-AAGGGGCAC 1320
||| |||||| ||||||||||| |||||||||| ||||| | |||| |||
Sbjct 1082 -AAGGCGAAAACCTTGGCTCAACTGGAATCAATCATC------CTGAA-AGAAGG--CAC 1131
Query 1321 --AAATACTATATACGATCCAAGATACGAAAGCTTCGGTTTAT 1361
||||| ||||||| ||||||||||||||||| |||||||||
Sbjct 1132 GTAAATAATATATACAATCCAAGATACGAAAGCCTCGGTTTAT 1174
Score = 326 bits (176), Expect = 4e-88
Identities = 274/321 (85%), Gaps = 8/321 (2%)
Strand=Plus/Plus
Query 143 TCTGGCGATATGTTCGATGACCAATCGCCGTTGTTGAGTCCTTTATGTTTTCTTGAATCA 202
||||||||||||| ||||||| |||| || |||||||||||||||||||||||||||||
Sbjct 7 TCTGGCGATATGTGCGATGACGAATCTTCGCTGTTGAGTCCTTTATGTTTTCTTGAATCA 66
Query 203 CCGGAACCGTGTATTCCGTTATTGGATTGCCTGCCGAATTCAACAGTAGAAACCGAAAAA 262
|||||||||| |||||||||||||||||| ||||||||| | ||||| |||||||||||
Sbjct 67 CCGGAACCGTATATTCCGTTATTGGATTGTCTGCCGAATCCGACAGTGGAAACCGAAAAT 126
Query 263 CCGTATGTTGACCCTTTTGGATTGGTACCCG-TCTCTACAATAGACGAAACTAACCT-CT 320
||||| |||||||||||| || | ||| | ||||||| ||||||||||||| | ||
Sbjct 127 TCGTATAACGACCCTTTTGGACTGAT-CCCTATATCTACAAGAGACGAAACTAAC-TGCT 184
Query 321 TGTTATCCTCTCAACAATCAAATCTAGTCACATATCAAGAGACATCAACTCTGGTACCAA 380
| |||||||||||||||||||||||| ||||||||||||||||||||||||| |||||||
Sbjct 185 TATTATCCTCTCAACAATCAAATCTAATCACATATCAAGAGACATCAACTCTAGTACCAA 244
Query 381 AACCACTTGAAATGCACCAGA-ATCAGaaccag-aaccagcaccaacatcaaaaccaaaa 438
| |||||||||||||| || | | ||| |||| ||| | | |||||| || ||||| |
Sbjct 245 ATCCACTTGAAATGCATCA-ACACCAGCACCAACAAC-ATCTCCAACACCAGAACCAGTA 302
Query 439 tcaacatcaacaccaacacca 459
|| || || ||||| |||||
Sbjct 303 CCAGCACCAGCACCAGCACCA 323
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 62734633515
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5