BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT1G77980.1
Length=1370
Score E
Sequences producing significant alignments: (Bits) Value
Ahg476961 jgi|Araly1|476961|fgenesh2_kg.2__2091__AT1G77980.1 1733 0.0
Ahg912066 jgi|Araly1|912066|Al_scaffold_0001_2320 599 2e-170
> Ahg476961 jgi|Araly1|476961|fgenesh2_kg.2__2091__AT1G77980.1
Length=1293
Score = 1733 bits (938), Expect = 0.0
Identities = 1223/1349 (91%), Gaps = 65/1349 (5%)
Strand=Plus/Plus
Query 1 ATGGGTCGAGTGAAATTGGAGATAAAACGAATAGAAAACACAACGAATCGACAAGTTACA 60
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1 ATGGGTCGAGTGAAATTGGAGATAAAACGAATAGAAAACACAACGAATCGACAAGTTACG 60
Query 61 TTCTCCAAAAGACGAAATGGTCTTATAAAGAAAGCTTATGAATTGTCCATTCTTTGTGAC 120
||||| |||||||| |||||||| ||||||||||||||||||||||||||||||||||||
Sbjct 61 TTCTCAAAAAGACGTAATGGTCTGATAAAGAAAGCTTATGAATTGTCCATTCTTTGTGAC 120
Query 121 ATCGACATTGCTCTCCTCATGTTCTCTCCCTCTGATCGCCTTAGCCTCTTTTCGGGCAAA 180
|||||||||||||||||||||||||||||||| |||||||||||||| ||||| ||||||
Sbjct 121 ATCGACATTGCTCTCCTCATGTTCTCTCCCTCCGATCGCCTTAGCCTTTTTTCCGGCAAA 180
Query 181 ACAAGGATTGAAGACGTTTTCTCTAGATACATCAATCTTTCTGATCAAGAACGAGAGAAT 240
|||||||| |||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct 181 ACAAGGATCGAAGACGTTTTCTCAAGATACATCAATCTTTCTGATCAAGAACGAGAGAAT 240
Query 241 GCTCTAGTATTCCCCGATCAAAGTCGACGCCCAGATTTCCAGAGCAAAGAGTATCTACTC 300
||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct 241 GCTCTAGTATTCCCCGATCAAAGCCGACGCCCAGATTTCCAGAGCAAAGAGTATCTACTC 300
Query 301 CGGACTTTGCAGCAACTCAAGGCTGAGAATGATATTGCTCTTCAACTTACCAACCCTACA 360
||||||||||||||||||||| |||||||||||||||||||||||||||| |||||||||
Sbjct 301 CGGACTTTGCAGCAACTCAAGACTGAGAATGATATTGCTCTTCAACTTACAAACCCTACA 360
Query 361 GCTATCAACTCCGACGTCGAGGAACTTGAGCATGAAGTTTATAAGTTACAACAACAACTT 420
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct 361 GCTATCAACTCCGACGTCGAGGAACTTGAGCATGAAGTTTATAAGTTACAACAACAGCTT 420
Query 421 CTCATGGCAGAGGAAGAACTAAGGAAATACGAACCAGATCCAATCAGGTTTACAACAATG 480
| ||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct 421 CACATGGCAGAGGAAGAACTAAGAAAATACGAACCAGATCCAATCAGGTTTACAACAATG 480
Query 481 GAAGAGTACGAAACTTGTGAGAAGCAGCTCATGGACACCTTAACACGTGTCAATCAACGA 540
||||||||||||||||||||||||||||| ||||| ||||||||||||||||||||||||
Sbjct 481 GAAGAGTACGAAACTTGTGAGAAGCAGCTAATGGATACCTTAACACGTGTCAATCAACGA 540
Query 541 CGGGAACATATATTGAGTCAAGACCAATTATCTTCATATGAAGCATCTGCTTTACAACAA 600
||||||||||| |||||||| || || ||||||||||| |||||||||||| ||||||||
Sbjct 541 CGGGAACATATGTTGAGTCATGATCACTTATCTTCATACGAAGCATCTGCTATACAACAA 600
Query 601 CAGCAAAGCATGGGTGGGCCTTTTGGAAACGACGTCGTTGGAGGATGGCTGACTGAAAAT 660
||||||| ||||||||| ||||||| ||||||||||||||| ||||||||||||||||||
Sbjct 601 CAGCAAAACATGGGTGGACCTTTTGTAAACGACGTCGTTGGGGGATGGCTGACTGAAAAT 660
Query 661 GGGCCTAACGAAGCCCATTTATTCGACGCATCGGCACATTCAGCAATGTATGAAACTTTA 720
||||||||| |||||||||||||||||||||| || |||||||||||||||||||| ||
Sbjct 661 GGGCCTAACCAAGCCCATTTATTCGACGCATCAGCCCATTCAGCAATGTATGAAACGTTG 720
Query 721 TTGCAAGGAAGTAGCTCAAGCTCGAACCAAAACAACATTATGGGTGAATCCAATGTGTCA 780
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 721 TTGCAAGGAAGTAGCTCAAGCTCGAACCAAAACAACATTATGGGTGAATCCAATGTGTCA 780
Query 781 AATCATAACGGTGACATGTTTCAAGAATGGGCCCAAGCCTATAATTCTACTACGGCCCAT 840
|||||||||||||||||||| |||||||||||||| || |||||||||||||||||||||
Sbjct 781 AATCATAACGGTGACATGTTCCAAGAATGGGCCCAGGCATATAATTCTACTACGGCCCAT 840
Query 841 AACCCTTCGACTCTATTTCCTCCTATGCAGCATCAGCATGGACTGGTGGTTGATCCCAAT 900
|| || | || |||||||||||||||||||||||||| ||| | ||||||||||||||
Sbjct 841 AATCCGACAACCCTATTTCCTCCTATGCAGCATCAGCACGGA-T--TGGTTGATCCCAAT 897
Query 901 ATAGAAGAAATTGAAATACCGGTTATGAAGAAGGATGCACAAGCAGACCACGAGGTCTCC 960
|| |||||||||||||| ||||||||||||||||| |||||||||||||| |||||||||
Sbjct 898 ATGGAAGAAATTGAAATCCCGGTTATGAAGAAGGAGGCACAAGCAGACCAGGAGGTCTCC 957
Query 961 GACTATGATATAAGAATGCCTCAGCTCAGTAGCCAATAATCTCAAGGAATTTCAATTTTA 1020
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 958 GACTATGATATAAGAATGCCTCAGCTCAGTAGCCAATAATCTCAAGGAATTTCAATTTTA 1017
Query 1021 CCATATATTATTGACATAATTTATACGttttttcttttattttttAGAAAAGTTAACAat 1080
|| | ||| || | | |||||||||||||||| | | | | | |
Sbjct 1018 CC-T-TATCATA-A-A-AATTTATACGTTTTTT-----AC-----A-A----T-A----T 1052
Query 1081 atatatacggttttatttatctatgaagacaagatattactatatatatgtttatataAA 1140
| ||||||||||||||||| ||||| | | |||||||||||| || | | |||||||
Sbjct 1053 -T-TATACGGTTTTATTTATTTATGAT-A-A-GATATTACTATACAT-T-T--ATATAAA 1103
Query 1141 ACACAACTTCCACACTTAAGAG--TTAAGACCTTAACCTTTTATTGACTTGTATATTGTA 1198
|||||| |||||| |||||| | |||| ||||||||||||||||||| ||||||||
Sbjct 1104 ACACAATTTCCACCCTTAAG-GCCTTAA----TTAACCTTTTATTGACTTGCATATTGTA 1158
Query 1199 CATAACGTTTCTATTATaaaaaaaa-C-ATTTT-ACTGTTAAACAATGtatatactatat 1255
|||||||||||||||| |||||||| | ||||| ||| ||||||||||||||| | |||
Sbjct 1159 CATAACGTTTCTATTAAAAAAAAAAACCATTTTTACTCTTAAACAATGTATATT-T-TAT 1216
Query 1256 attatgtata-taAA-ACATGAAAAAC-ATGTTTTGCTCTCAAATATGCATATGATTATG 1312
||||| | | |||| | ||| ||||| ||||||||||||||| | || | || |
Sbjct 1217 -TTATGAAAAATAAATAAATGGAAAACCATGTTTTGCTCTCAA----G-AT-T-AT---G 1265
Query 1313 TCAATTTTGCTTGTCT-AAtttttttAAA 1340
|||||||||||||||| |||||||| |||
Sbjct 1266 TCAATTTTGCTTGTCTTAATTTTTT-AAA 1293
> Ahg912066 jgi|Araly1|912066|Al_scaffold_0001_2320
Length=1008
Score = 599 bits (324), Expect = 2e-170
Identities = 591/715 (83%), Gaps = 37/715 (5%)
Strand=Plus/Plus
Query 1 ATGGGTCGAGTGAAATTGGAGAT-AAAACGAATAGAAAACACAACGAATCGACAAGTTAC 59
|||||||| ||||| || ||||| || | ||||||| || ||||||||||||||||||||
Sbjct 1 ATGGGTCGGGTGAAGTTAGAGATCAAGA-GAATAGAGAATACAACGAATCGACAAGTTAC 59
Query 60 ATTCTCCAAAA-G-ACGAAATGGTCTT-ATAAAGAAAGCTTATGAATTGTCCATTCTTTG 116
|| | ||||| | | |||||||| || || |||||||||||||||||||| ||||||||
Sbjct 60 GTT-TTCAAAACGTA-GAAATGGT-TTGATTAAGAAAGCTTATGAATTGTCGATTCTTTG 116
Query 117 TGACATCGACATTGCTCTCCTCATGTTCTCTCCCTCTGATCGCCTTAGCCTCTTTTCGGG 176
||| ||||||||||||||| | ||||||||||| |||||||||||||||||||| || ||
Sbjct 117 TGATATCGACATTGCTCTCATTATGTTCTCTCCTTCTGATCGCCTTAGCCTCTTCTCCGG 176
Query 177 CAAAACAAGGATTGAAGACGTTTTCT-CTAGATACATCAATCTTTCTGATCAAGAACGAG 235
||||| ||||||||||||||||| | | |||| |||||||||| || | ||||||||||
Sbjct 177 AAAAACTAGGATTGAAGACGTTTT-TACAAGATTCATCAATCTTCCTAAACAAGAACGAG 235
Query 236 AGAATGCTCTAGTA-TTCCCCGATCA-AAGTCGACGCCCAGAT-TTCCAGAGCAAAGAGT 292
||| ||||||| || || |||| || || | ||||||||||| || || | ||||||||
Sbjct 236 AGAGTGCTCTA-TACTTTTCCGACCAGAA-TAGACGCCCAGATATT-CAAAACAAAGAGT 292
Query 293 ATCTACTCCGGACTTTGCAGCAACTCAAGGCTGAGAATGATATTGCTCTTCAACTTACCA 352
|||||| ||| |||||||||||||||| |||| ||||| || ||||||||||| || |
Sbjct 293 GTCTACTAAGGATTTTGCAGCAACTCAAGTCTGAAAATGACATCGCTCTTCAACTCACGA 352
Query 353 ACCCTACAGCTATCAACTCCGACGTCGAGGAACTTGAGCATGAAGTTTATAAGTTACAAC 412
||||| ||||||| |||||||||||||||||||||||||||||||||| || ||||||||
Sbjct 353 ACCCTGCAGCTATTAACTCCGACGTCGAGGAACTTGAGCATGAAGTTTGTAGGTTACAAC 412
Query 413 AACAACTTCTCATGGCAGAGGAAGAACTAAGGAAATACGAACCAGATCCAATCAGGTTTA 472
||||||| | |||||||| ||||||||||||| ||||||||| |||||| | || || |
Sbjct 413 AACAACTCCAAATGGCAGAAGAAGAACTAAGGAGATACGAACCGGATCCAGTAAGATTCA 472
Query 473 CAACAATGGAAGAGTACGAAACTTGTGAGAAGCAGCT-CATGGACAC-CTTAACACGTGT 530
| || ||||| || |||||| || ||||||||| || | | ||||| || ||||| |||
Sbjct 473 CGACCATGGAGGAATACGAAGTTTATGAGAAGCAACTTC-TCGACACTCT-AACACATGT 530
Query 531 CAATC-AACGACGGGAACATAT-ATTGAGTCAAGACCAATTATCTTCATATGAAGCATCT 588
|| || | || || ||| | || ||| ||| ||| |||||||| ||||||||||||
Sbjct 531 TG-TCCAAAGGCGAGACCATCTCAT-GAG-CAA--CCATTTATCTTCTTATGAAGCATCT 585
Query 589 GCTTTACAACAACAGCAAAGCATGGGTGGGCCTTTTGGAAACGACGTCGTTGGAGGATGG 648
|| | |||||| |||| ||| ||| ||||||| ||||||| ||||| ||| |||
Sbjct 586 ACTATGCAACAA-AGCAT----TGG-TGGTCCTTTTGTTAACGACGGCGTTGAAGGTTGG 639
Query 649 CTGAC-TGAAAATGGGCCTAA-CGAAGCCCATTTATTCGACGCATCGGCACATTC 701
|| || ||||||||||||||| | || |||||||||| || |||||||| |||||
Sbjct 640 CT-ACCTGAAAATGGGCCTAATCAAA-CCCATTTATTTGATGCATCGGCCCATTC 692
Score = 97.1 bits (52), Expect = 3e-19
Identities = 99/121 (82%), Gaps = 5/121 (4%)
Strand=Plus/Plus
Query 703 GCAATGTATGAAACTTTATTGCAAGGAAGTAGCTCAAGCTCGAACCAAAACAACATTATG 762
|||||||||||| | || |||||||||||||||||||||||||||||||||||||| | |
Sbjct 718 GCAATGTATGAACCATTGTTGCAAGGAAGTAGCTCAAGCTCGAACCAAAACAACATGA-G 776
Query 763 GGTGAAT-CCAATGTGTCAAATCATAACGGTGACATGTTTCAAGAATGGGCCCAAGCCTA 821
||||| ||| ||| | || || |||||||| ||||| | || ||||| || || ||
Sbjct 777 --TGAATGCCAC-GTGACGAACCACAACGGTGAAATGTTCCCTGAGTGGGCTCAGGCGTA 833
Query 822 T 822
|
Sbjct 834 T 834
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 51275323365
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5