BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT1G77990.1
Length=2203
Score E
Sequences producing significant alignments: (Bits) Value
Ahg316712 jgi|Araly1|316712|fgenesh1_pm.C_scaffold_2001745 3016 0.0
> Ahg316712 jgi|Araly1|316712|fgenesh1_pm.C_scaffold_2001745
Length=1950
Score = 3016 bits (1633), Expect = 0.0
Identities = 1869/1979 (94%), Gaps = 31/1979 (2%)
Strand=Plus/Plus
Query 161 ATGGGCATAGAGCTTCAGAATCACCAGAGCCACCATGAAGAAGCCAGTCCTGCAGAAGAG 220
||||||||||||||||||||||||||||||||||||||||||||| | || | ||||||
Sbjct 1 ATGGGCATAGAGCTTCAGAATCACCAGAGCCACCATGAAGAAGCCGGCCCCACGGAAGAG 60
Query 221 CCCATGTCACGGTGGCTGATAAATACGCCGGAACCACCAAGCATGTGGCAAGAGCTTATT 280
|| || ||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct 61 CCGATATCACGGTGGCTGATAAATACGCCGGAACCACCAAGCATGTGGCAAGAGCTTGTT 120
Query 281 GGGTACATAAGAACAAATGTCTTGGCCAAGAAGAAACATAAGAGGAACAAGACGAAGAAC 340
|||||||||||||||||||| ||||||||||||||||||| ||||||||| |||||||||
Sbjct 121 GGGTACATAAGAACAAATGTGTTGGCCAAGAAGAAACATAGGAGGAACAACACGAAGAAC 180
Query 341 TCATCATCAAACCTTGTTTACTCTTGTCTTAAATCGGCTTTCCCTATACTTAGTTGGGGA 400
||||||||||||| ||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct 181 TCATCATCAAACCCTGTTTACTCTTGTCTTAAATCGGTTTTCCCTATACTTAGTTGGGGA 240
Query 401 AGACAATACAAACTCAACTTGTTCAAGAAAGATTTGATGGCAGGTCTCACTCTCGCTAGT 460
|||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct 241 AGACAATACAAACTCAACTTCTTCAAGAAAGATTTGATGGCAGGTCTCACTCTCGCTAGT 300
Query 461 CTTTGCATTCCTCAGAGTATAGGATATGCTAATTTGGCTGGACTTGATCCAGAGTACGGT 520
||||||||||||||||||||||| ||||| ||||||||||||||||||||||||||||||
Sbjct 301 CTTTGCATTCCTCAGAGTATAGGGTATGCGAATTTGGCTGGACTTGATCCAGAGTACGGT 360
Query 521 CTATATACAAGTGTGGTACCACCTCTGATATATTCGACGATGGGAACTTCGAGAGAGTTA 580
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 361 CTATATACAAGTGTGGTACCACCTCTGATATATTCGACGATGGGAACTTCGAGAGAGTTA 420
Query 581 GCCATTGGTCCTGTGGCTGTAGTTTCGCTTCTTCTGTCGTCAATGGTTCGTGACCTTCAA 640
||||||||||||||||||||||||||||||||||| |||||||||||||||||| |||||
Sbjct 421 GCCATTGGTCCTGTGGCTGTAGTTTCGCTTCTTCTTTCGTCAATGGTTCGTGACATTCAA 480
Query 641 GATCCAGTCACCGACCCAATTGCTTACCGAAAAATTGTCTTCACTGTCACGTTTTTCGCT 700
||||| ||||||||||||||||||||||| |||| | | | || |||| | | |
Sbjct 481 GATCCGGTCACCGACCCAATTGCTTACCG-AAAAAT-T-GT--CT-TCAC-----T-G-T 527
Query 701 GGCGCGTTTCAAGCCATCTTTGGACTCTTCAGGTTAGGGTTTTTGGTGGACTTTTTGTCA 760
| ||||| || ||| | | |||||||||||||||||| |||||||||
Sbjct 528 --CACGTTT------TTCGCTGG---C-GC--GTTAGGGTTTTTGGTGGATTTTTTGTCA 573
Query 761 CATGCTGCACTTGTTGGGTTCATGGCTGGTGCTGCAATTGTCATTGGTTTACAACAACTT 820
||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct 574 CATGCTGCACTTGTTGGGTTCATGGCTGGTGCTGCCATTGTCATTGGTTTACAACAACTC 633
Query 821 AAAGGTTTATTTGGTTTGACTCATTTTACCAATAAAACCGATGTAGTTTCGGTTTTATCT 880
|||||||| ||||||||| ||||||||||||| ||||||||||| |||||||||||||||
Sbjct 634 AAAGGTTTGTTTGGTTTGTCTCATTTTACCAACAAAACCGATGTGGTTTCGGTTTTATCT 693
Query 881 TCGGTTTTCCACTCGCTTCACCATCCGTGGCAACCTCTGAACTTTGTCATCGGTAGCTCA 940
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 694 TCGGTTTTCCACTCGCTTCACCATCCGTGGCAACCTCTGAACTTTGTCATCGGTAGCTCA 753
Query 941 TTCCTCATCTTCATCCTCCTAGCTAGATTTATCGGAAAAAGAAACAATAAGTTGTTTTGG 1000
||||||||||||||||||||||||||||||||||| ||||||||||| || |||||||||
Sbjct 754 TTCCTCATCTTCATCCTCCTAGCTAGATTTATCGGGAAAAGAAACAAAAAATTGTTTTGG 813
Query 1001 ATTCCAGCGATGGCACCGCTAATATCAGTTGTATTAGCAACACTAATAGTGTATTTATCC 1060
||||| ||||||||||||||||||||||||||||||||||||||||| ||||||||| ||
Sbjct 814 ATTCCGGCGATGGCACCGCTAATATCAGTTGTATTAGCAACACTAATCGTGTATTTAACC 873
Query 1061 AATGCTGAGTCACGAGGGGTTAAGATTGTTAAACACATTAAACCAGGGTTTAACCAGCTT 1120
||||||||| | |||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct 874 AATGCTGAGACTCGAGGGGTTAAGATTGTTAAACACATTAAACCAGGGTTTAACCAACTT 933
Query 1121 TCAGTTAACCAATTACAATTCAAAAGTCCACATCTTGGTCAAATCGCCAAAATTGGTCTT 1180
|| ||||||||||||||||||||||| ||||||||||||||||| |||||||||||||||
Sbjct 934 TCGGTTAACCAATTACAATTCAAAAGCCCACATCTTGGTCAAATTGCCAAAATTGGTCTT 993
Query 1181 ATTTCTGCAATCATCGCCCTAACGGAAGCAATCGCAGTGGGAAGATCGTTTGCGACGATC 1240
|||||||||||||||||||||||||||||||| || ||||||||||||||||||||||||
Sbjct 994 ATTTCTGCAATCATCGCCCTAACGGAAGCAATTGCGGTGGGAAGATCGTTTGCGACGATC 1053
Query 1241 AAAGGATATCGTTTGGATGGGAACAAAGAGATGATGGCTATGGGATTTATGAATATCGCT 1300
|||||||||||| | |||||||||||||||||||||||||||||||||||||| ||||||
Sbjct 1054 AAAGGATATCGTCTCGATGGGAACAAAGAGATGATGGCTATGGGATTTATGAACATCGCT 1113
Query 1301 GGTTCTTTATCTTCTTGCTATGTAGCTACCGGGTCTTTCTCAAGAACGGCGGTGAATTTC 1360
|| |||||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct 1114 GGCTCTTTATCTTCTTGCTATGTAGCTACCGGGTCCTTCTCAAGAACGGCGGTGAATTTC 1173
Query 1361 AGTGCTGGTTGCGAGACGGTGGTTTCAAACATTGTAATGGCGATTACAGTGATGATTTCA 1420
|||||||| ||||||||| | ||||| ||||||||||||||||||||||||||||| |||
Sbjct 1174 AGTGCTGGCTGCGAGACGCTCGTTTCGAACATTGTAATGGCGATTACAGTGATGATATCA 1233
Query 1421 CTAGAAGTTTTGACGAGGTTTCTCTACTTCACACCAACGGCGATTCTTGCCTCCATAATC 1480
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1234 CTAGAAGTTTTGACGAGGTTTCTCTACTTCACACCAACGGCGATTCTTGCCTCCATAATC 1293
Query 1481 CTCTCGGCGCTTCCAGGTCTCATTGATGTCTCTGGTGCTTTACACATTTGGAAACTCGAT 1540
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1294 CTCTCGGCGCTTCCAGGTCTCATTGATGTCTCTGGTGCTTTACACATTTGGAAACTCGAT 1353
Query 1541 AAACTCGATTTTCTCGTCCTCATTGCCGCCTTCTTCGGCGTCCTCTTTGCCTCCGTCGAG 1600
||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct 1354 AAACTCGATTTTCTCGTCCTCATTGCCGCCTTCTTCGGCGTTCTCTTTGCCTCCGTCGAG 1413
Query 1601 ATCGGTCTTCTTCTCGCCGTGGGGATATCGTTTGCAAGAATAATGTTGAGTTCGATAAGA 1660
|||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1414 ATCGGTCTTCTTCTTGCCGTGGGGATATCGTTTGCAAGAATAATGTTGAGTTCGATAAGA 1473
Query 1661 CCAAGCATTGAGGCCTTAGGGAGGTTATCAAAAACAGATATCTTCGGTGACATAAATCAG 1720
|||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1474 CCAAACATTGAGGCCTTAGGGAGGTTATCAAAAACAGATATCTTCGGTGACATAAATCAG 1533
Query 1721 TATCCAATGGCAAATAAGACTGCAGGATTATTGACTCTTCGAATCAGTTCTCCTTTGCTA 1780
||||||||||| ||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct 1534 TATCCAATGGCTAATAAGACTCCAGGATTATTGACTCTTCGAATCAGTTCTCCTTTGCTA 1593
Query 1781 TGCTTTGCTAATGCCAATTTTATAAGAGACAGAATATTGAATTCAGTTCAAGAAATAGAA 1840
|||||||| |||||||||||||| ||||||||||||||||||||||||| |||| |||||
Sbjct 1594 TGCTTTGCCAATGCCAATTTTATTAGAGACAGAATATTGAATTCAGTTCGAGAAGTAGAA 1653
Query 1841 GGAGAGGAGAATGAACAAGAAGTT-CTAAAAGAAAATGGTCTTCAAGTAGTAATTCTCGA 1899
| |||||||||||||||||||||| | |||||||||||||||||||| ||||||||||||
Sbjct 1654 GAAGAGGAGAATGAACAAGAAGTTAC-AAAAGAAAATGGTCTTCAAGAAGTAATTCTCGA 1712
Query 1900 CATGTCTTGCGTGATGGGCGTAGATACATCAGGAGTATTTGCACTTGAAGAACTACATCA 1959
|||||||||||||||||| |||||||||||||||||| |||||||||||||||||||||
Sbjct 1713 CATGTCTTGCGTGATGGGGGTAGATACATCAGGAGTAGTTGCACTTGAAGAACTACATCG 1772
Query 1960 AGAGCTAGCTTCTAATGACATCCGGTTAGTCATCGCTAGTCCCAGATGGAGGGTACTTCA 2019
||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| ||
Sbjct 1773 AGAGCTAGCTTCTAATGACATCCGGTTAGTCATCGCTGGTCCCAGATGGAGGGTACTGCA 1832
Query 2020 CAAATTGAAGCGAGCAAAATTGGACGAGAAAAT-AAAGACAGAAAATATATATATGACAG 2078
|||||||||||||||||||||||||||||| | ||| |||||| ||||||||||||||
Sbjct 1833 CAAATTGAAGCGAGCAAAATTGGACGAGAAGTTGAAAT-CAGAAATTATATATATGACAG 1891
Query 2079 TAGGAGAAGCCGTAGATATTTATGTAAGAGCAAGATCTACGTCCCACGAGTTGTGTTGA 2137
|||||||||||||||||||||| |||||||||||||||||||||||||| |||||||||
Sbjct 1892 TAGGAGAAGCCGTAGATATTTACGTAAGAGCAAGATCTACGTCCCACGATTTGTGTTGA 1950
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 82922463365
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5