BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT1G78000.1
Length=2291
Score E
Sequences producing significant alignments: (Bits) Value
Ahg927205 jgi|Araly1|927205|scaffold_202766.1 3155 0.0
Ahg313103 jgi|Araly1|313103|fgenesh1_pm.C_scaffold_1001883 1070 0.0
> Ahg927205 jgi|Araly1|927205|scaffold_202766.1
Length=2014
Score = 3155 bits (1708), Expect = 0.0
Identities = 1904/1998 (95%), Gaps = 15/1998 (1%)
Strand=Plus/Plus
Query 55 ATAGCTATGTCGTCAAGAGCTCACCCTGTGGAC-G-G----AAGTCCGGCGACGGACGGT 108
||| |||||||||| |||||||||||||||||| | | |||||||||||| | |||
Sbjct 22 ATA-CTATGTCGTCGAGAGCTCACCCTGTGGACGGAGATTTAAGTCCGGCGACAGTTGGT 80
Query 109 GGACATGTTCCGATGAAACCT-TCACCCACTCGGCATAAAGTTGGAATCCCACCAAAGCA 167
||| | |||| |||||| || | ||||| |||||||||||||| || ||||| |||||
Sbjct 81 GGAGGTCTTCCAATGAAATCTCCCCCCCAC-CGGCATAAAGTTGGGATTCCACCGAAGCA 139
Query 168 AAACATGTTCAAGGATTTCATGTACACATTCAAAGAAACTTTCTTT-CATGATGATCCTC 226
|||||||||||||||||||||||||||||||||||||||||| ||| |||||||||||||
Sbjct 140 AAACATGTTCAAGGATTTCATGTACACATTCAAAGAAACTTT-TTTCCATGATGATCCTC 198
Query 227 TTAGGGATTTTAAGGATCAGCCTAAGTCTAAGCAGTTTATGCTCGGTCTCCAATCCGTCT 286
||||||||||||||||||||||||| |||||| |||||||||||||||||||||||||||
Sbjct 199 TTAGGGATTTTAAGGATCAGCCTAAATCTAAGAAGTTTATGCTCGGTCTCCAATCCGTCT 258
Query 287 TCCCGGTCTTCGATTGGGGACGTAACTACACTTTCAAGAAGTTCCGAGGTGATCTCATCT 346
|||||||||||||||||||||||||||||| | |||| ||||| ||||| ||||||||||
Sbjct 259 TCCCGGTCTTCGATTGGGGACGTAACTACAATCTCAAAAAGTTTCGAGGCGATCTCATCT 318
Query 347 CCGGTTTAACCATTGCAAGTCTCTGCATTCCTCAGGATATTGGATACGCTAAGTTGGCGA 406
| |||||||| || ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 319 CTGGTTTAACAATCGCAAGTCTCTGCATTCCTCAGGATATTGGATACGCTAAGTTGGCGA 378
Query 407 ATCTTGATCCCAAATACGGTTTATATTCGAGTTTTGTTCCTCCATTGGTGTATGCTTGTA 466
|||||||||||||||| |||||||||||||||||||||||||| ||||||||||||||||
Sbjct 379 ATCTTGATCCCAAATATGGTTTATATTCGAGTTTTGTTCCTCCGTTGGTGTATGCTTGTA 438
Query 467 TGGGAAGTTCTAGGGATATAGCAATAGGACCTGTCGCTGTGGTTTCGCTGTTGCTAGGCA 526
|||| |||||||||||||||||||| |||||||||||||||||||| |||||||||||||
Sbjct 439 TGGGGAGTTCTAGGGATATAGCAATCGGACCTGTCGCTGTGGTTTCTCTGTTGCTAGGCA 498
Query 527 CATTGCTTCGAGCTGAGATTGATCCAAACACAAGTCCAGATGAATATCTCCGCCTTGCCT 586
||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct 499 CATTGCTTCGAGCTGAGATTGATCCAAACACAAATCCAGATGAATATCTCCGCCTTGCCT 558
Query 587 TCACTGCTACGTTTTTCGCCGGTATAACCGAAGCAGCCCTTGGATTCTTCAGATTAGGAT 646
||||||| ||||||||||| ||||| |||||||||||||||||||||||||||||||| |
Sbjct 559 TCACTGCCACGTTTTTCGCTGGTATCACCGAAGCAGCCCTTGGATTCTTCAGATTAGGGT 618
Query 647 TCTTGATCGATTTCCTTTCCCACGCGGCTGTGGTTGGCTTCATGGGCGGCGCAGCCATCA 706
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 619 TCTTGATCGATTTCCTTTCCCACGCGGCTGTGGTTGGCTTCATGGGCGGCGCAGCCATCA 678
Query 707 CTATCGCTCTTCAGCAGCTTAAAGGCTTCCTCGGGATCAAGAAATTCACCAAGAAAACTG 766
|||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct 679 CTATCGCTCTTCAGCAGCTTAAGGGCTTCCTCGGGATCAAGAAATTCACCAAGAAAACTG 738
Query 767 ATATTATTTCTGTTCTTGAATCCGTTTTCAAAGCAGCTCATCACGGCTGGAATTGGCAGA 826
|||| ||| ||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct 739 ATATCATTGCTGTTCTTGAATCTGTTTTCAAAGCAGCTCATCACGGCTGGAATTGGCAGA 798
Query 827 CTATACTCATTGGTGCATCATTCTTGACCTTCCTTCTCACGTCTAAGATCATTGGGAAGA 886
||||||||||||||||||||||||||| |||||||||||| |||||| ||||||||||||
Sbjct 799 CTATACTCATTGGTGCATCATTCTTGAGCTTCCTTCTCACCTCTAAGTTCATTGGGAAGA 858
Query 887 AGAGCAAGAAACTATTCTGGGTACCAGCTATTGCGCCATTGATATCAGTTATCGTTTCCA 946
|||||||||||||||||||||||||||| |||||||||||||||||||||||| ||||||
Sbjct 859 AGAGCAAGAAACTATTCTGGGTACCAGCAATTGCGCCATTGATATCAGTTATCATTTCCA 918
Query 947 CCTTCTTTGTCTACATAACCCGAGCCGACAAACAAGGAGTCCAAATCGTGAAACACCTTG 1006
|||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct 919 CCTTCTTTGTCTACTTAACCCGAGCCGACAAACAAGGAGTCCAAATCGTGAAACACCTTG 978
Query 1007 ACCAAGGAATCAACCCTTCCTCGT-TCCATCTAATCTACTTCACTGGTGATAACCTTGCT 1065
|||||||||||||||||||||| | | ||||||||||||||||| |||||||||||||||
Sbjct 979 ACCAAGGAATCAACCCTTCCTC-TCTGCATCTAATCTACTTCACCGGTGATAACCTTGCT 1037
Query 1066 AAGGGCATCCGCATCGGTGTAGTCGCTGGCATGGTCGCTTTAACAGAAGCTGTAGCGATT 1125
||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1038 AAGGGCATCCGGATCGGTGTAGTCGCTGGCATGGTCGCTTTAACAGAAGCTGTAGCGATT 1097
Query 1126 GGAAGAACCTTTGCTGCAATGAAAGACTACCAAATCGACGGTAACAAAGAGATGGTAGCA 1185
||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct 1098 GGAAGAACCTTTGCTGCCATGAAAGACTACCAAATCGACGGTAACAAAGAGATGGTAGCA 1157
Query 1186 TTAGGTATGATGAACGTAGTTGGATCGATGTCTTCTTGCTACGTAGCTACCGGATCTTTC 1245
|||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1158 TTAGGTATGATGAATGTAGTTGGATCGATGTCTTCTTGCTACGTAGCTACCGGATCTTTC 1217
Query 1246 TCAAGATCAGCTGTCAATTTCATGGCTGGATGTCAAACAGCGGTTTCAAACATCATAATG 1305
||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1218 TCAAGATCAGCAGTCAATTTCATGGCTGGATGTCAAACAGCGGTTTCAAACATCATAATG 1277
Query 1306 TCAATTGTTGTTCTCTTGACATTGCTCTTCCTTACTCCTCTCTTCAAGTACACTCCAAAC 1365
|||||||| ||||||||||||||||||||||| ||||| || ||||||||||||||||||
Sbjct 1278 TCAATTGTCGTTCTCTTGACATTGCTCTTCCTGACTCCACTGTTCAAGTACACTCCAAAC 1337
Query 1366 GCCATCCTCGCAGCTATCATCATCAACGCTGTGATTCCTTTGATCGATATCCAAGCTGCT 1425
||||||||||||||||||||||||||||| || |||||||||||||||||||||||||||
Sbjct 1338 GCCATCCTCGCAGCTATCATCATCAACGCCGTAATTCCTTTGATCGATATCCAAGCTGCT 1397
Query 1426 ATTTTGATCTTCAAGGTTGATAAGCTCGATTTCATCGCCTGTATTGGAGCATTCTTTGGC 1485
||||||||||| |||||||||||||| ||||||||||| |||||||||||||||||||||
Sbjct 1398 ATTTTGATCTTTAAGGTTGATAAGCTAGATTTCATCGCTTGTATTGGAGCATTCTTTGGC 1457
Query 1486 GTCATCTTTGTTTCTGTTGAGATCGGACTTCTTATTGCCGTCTCGATCTCGTTTGCTAAG 1545
|||||||||||||| ||||||||||||||||| |||||||||||||||||||||||||||
Sbjct 1458 GTCATCTTTGTTTCCGTTGAGATCGGACTTCTCATTGCCGTCTCGATCTCGTTTGCTAAG 1517
Query 1546 ATCCTCTTGCAAGTAACAAGACCTAGAACTGCAGTTCTCGGAAATATTCCAAGAACTTCG 1605
|||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct 1518 ATCCTCTTGCAAGTAACAAGACCTAGAACTGCAGTTCTCGGAAATATTCCGAGAACTTCT 1577
Query 1606 GTTTACAGAAATATTCAACAGTATCCTGAAGCCACTATGGTTCCAGGGGTTCTTACTATT 1665
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1578 GTTTACAGAAATATTCAACAGTATCCTGAAGCCACTATGGTTCCAGGGGTTCTTACTATT 1637
Query 1666 CGTGTTGACTCCGCCATTTACTTCTCCAACTCAAATTATGTTAGAGAAAGGATCCAGAGA 1725
|||||||||||||| ||||||||||||||||||||||| || ||||||||||||||||||
Sbjct 1638 CGTGTTGACTCCGCGATTTACTTCTCCAACTCAAATTACGTCAGAGAAAGGATCCAGAGA 1697
Query 1726 TGGCTACATGAGGAAGAAGAAAAGGTAAAAGCAGCAAGCCTACCTAGGATTCAGTTTCTC 1785
||||| ||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1698 TGGCTTCATGAAGAAGAAGAAAAGGTAAAAGCAGCAAGCCTACCTAGGATTCAGTTTCTC 1757
Query 1786 ATCATCGAAATGTCACCTGTTACGGACATCGATACAAGTGGTATTCACGCATTAGAAGAC 1845
|||||||||||||||||||||||||||||||| ||||| ||||| ||||| |||||||||
Sbjct 1758 ATCATCGAAATGTCACCTGTTACGGACATCGACACAAGCGGTATCCACGCGTTAGAAGAC 1817
Query 1846 TTATACAAGTCTCTCCAGAAAAGAGACATTCAGTTGATTCTGGCGAATCCTGGACCGTTG 1905
||||||||||||||||||||||||||||||||||||||||| || |||||||||||||||
Sbjct 1818 TTATACAAGTCTCTCCAGAAAAGAGACATTCAGTTGATTCTAGCAAATCCTGGACCGTTG 1877
Query 1906 GTGATAGGCAAGCTACACTTGTCGCACTTTGCCGACATGTTAGGACAAGACAATATCTAT 1965
||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct 1878 GTGATAGGCAAGCTACACTTGTCGCACTTTGCCGACATGTTAGGACAAGACAACATCTAT 1937
Query 1966 CTAACGGTGGCTGATGCCGTCGAGGCTTGCTGTCCAAAACTCTCC-AACGAGGTCTGAAA 2024
|| || |||||||| ||||||||||||||||||||||||||||| || |||||||||||
Sbjct 1938 CTGACAGTGGCTGACGCCGTCGAGGCTTGCTGTCCAAAACTCTCAGAA-GAGGTCTGAAA 1996
Query 2025 TTTACaagaaagaagaag 2042
||||||||||||||||||
Sbjct 1997 TTTACAAGAAAGAAGAAG 2014
> Ahg313103 jgi|Araly1|313103|fgenesh1_pm.C_scaffold_1001883
Length=2052
Score = 1070 bits (579), Expect = 0.0
Identities = 1014/1224 (83%), Gaps = 30/1224 (2%)
Strand=Plus/Plus
Query 814 TGGAATTGGCAGACTATACTCATTGGTGCATCATTCTTGACCTTCCTTCTCA-CGTCTAA 872
|||||||||||||| ||||||||| ||||||| ||||||| ||||||||||| | || ||
Sbjct 844 TGGAATTGGCAGACAATACTCATTAGTGCATCGTTCTTGATCTTCCTTCTCATC-TCCAA 902
Query 873 GATCATTGGGAAGAAGAGCAAGAAACTATTCTGGGTACCAGCTATTGCGCCATTGA-TAT 931
| |||| |||||||| | ||||||||| || ||| | ||||| ||||| || || | |||
Sbjct 903 GTTCATAGGGAAGAAAAACAAGAAACTGTTTTGGATTCCAGCGATTGCTCCGTT-AGTAT 961
Query 932 CAGTTATCGTTTCCACCTTCTTTGTCTACATAACCCGAGCCGACAA-ACAAGGAGTCCAA 990
| || ||| |||| |||||||| ||||||||||||||||||||||| | ||||||| ||
Sbjct 962 CTGTCATCATTTCAACCTTCTTCGTCTACATAACCCGAGCCGACAAGA-AAGGAGTTCAG 1020
Query 991 ATCGTGAAACACCTTGACCAAGGAATCAACCCTTCCTCGTTCCATCTAATCTACTTCACT 1050
|| |||||||| |||||| |||| | |||||||| || || | |||||| |||||| |
Sbjct 1021 ATAGTGAAACATCTTGACAAAGGTCTAAACCCTTCTTCTTTGCGTCTAATATACTTCTCC 1080
Query 1051 GGTGATAACCTTGCT-AAGGGCATCCGCATCGGTGTAGTCGCTGGCATGGTCGCTTTAAC 1109
|| ||| ||||| || |||||| ||||||| || || ||| | |||||||| || || ||
Sbjct 1081 GGCGATTACCTT-CTCAAGGGCTTCCGCATAGGCGTTGTCTCAGGCATGGTTGCCTTGAC 1139
Query 1110 AGAAGCTGTAGCGATTGGAAGAACCTTTGCTGCAATGAAAGACTACCAAATCGACGGTAA 1169
|||||||||||||| |||||||| ||||| ||||||||||||||||||||||| |||||
Sbjct 1140 GGAAGCTGTAGCGATAGGAAGAACATTTGCAGCAATGAAAGACTACCAAATCGATGGTAA 1199
Query 1170 CAAAGAGATGGTAGCATTAGGTATG--ATGAACGTAG-TTGGATCGATGTCTTCTTGCTA 1226
||||||||||||||||||||| | | |||||||| | | || |||||| | ||||||||
Sbjct 1200 CAAAGAGATGGTAGCATTAGG-A-GCAATGAACGT-GATCGGTTCGATGACCTCTTGCTA 1256
Query 1227 CGTAGCTACCGGATCTTTCTCAAGATCAGCTGTCAATTTCATGGCTGGATGTCAAACAGC 1286
||| | ||||| || ||||||||||| |||||||| |||||||| ||||||||||| ||
Sbjct 1257 TGTATCCACCGGTTCGTTCTCAAGATCCGCTGTCAACTTCATGGCCGGATGTCAAACGGC 1316
Query 1287 GGTTTCAAACATCATAATGTCAATTGTTGTTCTCTTGAC-ATTGCTCTTCCTTACTCCTC 1345
|| || |||||||| ||||| || || || ||||| || || |||||||| |||||||
Sbjct 1317 AGTCTCCAACATCATCATGTCCATCGTCGTCCTCTTAACGCTT-CTCTTCCTCACTCCTC 1375
Query 1346 TCTTCAAGTACACTCCAAACGCCATCCTCGCAGCTATCATCATCAACGCTGTGATTCCTT 1405
| ||||| ||||| || ||||| || || ||||| |||||||||||||| ||||||||||
Sbjct 1376 TTTTCAAATACACACCCAACGCAATTCTTGCAGCGATCATCATCAACGCCGTGATTCCTT 1435
Query 1406 TGATCGATATCCAA-GCTGCTATTTTGATCTTCAAGGTTGATAAGCTCGATTTCATCGCC 1464
|| | || | || ||| | |||||||| |||||| | |||||||||||||| | ||
Sbjct 1436 TGGTTGACGT-TAATGCTACCATTTTGATTTTCAAGATCGATAAGCTCGATTTTGTTGCT 1494
Query 1465 TGTATTGGAGCATTCTTTGGCGTCATCTTTGTTTCTGTTGAGATCGGACTTCTTATTGCC 1524
||||| || || |||||||| ||||||||||| || || ||||| || ||||| || |||
Sbjct 1495 TGTATGGGGGCTTTCTTTGGTGTCATCTTTGTATCCGTAGAGATTGGCCTTCTAATAGCC 1554
Query 1525 GTCTCGATCTCGTTTGCTAAGATCCTCTTGCAAGTAACAAGACCTAGAACTGCAGTTCTC 1584
|| ||| || ||||| ||||| || |||||||| || |||||||| || ||| ||||
Sbjct 1555 GTGGGGATATCTTTTGCCAAGATACTTTTGCAAGTTACGAGACCTAGGACAGCAATTCTT 1614
Query 1585 GGAAATATTCCAAGAACTTCGGTTTACAGAAATATTCAA-CAGTATCCTGAAGCCACTAT 1643
||||| || ||| | |||||||||||||| |||| |||| |||||||||||||| ||||
Sbjct 1615 GGAAAGATACCAGGGACTTCGGTTTACAGGAATA-TCAATCAGTATCCTGAAGCGACTA- 1672
Query 1644 GG-TTCCAGGGGTTCTT-ACTATTCGTGTTGACTCCGCCATTTACTTCTCCAACTCAAAT 1701
|| |||| || ||| || || ||||||||||||||||| |||||||||||||| || |||
Sbjct 1673 GGATTCCCGGAGTT-TTGACAATTCGTGTTGACTCCGCGATTTACTTCTCCAATTCCAAT 1731
Query 1702 TATGTTAGAGAAAGGATCCAGAGATGGCT-ACATGAGGAAGAAGAAAAGGTAAAAGCAGC 1760
||||| || |||||||| || |||||| | ||| || |||||||| | ||| ||||| ||
Sbjct 1732 TATGTCAGGGAAAGGATTCAAAGATGGTTGACA-GATGAAGAAGAGATGGTGAAAGCTGC 1790
Query 1761 AAGCCTACCTAGGATTCAGTTTCTCATCATCGAAATGTCACCTGTTACGGACATCGATAC 1820
|||| | || ||||| |||||||| |||||||||||||||||||||||||||||||||||
Sbjct 1791 AAGCTTGCCGAGGATCCAGTTTCTTATCATCGAAATGTCACCTGTTACGGACATCGATAC 1850
Query 1821 AAGTGGTATTCACGCATTAGAAGACTTATACAAGTCTCTCCAGAAAA-GAGACATTCAGT 1879
|| || ||||| || |||||||||||||| ||||||||| | |||| || |||||||||
Sbjct 1851 TAGCGGGATTCATGCCTTAGAAGACTTATATAAGTCTCTCTA-AAAACGATACATTCAGT 1909
Query 1880 TGATTCTGGCGAATCCTGGACCGTTGGTGATAGGCAAGCTACAC-TTGTCGCACTTTGCC 1938
|| |||| |||||||| |||||| ||| |||| ||||||||| || || ||||||||
Sbjct 1910 TGGTTCTAGCGAATCCAGGACCGCCGGTCATAGATAAGCTACACGTT-TCTCACTTTGCA 1968
Query 1939 GACATGTTAGGACAAGACAATATCTATCTAACGGTGGCTGATGCCGTCGAGGCTTGCTGT 1998
|||||||||||||| ||||| |||| ||| ||||||||||| ||||| || |||||| |
Sbjct 1969 GACATGTTAGGACAGGACAAAATCTTTCTGACGGTGGCTGAAGCCGTGGATTCTTGCTCT 2028
Query 1999 CCAAAACTCTCCAACGAGGTCTGA 2022
|| ||||||||| |||||||||||
Sbjct 2029 CCTAAACTCTCCGACGAGGTCTGA 2052
Score = 494 bits (267), Expect = 1e-138
Identities = 515/633 (81%), Gaps = 24/633 (4%)
Strand=Plus/Plus
Query 163 AAGCAAAACATGTTCAAGGATTTCATGTACACATTCAAAGAAACTTTCTTTCATGATGAT 222
||||||||| | ||||| || ||||||||||| ||||||||||||||||| || ||||||
Sbjct 112 AAGCAAAACCTCTTCAATGAGTTCATGTACACTTTCAAAGAAACTTTCTTCCACGATGAT 171
Query 223 CCTCTTAGGGATTTTAAGGATCAGCCTAAGTCTAAGCAGTTTATGCTCGGTCTCCAATCC 282
||||| ||| |||| ||||| ||| | ||||| ||| || | ||||||||| |||| |||
Sbjct 172 CCTCTAAGGCATTTCAAGGACCAGTCAAAGTCCAAGAAGCTCATGCTCGGTATCCAGTCC 231
Query 283 GTCTTCCCGGTCT-TCGATTGGGGACGTAACTACACT-TTCAAGAAGTTCCGAGGTGATC 340
||||||||||| | |||| |||||| | || || | | || |||| ||| || || ||||
Sbjct 232 GTCTTCCCGGT-TATCGAGTGGGGAAGAAAATATAATCTT-AAGATGTTTCGCGGCGATC 289
Query 341 TCATCT-CCGGTTTAACCATTGCAAGTCTCTGCATTCCTCAGGATATTGGATACGCTAAG 399
| || | ||||||||||||| || ||||||||||||||||||||||||||||| || |||
Sbjct 290 TTAT-TGCCGGTTTAACCATAGCCAGTCTCTGCATTCCTCAGGATATTGGATATGCAAAG 348
Query 400 TTGGCGAATCTTGATCCCAAA-TACGGTTTATATTCGAGTTTTGTTCCTCCATTGGTGTA 458
| || | |||||| ||| || || ||| ||||||| |||||||||||||| ||||||||
Sbjct 349 CTCGCCAGTCTTGA-CCCTAAGTATGGTCTATATTCAAGTTTTGTTCCTCCGTTGGTGTA 407
Query 459 TGCTTGTATGGGAAGTTCTAGGGATATAGCAATAGGACCTGTCGCTGTGGTTTCGCTG-T 517
|| ||||||||||| || | ||||||||| || ||||| || || ||||||||||| |
Sbjct 408 CGCATGTATGGGAAGCTCAAAGGATATAGCGATTGGACCCGTGGCAGTGGTTTCGCTCCT 467
Query 518 TGCTAGGCACAT-TGCTTCGAGCTGAGATTGATCCAAACACAAGTCC-AGATGAATATCT 575
| |||| || | ||||||| |||||||| || || ||||||| || | | ||||||||
Sbjct 468 TT-TAGGTAC-TCTGCTTCGGGCTGAGATCGACCCCAACACAAACCCTA-ACGAATATCT 524
Query 576 CCGCCTT-GCCTTCAC-TGCTACGTT-TTTCGCCGGTATAAC-CGAAGCAGCCCTTGGAT 631
|||| || |||||||| | | ||||| ||| |||||| | || | ||||||| || || |
Sbjct 525 CCGC-TTAGCCTTCACCTCC-ACGTTCTTT-GCCGGTGTCACTC-AAGCAGCACTAGGGT 580
Query 632 TCTTCAGATTAGGATTCTTGATCGATTTCCTT-TCCCACGCGGCTGTGGTTGGCTTCATG 690
|||| ||||| || ||||||||||||||| || |||||||| || || || || ||||||
Sbjct 581 TCTTTAGATTGGGTTTCTTGATCGATTTC-TTATCCCACGCCGCGGTAGTAGGGTTCATG 639
Query 691 GGCGGCGCAGCCATCACTATCGCTCTTCAGCAGCTTAAAGGCTTCCTCGGGATCAAGAAA 750
|| || ||||||||||| || || ||||| ||||| ||||| |||||||| ||||| ||
Sbjct 640 GGTGGAGCAGCCATCACCATTGCGCTTCAACAGCTCAAAGGATTCCTCGGAATCAATAAG 699
Query 751 TTCACCAAGAAAACTGATATTATTTCTGTTCTT 783
||||| |||||||| ||||| || | ||||||
Sbjct 700 TTCACAAAGAAAACCGATATCATCGCGGTTCTT 732
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 86274404925
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5