BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT1G78010.1
Length=1872
Score E
Sequences producing significant alignments: (Bits) Value
Ahg927204 jgi|Araly1|927204|scaffold_202765.1 2719 0.0
> Ahg927204 jgi|Araly1|927204|scaffold_202765.1
Length=1725
Score = 2719 bits (1472), Expect = 0.0
Identities = 1641/1724 (95%), Gaps = 5/1724 (0%)
Strand=Plus/Plus
Query 15 TGAGTTTAGGTTGCAGTGTCAATGGTGAGTCTCCTCTGCTTCCGTTCAGTCGGCGTTTAT 74
|||| ||||||||||||||| ||||| | |||||||| ||||||||| ||||||||| ||
Sbjct 2 TGAGCTTAGGTTGCAGTGTCGATGGTAAATCTCCTCTCCTTCCGTTCCGTCGGCGTTCAT 61
Query 75 CTTCTCCGACAAGCTACGCCGATTATAACCCGAGGCGGAAGAATCTCGAGACCCATCTCT 134
||||||||||| ||||||||||| ||||||||||||||||||||||||| |||||||||
Sbjct 62 CTTCTCCGACATGCTACGCCGATCATAACCCGAGGCGGAAGAATCTCGAAACCCATCTCG 121
Query 135 AAAAATCTCTGCTTTGTTTTATTCTCTTCGTCTCCTAAAACCTCTCTTCTTAAACCTCGC 194
||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct 122 AAAAATCTCTGCTTTGTCTTATTCTCTTCGTCTCCTAAAACCTCTCTTCTTAAACCTCGC 181
Query 195 GCT-CAGTCATCAGAGAACAATTCTCTTGTGTTTAAAGGCGATGAGCGTGTGGTGGGTCT 253
||| | |||||||||| |||||||||||||||||| ||||||||||||||||||||||||
Sbjct 182 GCTGC-GTCATCAGAGGACAATTCTCTTGTGTTTAGAGGCGATGAGCGTGTGGTGGGTCT 240
Query 254 TGTGGGCAAGGTAGTAGACGATGCATTCGATAAAGTTGATAGGTTTCAGAGCTCAAGTAC 313
||||||||||||||||||||||||||||||| | || |||||||||||||||||||||||
Sbjct 241 TGTGGGCAAGGTAGTAGACGATGCATTCGATGACGTCGATAGGTTTCAGAGCTCAAGTAC 300
Query 314 TATTGTGGCGATCGTAACGCCGATTGGTGGACCACCTGGTGCGGTGGGAATTGTGCGGTT 373
||||||||||| ||||| |||||||||||||||||||||||||||||||| ||||||||
Sbjct 301 AATTGTGGCGATTGTAACACCGATTGGTGGACCACCTGGTGCGGTGGGAATCGTGCGGTT 360
Query 374 GTCAGGTCCTAAGGCTGTGGAAGTTGCTA-GAAGAGTCTTTCGTTCTGCTAAGAAAACGA 432
||| || |||||||||||||||||||| | ||||||||||||||||||||||||||| ||
Sbjct 361 GTCGGGACCTAAGGCTGTGGAAGTTGC-AGGAAGAGTCTTTCGTTCTGCTAAGAAAAGGA 419
Query 433 AGAAGAAGGAGTCTGATTCGGATACGTGGCGGCCCAAGAGTCATTTTGTGGAGTATGGAG 492
|||||||||| || ||||||||| | |||| ||||||||||||||| ||||| |||||||
Sbjct 420 AGAAGAAGGACTCGGATTCGGATTCATGGCAGCCCAAGAGTCATTTCGTGGAATATGGAG 479
Query 493 CTGTTGTTGATTCAAATGGCAATGTTGTTGACGAGGTTTTAGCTGTGCCTATGTTGGCTC 552
||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct 480 TTGTTGTTGATTCACATGGCAATGTTGTTGACGAGGTTTTAGCTGTGCCTATGTTGGCTC 539
Query 553 CTCGGTCATACACTCGTGAAGATGTAGTTGAGCTCCAATGTCACGGGAGCGAAGTTTGTC 612
|||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct 540 CTCGGTCATACACTCGAGAAGATGTAGTTGAGCTCCAATGTCACGGGAGCGAAGTTTGTC 599
Query 613 TGCGGCGTGTTTTGAGGACATGTGTTGAAGCTGGAGCACGATTAGCAGAACCAGGAGAGT 672
||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct 600 TGCGGCGTGTTTTGAGGACGTGTGTTGAAGCTGGAGCACGATTAGCAGAACCAGGAGAGT 659
Query 673 TCACACTTCGTGCCTTTCTAAATGGGCGTTTAGACCTTTCGCAAGCTGAAAATGTCGAAA 732
| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 660 TTACACTTCGTGCCTTTCTAAATGGGCGTTTAGACCTTTCGCAAGCTGAAAATGTCGAAA 719
Query 733 AACTTATTTCGGCCAAGTCTTCTGCTGCCGCAGATGCTGCTTTGGAAGGGATTCAGGGAG 792
|||||||||||||||||||||||||||| || ||||||||||||||||||||||||||||
Sbjct 720 AACTTATTTCGGCCAAGTCTTCTGCTGCTGCTGATGCTGCTTTGGAAGGGATTCAGGGAG 779
Query 793 GTTTTTCATCTTTGGTCAAATCCTTAAGAGCACAATGCATTGAGCTCCTCACTGAAATTG 852
| |||||||||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct 780 GGTTTTCATCTTTGGTCAAATCATTAAGAGCACAATGCATTGAGCTCCTCACTGAAATTG 839
Query 853 AAGCTCGTTTAGACTTTGAGGACGAGATGCCACCATTGGATATAGAGTCAGTTATTAACA 912
||||||||||||||||||||||||||||| | ||||||||||||||||||||||||||||
Sbjct 840 AAGCTCGTTTAGACTTTGAGGACGAGATGACGCCATTGGATATAGAGTCAGTTATTAACA 899
Query 913 AAATAACCAGCATGTCTCAAGACGTAGAAAGTGCATTAGATACAGCAAACTATGACAAGC 972
|||||| ||||||||||||||||||||||||||||||||| ||||||||||| |||||||
Sbjct 900 AAATAAACAGCATGTCTCAAGACGTAGAAAGTGCATTAGAAACAGCAAACTACGACAAGC 959
Query 973 TTCTTCAAAGCGGATTGCAGATAGCTATTGTTGGACGTCCCAATGTCGGGAAATCAAGTC 1032
|||||| ||||||||||||||||||||||||||| ||||| ||||| |||||||||||||
Sbjct 960 TTCTTCGAAGCGGATTGCAGATAGCTATTGTTGGGCGTCCGAATGTTGGGAAATCAAGTC 1019
Query 1033 TTCTAAATGCCTGGAGCAAAAGTGAGAGAGCCATTGTTACAGAAGTTGCTGGAACTACTC 1092
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1020 TTCTAAATGCCTGGAGCAAAAGTGAGAGAGCCATTGTTACAGAAGTTGCTGGAACTACTC 1079
Query 1093 GAGACGTTGTGGAAGCTAATGTTACAGTCCGCGGCGTGCCTATCACACTTCTTGACACTG 1152
||||||||||||||||||||||||||||||| ||||| ||||||||||||||||||||||
Sbjct 1080 GAGACGTTGTGGAAGCTAATGTTACAGTCCGTGGCGTTCCTATCACACTTCTTGACACTG 1139
Query 1153 CTGGTATCAGAGAAACCAATGACATTGTCGAAAAAATAGGAGTTGAAAGATCAGAAACAG 1212
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1140 CTGGTATCAGAGAAACCAATGACATTGTCGAAAAAATAGGAGTTGAAAGATCAGAAACAG 1199
Query 1213 CTGCTAAGGTTGCTGATGTCATAATCATGGCTGTGAGTGCTGTCGAAGGCTGGACTGAAG 1272
||||||||||||||||||||||||||||| | ||||||||||| ||||||||||||||||
Sbjct 1200 CTGCTAAGGTTGCTGATGTCATAATCATGACGGTGAGTGCTGTTGAAGGCTGGACTGAAG 1259
Query 1273 AAGACACTGAGCTTCTACGTAAGATCCAATCAGACAAGCCTATGATTCTGGTGATGAACA 1332
|||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1260 AAGACACTGAGCTTTTACGTAAGATCCAATCAGACAAGCCTATGATTCTGGTGATGAACA 1319
Query 1333 AAATTGACTGTGCTCCTCCTGGTAGCTGTGATCAACTAGAAGATCAGAGGAAAAAGGAAG 1392
||||||| |||||||||| | ||||||||||||||||||| |||||||||||||||||||
Sbjct 1320 AAATTGATTGTGCTCCTCTTAGTAGCTGTGATCAACTAGAGGATCAGAGGAAAAAGGAAG 1379
Query 1393 AAGTTTTCCATAAGTCTGTCTTCACTTCTGCTGTAACTGGTCAAGGAATTGAAGAGCTTG 1452
||||||||||||||||||||||||| |||||||| |||||||||||| ||||||||||||
Sbjct 1380 AAGTTTTCCATAAGTCTGTCTTCACATCTGCTGTTACTGGTCAAGGACTTGAAGAGCTTG 1439
Query 1453 AAGATGCAATATTGGAGATTCTTGGTCTTGATCGTGTCCCCACTGGAGGACATCAATGGA 1512
| |||||||||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct 1440 AGGATGCAATATTGGAGATTCTTGGTCTTGATCGTGTCCCTACTGGAGGACATCAATGGA 1499
Query 1513 CTGTGAATCAGAGACAATGCGAGCAATTGGTGCGGACGAAAGAAGCGCTAGTGAGGCTGA 1572
| ||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct 1500 CAGTGAATCAGAGACAATGCGAGCAATTGGTGCGGACGAAAGAAGCGCTAGCGAGGCTGA 1559
Query 1573 GAGAAGCTATCGAAGACGAGATTCCGATTGATTTCTGGACGATCGAGCTTAGAGAAGCTG 1632
|| |||| || ||||| |||||||||||||||||||||||||||||||| ||||||||||
Sbjct 1560 GACAAGCGATAGAAGAAGAGATTCCGATTGATTTCTGGACGATCGAGCTGAGAGAAGCTG 1619
Query 1633 CTTTATCTCTTGCTCAAATCAGTGGTCAAGATGTCTCTGAAGAGGTTTTATCTTCCATTT 1692
|||| ||||||||||||||||||| |||||||||||||||||||| ||||| |||||||
Sbjct 1620 CTTTGGCTCTTGCTCAAATCAGTGGCCAAGATGTCTCTGAAGAGGTCTTATCCTCCATTT 1679
Query 1693 TTGCTAAGTTTTGCATTGGTAAATAAA-CAGTTGCCACTTAATT 1735
||||||||||||| || |||||||||| ||||||||||||||||
Sbjct 1680 TTGCTAAGTTTTGTATCGGTAAATAAATCAGTTGCCACTTAATT 1723
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 70314592270
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5