BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT1G78020.1
Length=847
Score E
Sequences producing significant alignments: (Bits) Value
Ahg476964 jgi|Araly1|476964|fgenesh2_kg.2__2094__AT1G78020.1 1227 0.0
> Ahg476964 jgi|Araly1|476964|fgenesh2_kg.2__2094__AT1G78020.1
Length=820
Score = 1227 bits (664), Expect = 0.0
Identities = 731/763 (96%), Gaps = 6/763 (1%)
Strand=Plus/Plus
Query 88 GAATACGATGTTGCTTGGAAAGAGACAACGACCACCGATCAACAGAACCACAAGTCTATC 147
|||||||||||||||||| ||||||||||||||||| || ||||||||||||||||||||
Sbjct 61 GAATACGATGTTGCTTGGGAAGAGACAACGACCACCTATTAACAGAACCACAAGTCTATC 120
Query 148 GGAGATAAAGTTCGATCTAAACCTTCCCAGCGAGTCAGAGCCATCAAATCAACAGAAGCC 207
||||||||||||||||||||||||||||||||| |||||||| |||||||||||||| |
Sbjct 121 GGAGATAAAGTTCGATCTAAACCTTCCCAGCGAATCAGAGCCGTCAAATCAACAGAATCA 180
Query 208 AACCGTTGCGAGCCCGTACGGTTCCAACGGTCAAGCTGTAACAGCAGCCGTTGATCAAAA 267
|||||| | ||||||||||||||||||||||||||| |||||||||||||| ||||||||
Sbjct 181 AACCGTGGTGAGCCCGTACGGTTCCAACGGTCAAGCCGTAACAGCAGCCGTCGATCAAAA 240
Query 268 CCGTGGGTTCTTAGATCAACGGCTCTTATCCATGGTCACACCGAGAGGTAACCTGAGGAG 327
||||| |||||||||||||||| ||||||| |||||| ||||||||||||||||||||||
Sbjct 241 CCGTGCGTTCTTAGATCAACGGTTCTTATCTATGGTCTCACCGAGAGGTAACCTGAGGAG 300
Query 328 ACACTCAGGCGATTTCTCCGACGCTGGACATTTCTTGAGATCTTGCGCACTTTGTGAACG 387
|||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct 301 ACACTCAGGCGATTTCTCCGACGCTGGACATTTCTTGAGATCTTGCTCACTTTGTGAACG 360
Query 388 CCTTCTTGTTCCTGGCCGCGACATCTATATGTATAGGGGAGATAAGGCTTTTTGTAGCTC 447
||||||||||||||||| ||||||||||||||||||||||||||||| |||||||||||
Sbjct 361 TCTTCTTGTTCCTGGCCGTGACATCTATATGTATAGGGGAGATAAGGCCTTTTGTAGCTC 420
Query 448 AGAGTGCAGGCAAGAGCAAATGGCACAAGATGAGAGGAAAGAGAAAGGTAAATCGGCGGC 507
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 421 AGAGTGCAGGCAAGAGCAAATGGCACAAGATGAGAGGAAAGAGAAAGGTAAATCGGCGGC 480
Query 508 ACCGGCGAAAGAACCGGCGGTGACAGCTCCCGCGAGAGCGAAACCCGGCAAAGGGAGAGC 567
|||||||||||||||||||||||||||||| ||||||||||||||||| |||||||||||
Sbjct 481 ACCGGCGAAAGAACCGGCGGTGACAGCTCCGGCGAGAGCGAAACCCGGTAAAGGGAGAGC 540
Query 568 TGCAGCCGCCGTGTAATCCCCATTTTCATATACATTTTAGCTATATATATGTGTGGTTTG 627
|||||||||||||||||||||||||||||||||| ||||| ||||||| |||||||||||
Sbjct 541 TGCAGCCGCCGTGTAATCCCCATTTTCATATACA-TTTAGTTATATATGTGTGTGGTTTG 599
Query 628 CTATGTGTTTGTATATGATTATGATGGGTAATACATATATAAAGCATTAAGCGTTAATTA 687
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 600 CTATGTGTTTGTATATGATTATGATGGGTAATACATATATAAAGCATTAAGCGTTAATTA 659
Query 688 ACCGTGATTAACTGTGTTAATCACCCTCGTGTTGTGGTGAAATTAGATGATTTT-CGAGG 746
|||||||||||||||||||||||||||||||||||||||||| ||||||||||| |||||
Sbjct 660 ACCGTGATTAACTGTGTTAATCACCCTCGTGTTGTGGTGAAAGTAGATGATTTTTCGAGG 719
Query 747 GTT-AAATTTTACAAGTTTTGATCTATTTGAAATAAAATCAAATGTATTATATATATGTA 805
||| ||||||||||||||||||||||||| ||||||||||||||||||||||||| |||
Sbjct 720 GTTCAAATTTTACAAGTTTTGATCTATTTCAAATAAAATCAAATGTATTATATAT--GTA 777
Query 806 AGACTTGTGTTTGTT-AAGTACTTAATGAGAAAAATTAAGATT 847
|||||||||||| || |||||||||||||||||||||||||||
Sbjct 778 AGACTTGTGTTTTTTTAAGTACTTAATGAGAAAAATTAAGATT 820
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 31337037774
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5