BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT1G78040.1
Length=938
Score E
Sequences producing significant alignments: (Bits) Value
Ahg476963 jgi|Araly1|476963|fgenesh2_kg.2__2093__AT1G78040.1 1186 0.0
Ahg927208 jgi|Araly1|927208|scaffold_202769.1 667 0.0
Ahg909428 jgi|Araly1|909428|Al_scaffold_0002_2509 289 3e-77
> Ahg476963 jgi|Araly1|476963|fgenesh2_kg.2__2093__AT1G78040.1
Length=871
Score = 1186 bits (642), Expect = 0.0
Identities = 812/889 (91%), Gaps = 32/889 (4%)
Strand=Plus/Plus
Query 1 AACGGTGTGGGCTAATCTCACGCGCTTTCATCA---TCTT-CTTCCTAGATTCGCTCCTC 56
||||||||||||||||||||||||||||||||| |||| |||||||||||||||||||
Sbjct 1 AACGGTGTGGGCTAATCTCACGCGCTTTCATCATCTTCTTCCTTCCTAGATTCGCTCCTC 60
Query 57 CACTGTCTTAAATTTCACTAtcttcttcttcattttccttccttctcacttcaaatccat 116
|||||||||||||||||||| ||||||||| |||||||||||||||||||||||||||
Sbjct 61 CACTGTCTTAAATTTCACTA---TCTTCTTCA-TTTCCTTCCTTCTCACTTCAAATCCAT 116
Query 117 aatcgctctacttctctctctctctctAGATTCGAAAAAATGGCGAAACTGGTGATGTTG 176
||| ||| | || ||||||||||||| || |||||||||||||||||||||||||
Sbjct 117 AAT--CTC-GC--AACT-TCTCTCTCTAGATCCG-AAAAATGGCGAAACTGGTGATGTTG 169
Query 177 TTGGTTCTCTGTATCTTACCGGCGATAGCCATGGCGGCAAGGAGGGGAAATATTGGAAAG 236
||||||||||||||||| ||||||||||||||||| || |||||||||||||||||||
Sbjct 170 TTGGTTCTCTGTATCTTGCCGGCGATAGCCATGGCCGC---GAGGGGAAATATTGGAAAG 226
Query 237 AATACAATGGTGGTTCAAGGTAGCACCTACTGTGACATTTGCAAATTCGGCTTCGAGACT 296
||||||||||||||||||||| |||| ||||||||| |||||||||||||||||||||||
Sbjct 227 AATACAATGGTGGTTCAAGGTCGCACTTACTGTGACCTTTGCAAATTCGGCTTCGAGACT 286
Query 297 CCTGAATCCTCCTACTTCATCCCCGGTGCAACGGTGAAGCTATCATGCAAAGACAGGAAG 356
||||| || |||||||||||||||||||||||||||||||| ||||||| ||||||||||
Sbjct 287 CCTGAGTCATCCTACTTCATCCCCGGTGCAACGGTGAAGCTTTCATGCAGAGACAGGAAG 346
Query 357 ACAATGGAAGAGGTTTACACAGACAAAGCTGTATCAGACAAAGAAGGAAAGTATAAGTTC 416
|||||||| ||||||||||| ||| ||||||||||||||||| ||||||| || ||||||
Sbjct 347 ACAATGGAGGAGGTTTACACTGACGAAGCTGTATCAGACAAACAAGGAAATTACAAGTTC 406
Query 417 ATTGTCCACGACGATCACAGAGACCAGATGTGCGATGTTTTGCTTGTGAAAAGCTCGGAT 476
|||||||||||||| |||| |||| ||||||||||||||||||| ||||||||| | | |
Sbjct 407 ATTGTCCACGACGAGCACAAAGACGAGATGTGCGATGTTTTGCTAGTGAAAAGCGCAG-T 465
Query 477 -AAAACCTGCTCTAAAATCTCCGTTGGACGTGAGAAGTCTCGTGTGATCTTGAACCATTA 535
|| |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 466 CAAGGGATGCTCTAAAATCTCCGTTGGACGTGAGAAGTCTCGTGTGATCTTGAACCATTA 525
Query 536 CAGTGGCATTGCCTCGCAGATCAGACATGCTAACAACATGGGATTTGAGAAAGAAGTGAG 595
|||||||||||||||||||||||| || ||||||||||||||||| ||||||||||||||
Sbjct 526 CAGTGGCATTGCCTCGCAGATCAGGCACGCTAACAACATGGGATTCGAGAAAGAAGTGAG 585
Query 596 TGATGTGTTCTGCTCTGCTTTGTTTCAGAAGTATATGGTTGATGAAGATGAGGATGATAT 655
|||||||||||||||||| ||||||| ||||||||||||||||||||||||||||||||
Sbjct 586 CGATGTGTTCTGCTCTGCTCTGTTTCACAAGTATATGGTTGATGAAGATGAGGATGATAT 645
Query 656 TAAAAACCATCTCTAATCTCTCTGTTT--AATCTTATGATCTGCTGTT-TTCTT-CATTA 711
||||||||||||||||||||||||||| ||||||||| | ||||||| || || |||||
Sbjct 646 TAAAAACCATCTCTAATCTCTCTGTTTTTAATCTTATGGTATGCTGTTCTTTTTTCATTA 705
Query 712 ATGAGTTTCGAGTTATGGAAG-AGATATATTTGTATTTGTTTGATTACTTATTTGT-TGT 769
|||||||||| |||||||||| |||||||||||||||||||||||||||||||||| | |
Sbjct 706 ATGAGTTTCGGGTTATGGAAGGAGATATATTTGTATTTGTTTGATTACTTATTTGTCT-T 764
Query 770 CTTTAGA-G-ATGTTGACTCTGGTGATCGGATAACT-ATCTGTTTGTGTAAGCTTCTTAT 826
| || | ||| |||||||||||||| || |||| |||||||||||||||||||||||
Sbjct 765 AGCT-GATGGATGATGACTCTGGTGATCAGA-AACTCATCTGTTTGTGTAAGCTTCTTAT 822
Query 827 ATATTGATGTGTCATTTCCTTGCTTAGGAAGTGTCTTTTATTAAAGCTA 875
||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct 823 ATATTGATGTGTCATTTCCTTGCTTAGGAAGTGTCTTTTATTAAAACTA 871
> Ahg927208 jgi|Araly1|927208|scaffold_202769.1
Length=497
Score = 667 bits (361), Expect = 0.0
Identities = 431/465 (93%), Gaps = 4/465 (1%)
Strand=Plus/Plus
Query 229 TTGGAAAGAATACAATGGTGGTTCAAGGTAGCACCTACTGTGACATTTGCAAATTCGGCT 288
||||||||||||||||||||||||||||| | || ||||||||| |||||||||||||||
Sbjct 34 TTGGAAAGAATACAATGGTGGTTCAAGGTCGTACTTACTGTGACCTTTGCAAATTCGGCT 93
Query 289 TCGAGACTCCTGAATCCTCCTACTTCATCCCCGGTGCAACGGTGAAGCTATCATGCAAAG 348
||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| ||
Sbjct 94 TCGAGACTCCTGAATCCTCCTACTTCATCCCCGGTGCAACGGTGAAGCTTTCATGCAGAG 153
Query 349 ACAGGAAGACAATGGAAGAGGTTTACACAGACAAAGCTGTATCAGACAAAGAAGGAAAGT 408
|||||||||||||||| ||||||||||| ||| ||||||||||||||||| ||||||| |
Sbjct 154 ACAGGAAGACAATGGAGGAGGTTTACACTGACGAAGCTGTATCAGACAAACAAGGAAATT 213
Query 409 ATAAGTTCATTGTCCACGACGATCACAGAGACCAGATGTGCGATGTTTTGCTTGTGAAAA 468
| |||||||||||||||||||| |||| |||| ||||||||||||||||||| |||||||
Sbjct 214 ACAAGTTCATTGTCCACGACGAGCACAAAGACGAGATGTGCGATGTTTTGCTAGTGAAAA 273
Query 469 GCTCGGAT-AAAACCTGCTCTAAAATCTCCGTTGGACGTGAGAAGTCTCGTGTGATCTTG 527
|| | | | || |||||||||||||||||||||||||||||||||||||||||||||
Sbjct 274 GCGCAG-TCAAGGGATGCTCTAAAATCTCCGTTGGACGTGAGAAGTCTCGTGTGATCTTG 332
Query 528 AACCATTACAGTGGCATTGCCTCGCAGATCAGACATGCTAACAACATGGGATTTGAGAAA 587
|||||||||||||||||||||||||||||||| || ||||||||||||||||| ||||||
Sbjct 333 AACCATTACAGTGGCATTGCCTCGCAGATCAGGCACGCTAACAACATGGGATTCGAGAAA 392
Query 588 GAAGTGAGTGATGTGTTCTGCTCTGCTTTGTTTCAGAAGTATATGGTTGATGAAGATGAG 647
|||||||| |||||||||||||||||| ||| ||| ||||||||||||||||||||||||
Sbjct 393 GAAGTGAGCGATGTGTTCTGCTCTGCTCTGTATCACAAGTATATGGTTGATGAAGATGAG 452
Query 648 GATGATATTAAAAACCATCTCTAATCTCTCTGTTT--AATCTTAT 690
||||||||||||| ||||||||||||||||||||| ||||||||
Sbjct 453 GATGATATTAAAAGCCATCTCTAATCTCTCTGTTTTTAATCTTAT 497
> Ahg909428 jgi|Araly1|909428|Al_scaffold_0002_2509
Length=195
Score = 289 bits (156), Expect = 3e-77
Identities = 179/190 (94%), Gaps = 2/190 (1%)
Strand=Plus/Plus
Query 483 TGCTCTAAAATCTCCGTTGGACGTGAGAAGTCTCGTGTGATCTTGAACCATTACAGTGGC 542
||||||||||||||||||||||| ||||||||||| ||||||||||||||||||||||||
Sbjct 7 TGCTCTAAAATCTCCGTTGGACGCGAGAAGTCTCGCGTGATCTTGAACCATTACAGTGGC 66
Query 543 ATTGCCTCGCAGATCA-GACATGCTAACAACATGGGATTTGAGAAAGAAGTGAGTGATGT 601
|||||||||||||||| | || ||||||||||||||||| |||||||||||||| |||||
Sbjct 67 ATTGCCTCGCAGATCAAG-CACGCTAACAACATGGGATTCGAGAAAGAAGTGAGCGATGT 125
Query 602 GTTCTGCTCTGCTTTGTTTCAGAAGTATATGGTTGATGAAGATGAGGATGATATTAAAAA 661
||||||||||||| ||||||| ||||||||||||||||||||||||||||||||| |||
Sbjct 126 GTTCTGCTCTGCTCTGTTTCACAAGTATATGGTTGATGAAGATGAGGATGATATTCAAAG 185
Query 662 CCATCTCTAA 671
||||||||||
Sbjct 186 CCATCTCTAA 195
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 34806223221
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5