BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT1G78050.1
Length=1553
Score E
Sequences producing significant alignments: (Bits) Value
Ahg316714 jgi|Araly1|316714|fgenesh1_pm.C_scaffold_2001747 1509 0.0
Ahg472450 jgi|Araly1|472450|fgenesh2_kg.1__2404__AT1G22170.1 821 0.0
> Ahg316714 jgi|Araly1|316714|fgenesh1_pm.C_scaffold_2001747
Length=999
Score = 1509 bits (817), Expect = 0.0
Identities = 933/988 (94%), Gaps = 11/988 (1%)
Strand=Plus/Plus
Query 392 ATGGCTACTTCTACGACTATGTCTCATCAAGCGATTGGGTCTGTTGTCTCTCAAAGACCA 451
||||||||| | ||||||||||||||||||||||| |||||| |||||||||| ||||||
Sbjct 1 ATGGCTACTACGACGACTATGTCTCATCAAGCGATCGGGTCTATTGTCTCTCATAGACCA 60
Query 452 TTCAAAGCTTCTCAGTTTCTAAAGGAGCCTTTGAATAATGTACCAATGAAATTCAGACAA 511
|| ||||||||||||||||| |||||||||||| ||||| |||||||||||||||| |
Sbjct 61 TTTAAAGCTTCTCAGTTTCTGAAGGAGCCTTTG---AATGTTCCAATGAAATTCAGACCA 117
Query 512 AAAAGATTCAAGATTGAAGCAACTGCTTCTCAGATATCTGTCGTTGACAACACTTTCTTG 571
|||||||||||||||||||||||||| |||||||| ||| | |||||||||||||||
Sbjct 118 AAAAGATTCAAGATTGAAGCAACTGCGTCTCAGATTTCTCTTGTTGACAACACTTTC--- 174
Query 572 TCTCCGTCTCCTTCCAAGAACAAACCACATGAATCTAAGAAGAAATCAAATGAAGCAGCT 631
| | ||||||||||||||||| ||| || | ||| || |||||||||||||||||||||
Sbjct 175 T-T--GTCTCCTTCCAAGAACAGACCTCAAGTATCCAAAAAGAAATCAAATGAAGCAGCT 231
Query 632 TTGATATTGATTAGGCATGGAGAATCGTTATGGAATGAGAAGAATTTGTTCACGGGTTGT 691
||||||||||||||||||||||| |||||||||||||||||||||||||| |||||||||
Sbjct 232 TTGATATTGATTAGGCATGGAGAGTCGTTATGGAATGAGAAGAATTTGTTTACGGGTTGT 291
Query 692 GTTGATGTGCCATTGACTCAGAAAGGTGTTGGAGAAGCTATTGAAGCTGGGAAGAAGATT 751
||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct 292 GTTGATGTGCCATTGACTCAGAAAGGTGTGGGAGAAGCTATTGAAGCTGGGAAGAAGATT 351
Query 752 AGTAACATTCCTGTAGATTTGATTTTCACTTCTTCTTTAATCCGTGCTCAGATGACTGCA 811
|| ||||| |||||||| ||||| ||||| || ||||||||||||||||||||||| |||
Sbjct 352 AGCAACATACCTGTAGACTTGATCTTCACATCATCTTTAATCCGTGCTCAGATGACCGCA 411
Query 812 ATGCTTGCCATGACTCAGCATCGTCGCAAGAAGGTTCCAATCATCTTGCACAACGAGAGT 871
||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct 412 ATGCTTGCCATGACTCAGCATCGTCGCAAGAAGGTTCCAATCATCTTGCACAATGAGAGT 471
Query 872 GTAAAGGCGAAAACTTGGAGTCATGT-TTTCAGCGAAGAAACTAGAAAACAATCTATCCC 930
|||||||||||||||||||||||||| ||| || ||||||||||||||||||||||||||
Sbjct 472 GTAAAGGCGAAAACTTGGAGTCATGTGTTT-AGTGAAGAAACTAGAAAACAATCTATCCC 530
Query 931 GGTTATAGCGGCTTGGCAACTGAATGAGAGAATGTATGGAGAGTTGCAGGGTTTGAACAA 990
|||||||||||||||||| ||||||||||||||||||||||| |||||||||||||||||
Sbjct 531 GGTTATAGCGGCTTGGCAGCTGAATGAGAGAATGTATGGAGAATTGCAGGGTTTGAACAA 590
Query 991 GAAAGAAACAGCGGAAAGATACGGGACACAACAAGTTCACGAATGGCGCAGGAGTTACGA 1050
||||||||||||||||||||| |||||||||||||||||||||||||| |||||||||||
Sbjct 591 GAAAGAAACAGCGGAAAGATATGGGACACAACAAGTTCACGAATGGCGTAGGAGTTACGA 650
Query 1051 AATTCCTCCTCCGAAAGGCGAGAGCTTGGAGATGTGTGCTGAGAGAGCAGTGGCTTATTT 1110
||||||||| |||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct 651 AATTCCTCCCCCGAAAGGCGAGAGCTTGGAGATGTGCGCTGAGAGAGCAGTGGCTTATTT 710
Query 1111 TGAAGACAATATCAAACCAGAGCTTGCATCTGGAAACAATGTAATGATTGCTGCTCACGG 1170
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 711 TGAAGACAATATCAAACCAGAGCTTGCATCTGGAAACAATGTAATGATTGCTGCTCACGG 770
Query 1171 GAACTCATTGAGATCTATCATTATGTATCTTGACGATTTAACTTCTCAGGAGGTTACAAC 1230
|||||||||| ||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct 771 GAACTCATTGCGATCTATCATTATGTATCTGGACGATTTAACTTCTCAGGAGGTTACAAC 830
Query 1231 TCTAGACCTGTCCACAGGTGTACCATTGCTCTACATCTTCAAAGAAGGCAAGTTCATGAA 1290
||||||| | ||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct 831 TCTAGACTTATCCACGGGTGTACCATTGCTCTACATCTTCAAAGAAGGCAAGTTCATGAA 890
Query 1291 ACGAGGAAGCCCCGTCGGTTCTACTGAAGCTGGTGTCTATGCTTATACAAAGAGATTGGC 1350
|||||||||||| |||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct 891 ACGAGGAAGCCCGGTCGGTCCTACTGAAGCTGGTGTCTATGCTTATACAAAGAGATTGGC 950
Query 1351 ACAATACAGAGAGAAGCTTGATGCGGCG 1378
||||||||||||||||||||||||||||
Sbjct 951 ACAATACAGAGAGAAGCTTGATGCGGCG 978
> Ahg472450 jgi|Araly1|472450|fgenesh2_kg.1__2404__AT1G22170.1
Length=1222
Score = 821 bits (444), Expect = 0.0
Identities = 688/804 (86%), Gaps = 24/804 (3%)
Strand=Plus/Plus
Query 577 GTCTCCTTCCAAGAACAAACCACATG--AA-TCT-AAGAAGAAATCAAATGAAGCAGCTT 632
||||||||||||| || | || | || || ||| | ||||||||||||||||||||||
Sbjct 231 GTCTCCTTCCAAG-ACCATCC-C-TGACAATTCTCTA-AAGAAATCAAATGAAGCAGCTT 286
Query 633 TGATATTGATTAGGCATGGAGAATCGTTATGGAATGAGAAGAAT-TTGTTCACGGGTTGT 691
||||||||||||||||||||||||| || ||||| ||||||||| || || ||||| |||
Sbjct 287 TGATATTGATTAGGCATGGAGAATCTTTGTGGAACGAGAAGAATCTTTTT-ACGGGCTGT 345
Query 692 GTTGATGTGCCATTGACTCAGAAAGGTGTTGGAGAAGCTATTGAAGCTGGGAAGAAGATT 751
|||||||||||||||||| |||||||||||| ||||||||||||||| ||||||| ||||
Sbjct 346 GTTGATGTGCCATTGACTGAGAAAGGTGTTGAAGAAGCTATTGAAGCAGGGAAGAGGATT 405
Query 752 AGTAACATTCCTGTAGAT-TTGAT-TTTCACTTCTTCTTTAATCCGTGCTCAGATGACTG 809
|||||||| ||||| ||| || || ||| || || ||||| || ||||||||||||||||
Sbjct 406 AGTAACATACCTGTTGATGTT-ATCTTT-ACATCGTCTTTGATTCGTGCTCAGATGACTG 463
Query 810 CAATGCTTGCCATGACTCAGCATCGTCGCAAGAAGGTTCCAATCATCTTGCACAACGAGA 869
|||||||||| |||| ||| || ||||| ||||||||||| || |||||||| | || |
Sbjct 464 CAATGCTTGCTATGATTCAACACCGTCGTAAGAAGGTTCCGATAATCTTGCATGATGAAA 523
Query 870 GTGTAA-AGGCGAAAACTTGGAGTCATGTTTTCAGCGAAGAAACTAGAAAAC-AATCTAT 927
| | || ||||||||||||||||||| |||||||| || || |||| ||||| |||| ||
Sbjct 524 GCG-AACAGGCGAAAACTTGGAGTCAAGTTTTCAGTGATGAGACTA-AAAACCAATCCAT 581
Query 928 CCCGGTTATAGCGGCTTGGCAACTGAATGAGAGAATGTATGGAGAGTTGCAGGGT-TTGA 986
|| || ||| | |||||||| || ||||| |||||||||||||| ||||| ||| || |
Sbjct 582 TCCTGTCATACCCGCTTGGCAGCTTAATGAAAGAATGTATGGAGAATTGCAAGGTCTT-A 640
Query 987 ACAAGAAAGAAACAGCGGAAAGATACGGGACACAACAAGTTCACGAATGGCGCAGGAGTT 1046
||||| |||||||||||||||||||||||| ||| ||||||||||||||||| |||||||
Sbjct 641 ACAAGCAAGAAACAGCGGAAAGATACGGGAAACAGCAAGTTCACGAATGGCGTAGGAGTT 700
Query 1047 ACGAAATTCCTCCTCCGAAAGGCGAGAGCTTGGAGATGTGTGCTGAGAGAGCAGTGGCTT 1106
| || ||||||||||| ||||||||||||||||||||||||||||| |||||||||||||
Sbjct 701 ATGACATTCCTCCTCCCAAAGGCGAGAGCTTGGAGATGTGTGCTGAAAGAGCAGTGGCTT 760
Query 1107 ATTTTGAAGACAATATCAAACCAGAGCTTGCATCTGGAAACAATGTAATGATTGCTGCTC 1166
||||| | ||||||||| ||||| |||||||| ||||||| || |||||||| |||||||
Sbjct 761 ATTTTCAGGACAATATCGAACCAAAGCTTGCAGCTGGAAAGAACGTAATGATAGCTGCTC 820
Query 1167 ACGGGAACTCATTGAGATCTATCATTATGTATCTTGACGATTTAACTT-CTCAGGAGGTT 1225
|||||||||| || | |||||||| |||||||||||| | || |||| | ||||||||
Sbjct 821 ACGGGAACTCGCTGCGGTCTATCATAATGTATCTTGACAAATTGACTTGC-CAGGAGGTG 879
Query 1226 ACAACTCTAGACCTGTCCACAGGTGTACCA-TTGCTCTACATCTTCAAAGAAGGCAAGTT 1284
| || |||||| || || || || |||| || |||||||| |||||||||||||| ||
Sbjct 880 ATAAGTCTAGAGCTATCGACCGGAATACCTCTT-CTCTACATATTCAAAGAAGGCAAATT 938
Query 1285 CATGAAACGAGGAAGCCCCGTCGGTTCTACTGAAGCTGGTGTCTATGCTTATACAAAGAG 1344
|||||| || |||||||| || ||| | || ||||| ||||||||||||||||| |||||
Sbjct 939 CATGAAGCGGGGAAGCCCGGTTGGTCCAACAGAAGCCGGTGTCTATGCTTATACCAAGAG 998
Query 1345 ATTGGCACAATACAGAGAGAAGCT 1368
|||||| ||||||||| |||||||
Sbjct 999 ATTGGCTCAATACAGACAGAAGCT 1022
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 58163804115
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5