BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT1G78060.1
Length=2477
Score E
Sequences producing significant alignments: (Bits) Value
Ahg927211 jgi|Araly1|927211|scaffold_202772.1 3528 0.0
> Ahg927211 jgi|Araly1|927211|scaffold_202772.1
Length=2341
Score = 3528 bits (1910), Expect = 0.0
Identities = 2207/2351 (94%), Gaps = 18/2351 (1%)
Strand=Plus/Plus
Query 38 TTTTCCGCATTTCGAAGCCATGGCTAAACAACTGCTTCTTCTTCTCCTTCTCTTCATCGT 97
||||||||||||||||||||||||| | |||||||||||||||||||||||||||| |
Sbjct 2 TTTTCCGCATTTCGAAGCCATGGCT--A-AACTGCTTCTTCTTCTCCTTCTCTTCATATT 58
Query 98 CCACGGCGTTGAATCAGCTCCTCCGCCGCACTCCTGTGACCCTTCAAATCCAACCACGAA 157
||| |||| ||||||||||||||||||||||||||||||||||| ||||||||||| ||
Sbjct 59 TCACAGCGTCGAATCAGCTCCTCCGCCGCACTCCTGTGACCCTTCGAATCCAACCACCAA 118
Query 158 ACTCTACCAGTTCTGCCGCACTGACCTCCCAATT-GGCAAGCGAGCGCGTGATCTCGTCT 216
|||||||||||||||||||||||||||||||||| | ||| |||||||||||||||||||
Sbjct 119 ACTCTACCAGTTCTGCCGCACTGACCTCCCAATTAGCCAA-CGAGCGCGTGATCTCGTCT 177
Query 217 CGAGGCTAACCATAGACGAGAAGATCTCGCAGCTGGTGAATACAGCTCCAGGGATACCGC 276
||||||||| ||| ||||||||||| |||||| ||| ||| |||||||| |||||||| |
Sbjct 178 CGAGGCTAAACATTGACGAGAAGATATCGCAGTTGGGGAACACAGCTCCGGGGATACCAC 237
Query 277 GTCTTGGAGTTCCGGCGTACGAATGGTGGTCAGAAGCTTTACACGGCGTAGCCTACGCCG 336
|||||||||||||||||||||| |||||||| || |||||||||||||||||||||||||
Sbjct 238 GTCTTGGAGTTCCGGCGTACGAGTGGTGGTCGGAGGCTTTACACGGCGTAGCCTACGCCG 297
Query 337 GTCCAGGAATCCGGTTTAACGGAACGGTTAAAGCTGCTACCAGCTTTCCTCAAGTCATCT 396
|||||||||||||||||||||||||||||||||| || || |||||||||||||||||||
Sbjct 298 GTCCAGGAATCCGGTTTAACGGAACGGTTAAAGCAGCCACTAGCTTTCCTCAAGTCATCT 357
Query 397 TGACCGCTGCTTCATTCGACTCCTATGAATGGTTCCGCATTGCTCAAGTTATAGGAAAGG 456
| ||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 358 TAACCGCTGCTTCCTTCGACTCCTATGAATGGTTCCGCATTGCTCAAGTTATAGGAAAGG 417
Query 457 AAGCAAGAGGAGTGTACAACGCAGGGCAAGCG-AATGGAATGACATTTTGGGCACCAAAC 515
|||||||||||||||||||||||||||||||| || ||| ||||||||||||||||||||
Sbjct 418 AAGCAAGAGGAGTGTACAACGCAGGGCAAGCGCAAGGGA-TGACATTTTGGGCACCAAAC 476
Query 516 ATTAACATATTTAGAGATCCACGGTGGGGAAGAGGCCAAGAAACTCCCGGCGAGGATCCG 575
||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct 477 ATTAACATATTTAGAGATCCACGGTGGGGAAGAGGCCAAGAGACTCCCGGCGAGGATCCG 536
Query 576 ATGATGACCGGAACTTACGCGGTGGCTTACGTTAGAGGACTACAAGGTGACTCTTTTGAC 635
| ||||||||||||||||||||||||||||| |||||| ||||||| |||||||| |||
Sbjct 537 CTAATGACCGGAACTTACGCGGTGGCTTACGTCAGAGGATTACAAGGCGACTCTTTCGAC 596
Query 636 GGTCGGAAAACACTCTCCAATCATCTCCAAGCCTCCGCTTGTTGTAAGCATTTTACAGCG 695
|||||||||||||| |||||||||||||||||||||||||||||||||||||| || |||
Sbjct 597 GGTCGGAAAACACTATCCAATCATCTCCAAGCCTCCGCTTGTTGTAAGCATTTCACGGCG 656
Query 696 TACGATCTTGATCGTTGGAAGGGTATTACTCGCTACGTCTTCAATGCTCAGGTGAGTTTG 755
|||||||||||||||||||| ||||| |||||||||||||| ||||||||||||||||||
Sbjct 657 TACGATCTTGATCGTTGGAAAGGTATCACTCGCTACGTCTTTAATGCTCAGGTGAGTTTG 716
Query 756 GCTGACTTGGCGGAGACGTACCAACCACCGTTCAAGAAATGCATAGAAGAAGGTCGAGCC 815
||||||||||||||||||||||||||||| ||||||||||||||||||||||| ||||||
Sbjct 717 GCTGACTTGGCGGAGACGTACCAACCACCATTCAAGAAATGCATAGAAGAAGGCCGAGCC 776
Query 816 AGTGGCATCATGTGTGCTTATAACCGAGTCAACGGCATTCCTTCTTGCGCTGACCCGAAT 875
||||||||||||||||||||||||||||||||||||||||| ||||||||||| || |||
Sbjct 777 AGTGGCATCATGTGTGCTTATAACCGAGTCAACGGCATTCCCTCTTGCGCTGATCCAAAT 836
Query 876 CTTTTGACTCGAACCGCTCGTGGTCAATGG-GCTTTCCGCGGATACATTACTTCAGATTG 934
|| |||||||||||||||||||| | ||| | |||| ||||||||||||||||||||||
Sbjct 837 CTCTTGACTCGAACCGCTCGTGGGCTCTGGCG-TTTCAGCGGATACATTACTTCAGATTG 895
Query 935 TGACGCAGTCTCAATCATCTACGATGCTCAAGGCTACGCTAAAAGCCCTGAAGACGCTGT 994
||||||||||||||||||| ||||||||||||||||||| |||| |||||||||||| ||
Sbjct 896 TGACGCAGTCTCAATCATCCACGATGCTCAAGGCTACGCCAAAACCCCTGAAGACGCCGT 955
Query 995 TGCTGATGTCCTCAAAGCTGGCATGGACGTAAACTGTGGATCATACTTACAAAAACACAC 1054
|||||||||||||||||| |||||||||||||||||||||||||||||||||||||| ||
Sbjct 956 TGCTGATGTCCTCAAAGCCGGCATGGACGTAAACTGTGGATCATACTTACAAAAACATAC 1015
Query 1055 CAAATCAGCTCTTCAACAGAAGAAAGTGTCTGAAACAGACATTGACAGAGCTCTACTCAA 1114
|||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct 1016 CAAATCAGCTCTTCAACAGAAGAAAGTGTCTGAAACAGACATTGACAGAGCTCTGCTCAA 1075
Query 1115 TCTTTTCTCTGTTAGGATTCGTCTCGGTCTCTTTAACGGCGATCCAACCAAATTACCTTA 1174
||||||| ||||||||||||||||||||||||| ||||||||||||| |||| |||||||
Sbjct 1076 TCTTTTCGCTGTTAGGATTCGTCTCGGTCTCTTCAACGGCGATCCAAACAAACTACCTTA 1135
Query 1175 CGGAAACATTAGTCCTAACGAAGTTTGTTCACCGGCTCATCAAGCTTTAGCACTTGATGC 1234
||||||||||||||||||||| |||||||| ||| ||||||||||||||||||| || ||
Sbjct 1136 CGGAAACATTAGTCCTAACGATGTTTGTTCTCCGTCTCATCAAGCTTTAGCACTCGAAGC 1195
Query 1235 TGCTCGTAATGGTATAGTTCTCTTGAAAAACAATCTTAAACTCCTTCCTTTCTCCAAACG 1294
||||||||| ||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct 1196 TGCTCGTAACGGTATAGTTCTCTTGAAGAACAATCTTAAACTCCTTCCTTTCTCCAAACG 1255
Query 1295 CAGCGTTTCGTCTTTAGCTGTGATCGGTCCAAACGCTCACGTCGTTAAAACGCTTCTTGG 1354
||||||||||||||||||||| |||||||||||||||||||||| |||||||||||||||
Sbjct 1256 CAGCGTTTCGTCTTTAGCTGTAATCGGTCCAAACGCTCACGTCGCTAAAACGCTTCTTGG 1315
Query 1355 AAACTACGCTGGTCCGCCTTGTAAGACTGTGACTCCTCTTGATGCCTTACGTAGTTATGT 1414
|||||| ||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct 1316 AAACTATGCTGGTCCGCCTTGTAAGACTGTGACTCCCCTTGATGCCTTACGTAGTTATGT 1375
Query 1415 CAAAAACGCTGTTTACCACCAA-GGATGTGATTCCGTGGCTTGCTCTAACGCTGCGATTG 1473
||||||||||||||||||| || || ||||||||||||||||||||||||||||||||||
Sbjct 1376 CAAAAACGCTGTTTACCAC-AATGGTTGTGATTCCGTGGCTTGCTCTAACGCTGCGATTG 1434
Query 1474 ATCAAGCGGTTGCAATTGCAAAAAATGCTGATCATGTGGTTTTGATTATGGGACTAGACC 1533
|||||||||||||||| || | |||||||||||||||||||||||| |||||||||||||
Sbjct 1435 ATCAAGCGGTTGCAATCGCGAGAAATGCTGATCATGTGGTTTTGATCATGGGACTAGACC 1494
Query 1534 AGACTCAAGAGAAAGAAGATTTTGACCGTGTGGACCTTAGTCTTCCCGGGAAGCAACAAG 1593
|||||||||||||||||||| | |||||||||||||||||||||||||||||||||||||
Sbjct 1495 AGACTCAAGAGAAAGAAGATATGGACCGTGTGGACCTTAGTCTTCCCGGGAAGCAACAAG 1554
Query 1594 AACTCATAACAAGCGTTGCAAATGCTGCAAAGAAACCGGTGGTCCTTGTTCTGATATGTG 1653
| ||||| ||||||||||| ||||||||||||||||| ||||| ||||||||||||||||
Sbjct 1555 AGCTCATTACAAGCGTTGCGAATGCTGCAAAGAAACCTGTGGTTCTTGTTCTGATATGTG 1614
Query 1654 GCGGTCCTGTCGATATTTCATTTGCTGCGAATAACAATAAGATAGGAAGCATTATATGGG 1713
|||||||||||||||| ||||||||| |||||||| ||||||| ||||||||||| ||||
Sbjct 1615 GCGGTCCTGTCGATATCTCATTTGCTACGAATAACGATAAGATCGGAAGCATTATGTGGG 1674
Query 1714 CTGGTTATCCTGGAGAAGCTGGAGGGATTGCTATTTCTGAAATCATATTCGGAGATCACA 1773
||||||||||||||||||| |||||||||||| || |||||||||| |||||||||||||
Sbjct 1675 CTGGTTATCCTGGAGAAGCCGGAGGGATTGCTCTTGCTGAAATCATCTTCGGAGATCACA 1734
Query 1774 ATCCCGGAGGGAGATTACCAGTGACATGGTATCCTCAGAGCTTTGTGAATATACAGATGA 1833
|||| ||||| |||||||||||||| |||||||||||||||||||||||| |||||||||
Sbjct 1735 ATCCGGGAGGAAGATTACCAGTGACTTGGTATCCTCAGAGCTTTGTGAATGTACAGATGA 1794
Query 1834 CAGACATGAGAATGCGGTCTGCAACTGGATATCCTGGAAGGACTTACAAATTCTATAAAG 1893
||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct 1795 CAGACATGAGAATGCGGTCTGCAACTGGATATCCTGGAAGGACTTACAAATTCTACAAAG 1854
Query 1894 GACCTAAAGTGTATGAGTTTGGTCATGGTCTTAGCTACTCAGCTTACTCTTACCGGTTCA 1953
| |||||||||| ||||||||| |||||||||||||||||| ||||||| ||||||||||
Sbjct 1855 GCCCTAAAGTGTTTGAGTTTGGACATGGTCTTAGCTACTCAACTTACTCATACCGGTTCA 1914
Query 1954 AGACTCTGGCTGAAACCAATCTCTACTTGAACCAATCTAAAGCTCAAAC-CAACTCGGAC 2012
||||||||| || |||||||||||||||||||||||||||||||||| | ||||||||||
Sbjct 1915 AGACTCTGGGTGCAACCAATCTCTACTTGAACCAATCTAAAGCTCAA-CTCAACTCGGAC 1973
Query 2013 TCTGTTCGATACACTCTGGTTTCGGAAATGGGGAAAGAAGGTTGCGATGTAGCCAAGACT 2072
|||||||| |||||||||||||||||||||||| ||||||||||| | |||||||||||
Sbjct 1974 TCTGTTCGGTACACTCTGGTTTCGGAAATGGGGGAAGAAGGTTGCAACATAGCCAAGACT 2033
Query 2073 AAGGTCACTGT-AGAGGTGGAAAATCAAGGGGAGATGGCAGGGAAA-CATCCGGTGCTGA 2130
||||| | ||| | || |||| |||||||| |||||||| |||||| |||||||||||||
Sbjct 2034 AAGGTTATTGTTACAG-TGGAGAATCAAGGTGAGATGGC-GGGAAAACATCCGGTGCTGA 2091
Query 2131 TGTTTGCGAGGCACGAGCGAGGAGGAGAAGACGGTAAACGAGCAGAGAAACAGCTTGTTG 2190
||||||||||||||||| |||||||||||||||| ||||| ||||||||||| ||||| |
Sbjct 2092 TGTTTGCGAGGCACGAGAGAGGAGGAGAAGACGGGAAACGCGCAGAGAAACAACTTGTCG 2151
Query 2191 GGTTTAAGAGCATTGTGTTAAGCAATGGAGAGAAAGCAGAGATGGAGTTTGAGATTGGTC 2250
||||||||||||||||| |||| |||||||||||||| |||||||| |||||||||||||
Sbjct 2152 GGTTTAAGAGCATTGTGCTAAGTAATGGAGAGAAAGCGGAGATGGAATTTGAGATTGGTC 2211
Query 2251 TTTGTGAGCATTTGAGCAGAGCTAATGAATTTGGAGTAATGGTTCTTGAAGAAGGAAAGT 2310
||||||||||||||||||||||||||||| ||||||| |||||| ||||||||||||| |
Sbjct 2212 TTTGTGAGCATTTGAGCAGAGCTAATGAAGTTGGAGTTATGGTTGTTGAAGAAGGAAAAT 2271
Query 2311 ATTTCTTAACCGTTGGAGATTCAGAGCTCCCTCTTATTGTTAATGTCTGAATCTGAAAAA 2370
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2272 ATTTCTTAACCGTTGGAGATTCAGAGCTCCCTCTTATTGTTAATGTCTGAATCTGAAAA- 2330
Query 2371 CATAAACAAGA 2381
|||||||||||
Sbjct 2331 CATAAACAAGA 2341
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 93359190495
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5