BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT1G78080.1
Length=1825
Score E
Sequences producing significant alignments: (Bits) Value
Ahg476975 jgi|Araly1|476975|fgenesh2_kg.2__2105__AT1G78080.1 1700 0.0
Ahg472454 jgi|Araly1|472454|fgenesh2_kg.1__2408__AT1G22190.1 243 5e-63
> Ahg476975 jgi|Araly1|476975|fgenesh2_kg.2__2105__AT1G78080.1
Length=1370
Score = 1700 bits (920), Expect = 0.0
Identities = 1257/1407 (89%), Gaps = 73/1407 (5%)
Strand=Plus/Plus
Query 171 CTTCTGTTAATCATCTGTCTTTCaaaaagaaagaaaaaagaaaaaTTCGATTTCTGGGTT 230
||||||| |||||||||||||||||||||||| | ||||| |||||||||||||||||||
Sbjct 1 CTTCTGTGAATCATCTGTCTTTCAAAAAGAAATAGAAAAG-AAAATTCGATTTCTGGGTT 59
Query 231 TGTTTTTGTCATACAGaaaaaaaTCAAGCTTATGAAtttgtgtttaattttttgttttaa 290
|||||||||||||||| |||||||||||||||||||||||||| |||||||||||||||
Sbjct 60 TGTTTTTGTCATACAG--AAAAATCAAGCTTATGAATTTGTGTTCAATTTTTTGTTTTAA 117
Query 291 tttgaaaggcaggttttttcagaacgagatcgttttttcaaatttcttctgatttta-cc 349
|||||||||||||| |||||||||||||||| ||||||||||||||||||||||||| ||
Sbjct 118 TTTGAAAGGCAGGTATTTTCAGAACGAGATCTTTTTTTCAAATTTCTTCTGATTTTACCC 177
Query 350 tcttttt-ttcttcttagattttAGTGAATCGAGGGTGAAATTTTTGATTCCCTCTTTTC 408
| ||||| |||||||||||||||||| || |||||||| |||||||||||||||||||||
Sbjct 178 TTTTTTTCTTCTTCTTAGATTTTAGTAAACCGAGGGTG-AATTTTTGATTCCCTCTTTTC 236
Query 409 GGATCTACACAGAGGTTGCTTATTTCAAACCTTTTAGATCCA------tt-ttttt-tt- 459
||||||| |||||||||||||||||||||||||||||||||| || ||||| ||
Sbjct 237 GGATCTA-ACAGAGGTTGCTTATTTCAAACCTTTTAGATCCATTTTTTTTATTTTTCTTG 295
Query 460 AATTTTCTCGGAAAAATCCCTGtttctttacttttttataagtctcagg-ttcaattttt 518
||||||||||| ||||||| ||||||||||||||||| | | || || ||||| |
Sbjct 296 AATTTTCTCGG-AAAATCCTTGTTTCTTTACTTTTTT-T---TTTC-GGATTCAA--ATG 347
Query 519 tcggattcaaatttttattt-taAATGGCAGCT-GCTATGAA-TTTGTACACTTGTAGCA 575
| | | | | | |||| || | | || | || | ||| || | || | | ||
Sbjct 348 GCAGCTGC---TATGAATTTGTACA--GTAG-TAGC-A-GAACGTT-T-CA--AGCATCA 395
Query 576 GA-TCGTTTCAAGACT-CTGGTGGTGAACTCATGGACGCGCTTGTACCTTTTATCAAAAG 633
|| |||||| | | ||||||||||||||||||||||||||||||||||||||||||
Sbjct 396 GATTCGTTTGGTG-GTAGTGGTGGTGAACTCATGGACGCGCTTGTACCTTTTATCAAAAG 454
Query 634 CGTTTCCGAttctccttcttcttcttctgcagcgtctgcgtctgcgtttcttcacccctc 693
|||||||||||| |||||||| | ||||| | ||| | || || |||| | ||
Sbjct 455 CGTTTCCGATTCCCCTTCTTCCGCGTCTGC-GTTTCTTCATC-CCGCAGCTTC-TGCGTC 511
Query 694 tgcgttttctctcCCTCCTCTCCCCGGTTATTACCCGGATTCAACGTTCTTGACCCAACC 753
|||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 512 TGCGTTTTCTCTTCCTCCTCTCCCCGGTTATTACCCGGATTCAACGTTCTTGACCCAACC 571
Query 754 GTTTTCATACGGGTCGGATCTTCAACAAACCGGGTCATTAATCGGACTCAACAACCTCTC 813
||||||||||||||||||||||||||||||||| || |||||||| ||||||||||||||
Sbjct 572 GTTTTCATACGGGTCGGATCTTCAACAAACCGGATCGTTAATCGGGCTCAACAACCTCTC 631
Query 814 TTCTTCTCAGATCCACCAGATCCAGTCTCAGATCCATCATCCTCTTCCTCCGACGCATCA 873
||||||||| |||||||||||||| |||||||||||||||||||| ||||||||||||
Sbjct 632 TTCTTCTCAAATCCACCAGATCCAATCTCAGATCCATCATCCTCTACCTCCGACGCAT-- 689
Query 874 CAACAACAACAACTCTTTCTCGAATCTTCTCAGCCCAAAGCCGTTACTGATGAAGCAATC 933
| |||||||| | |||||||||||||||||||||||||||||||||| |||||||||||
Sbjct 690 C-ACAACAAC-A--CTTTCTCGAATCTTCTCAGCCCAAAGCCGTTACTCATGAAGCAATC 745
Query 934 TGGAGTCGCTGGATCTTGTTTCGCTTACGGTTCAGGTGTTCCTTCGAAGCCGACGAAGCT 993
||||||||| ||||||||||||||||||||||||||||||||| | ||||||||||||||
Sbjct 746 TGGAGTCGCCGGATCTTGTTTCGCTTACGGTTCAGGTGTTCCTCCCAAGCCGACGAAGCT 805
Query 994 TTACAGAGGTGTGAGGCAACGTCACTGGGGAAAATGGGTGGCTGAGATCCGTTTGCCGAG 1053
|||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct 806 TTACAGAGGTGTGAGGCAACGTCACTGGGGTAAATGGGTGGCTGAGATCCGTTTGCCGAG 865
Query 1054 AAATCGGACTCGTCTCTGGCTTGGGACTTTTGACACGGCGGAGGAAGCTGCGTTGGCCTA 1113
|||||||||||||||||||||||||| |||||||||||||||||||||||| |||||||
Sbjct 866 GAATCGGACTCGTCTCTGGCTTGGGACCTTTGACACGGCGGAGGAAGCTGCGCTGGCCTA 925
Query 1114 TGATAAGGCGGCGTACAAGCTGCGCGGCGATTTCGCCCGGCTTAACTTCCCTAACCTACG 1173
||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct 926 TGATAAGGCGGCGTATAAGCTGCGCGGCGATTTCGCCCGGCTTAACTTCCCTAACCTACG 985
Query 1174 TCATAACGGATCTCACATCGGAGGCGATTTCGGTGAATATAAACCTCTTCACTCCTCAGT 1233
||||||||||||||||||||||||||||||||||||||| |||||||||||||| |||||
Sbjct 986 TCATAACGGATCTCACATCGGAGGCGATTTCGGTGAATACAAACCTCTTCACTCTTCAGT 1045
Query 1234 CGACGCTAAGCTTGAAGCTATTTGTAAAAGCATGGCGGAGACTCAGAAACAGGACAAATC 1293
|||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| |
Sbjct 1046 CGACGCTAAGCTTGAAGCTATTTGTAAAAGCATGGCGGAGACTCAGAAACAGGAGAAACC 1105
Query 1294 GACGAAATCATCGAAGAAACGTG----A--G---A---AGAAG--G-TTTCGTCGCCAGA 1338
||||||||||||||||||||||| | | | ||||| | |||||||||||||
Sbjct 1106 GACGAAATCATCGAAGAAACGTGGTTCATCGGTGACGGAGAAGAAGGTTTCGTCGCCAGA 1165
Query 1339 TCTATCGGAGAAAGT-G--AAGGCGGAGGAGAATTCGGTTTCGATCGG-TGGATCTCCAC 1394
|||| ||||||||| | ||||||||||| || ||||| |||| | | |||||||||||
Sbjct 1166 TCTAACGGAGAAAGAAGTCAAGGCGGAGGAAAAATCGGTCTCGA-CTGCTGGATCTCCAC 1224
Query 1395 CGGTGACGGAGTTTGAAGAGTCCACCGCTGGATCTTCGCCGTTGTCGGACTTGACGTTCG 1454
| |||||||||||||||||||||||||| |||||||||||||||||||||||||| ||||
Sbjct 1225 CAGTGACGGAGTTTGAAGAGTCCACCGCCGGATCTTCGCCGTTGTCGGACTTGACCTTCG 1284
Query 1455 CTGACCCGGAGGAGCCGCCGCAGTGGAACGAGACGTTCTCGTTGGAGAAGTATCCGTCGT 1514
|||| |||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct 1285 CTGATCCGGAGGAGCCGCCGCAGTGGAACGAGACGTTCTCGTTGGAGAAGTTTCCGTCGT 1344
Query 1515 ACGAGATCGATTGGGATTCGATTCTAG 1541
||||||||||||||||||||||| |||
Sbjct 1345 ACGAGATCGATTGGGATTCGATT-TAG 1370
> Ahg472454 jgi|Araly1|472454|fgenesh2_kg.1__2408__AT1G22190.1
Length=1386
Score = 243 bits (131), Expect = 5e-63
Identities = 177/200 (89%), Gaps = 0/200 (0%)
Strand=Plus/Plus
Query 983 CCGACGAAGCTTTACAGAGGTGTGAGGCAACGTCACTGGGGAAAATGGGTGGCTGAGATC 1042
||||||||||| ||| |||| ||||| ||||||||||||||||||||||||||||||||
Sbjct 670 CCGACGAAGCTATACCGAGGAGTGAGACAACGTCACTGGGGAAAATGGGTGGCTGAGATT 729
Query 1043 CGTTTGCCGAGAAATCGGACTCGTCTCTGGCTTGGGACTTTTGACACGGCGGAGGAAGCT 1102
||||| ||||| ||||| ||||| || ||||| || || || || |||||||||||||||
Sbjct 730 CGTTTACCGAGGAATCGAACTCGGCTTTGGCTCGGAACATTCGATACGGCGGAGGAAGCT 789
Query 1103 GCGTTGGCCTATGATAAGGCGGCGTACAAGCTGCGCGGCGATTTCGCCCGGCTTAACTTC 1162
|| || |||||||| ||||||||||| ||||||||||||||||||||| ||||||| |||
Sbjct 790 GCATTAGCCTATGACAAGGCGGCGTATAAGCTGCGCGGCGATTTCGCCAGGCTTAATTTC 849
Query 1163 CCTAACCTACGTCATAACGG 1182
||||| || |||||||||||
Sbjct 850 CCTAATCTCCGTCATAACGG 869
Score = 100 bits (54), Expect = 3e-20
Identities = 101/121 (83%), Gaps = 13/121 (11%)
Strand=Plus/Plus
Query 1427 TCTTCGCCGTTGTCGGACT-TGACGTTCGCTG--AC-CCGGAGGAG---CCGCCGCAGTG 1479
||||||||||||||||| | ||||||| | || || ||||||| | ||||| |||
Sbjct 1081 TCTTCGCCGTTGTCGGA-TCTGACGTTTGGTGATACGGAGGAGGAGATTCAGCCGCCGTG 1139
Query 1480 GAACGAGACGTTCT-CGTTGGAGAAGTATCCGTCGTACGAGATCGATTGGGATTCGATTC 1538
||| || ||| | |||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1140 GAA--TGA-GTT-TGCGTTGGAGAAGTATCCGTCGTACGAGATCGATTGGGATTCGATTC 1195
Query 1539 T 1539
|
Sbjct 1196 T 1196
Score = 89.8 bits (48), Expect = 7e-17
Identities = 81/96 (84%), Gaps = 5/96 (5%)
Strand=Plus/Plus
Query 1208 GAATATAAACCTCTTCACTCCTCAGTCGACGCTAAGCTTGAAGCTATTTGT-AAAAGCAT 1266
|| ||| |||||||||| || |||||||||||||||||||||||||||||| |||| | |
Sbjct 871 GAGTATCAACCTCTTCAATCATCAGTCGACGCTAAGCTTGAAGCTATTTGTCAAAA-CTT 929
Query 1267 GGC-G-GA-GACTCAGAAACAGGACAAATCGACGAA 1299
|| | || |||||| ||||||| ||||| |||||
Sbjct 930 AGCTGAGATGACTCAAAAACAGGGGAAATCAACGAA 965
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 68524350755
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5