BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT1G78090.1
Length=1400
Score E
Sequences producing significant alignments: (Bits) Value
Ahg476976 jgi|Araly1|476976|fgenesh2_kg.2__2106__AT1G78090.1 2037 0.0
> Ahg476976 jgi|Araly1|476976|fgenesh2_kg.2__2106__AT1G78090.1
Length=1344
Score = 2037 bits (1103), Expect = 0.0
Identities = 1283/1365 (94%), Gaps = 32/1365 (2%)
Strand=Plus/Plus
Query 15 tctctctcaacatctctctctttctctgtcttctctctgtctcAACGAGAATATGACTAA 74
|||||||| |||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct 1 TCTCTCTCTACATCTCTTTCTTTCTCTGTCTTCTCTCTGTCTCAACGAGAATATGACTAA 60
Query 75 CCAGAATGTCATCGTTTCCGACAGGAAACCCATCTTGGGTTTGAAAACCATCACTGTCTC 134
|||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct 61 CCAGAATGTCATCGTTTCCGACAGAAAACCCATCTTGGGTTTGAAAACCATCACTGTCTC 120
Query 135 TGTCTCTAACTCTCCTCTGTTCTCTAATTCCTTTCCCACTTACTTTAACTTCCCTCGTCG 194
|||| ||||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct 121 TGTCACTAACTCTCCTCTGTTCTCTAATTCATTTCCCACTTACTTTAACTTCCCTCGTCG 180
Query 195 AAAGCTCTTGAAACTTCTTGAAGCAG-C--C--G-AC-A-AA-AACAACTTAGTTGTTGC 245
|||| | |||||||||||||||| || | | | || | || |||||||||||||||||
Sbjct 181 AAAGTTGTTGAAACTTCTTGAAGTAGCCGACAAGAACAACAACAACAACTTAGTTGTTGC 240
Query 246 TCCAAAGATTACGTCTATGATCGATTCCATGCGTGATTCTTCCCCTACACGTCTCAGATC 305
|||||||||||| ||| |||||| ||||||||||||||||||||||||||||||||||||
Sbjct 241 TCCAAAGATTACATCTTTGATCGTTTCCATGCGTGATTCTTCCCCTACACGTCTCAGATC 300
Query 306 CTCTTCCTATGACTCTGTTTCAGATAACGACGACAAAACATCTTGGATCGTTCGTTTTCC 365
||||||| |||||||||| ||||||| ||||||||||||||||||||||||| | |||||
Sbjct 301 CTCTTCCCATGACTCTGTCTCAGATATCGACGACAAAACATCTTGGATCGTTAGATTTCC 360
Query 366 TTCGGCTTTAAATATGTTTGATGAGATTGTGAATGCTGCGAAAGGGAAACAGATTGTCAT 425
||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct 361 TTCGGCTTTAAATATGTTTGATGAGATTGTGAATGCTGCGAAAGGGAAACAGATTGTTAT 420
Query 426 GTTTCTTGATTACGACGGAACTCTTTCTCCCATAGTTGAAGATCCCGACAAAGCTTTCAT 485
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 421 GTTTCTTGATTACGACGGAACTCTTTCTCCCATAGTTGAAGATCCCGACAAAGCTTTCAT 480
Query 486 AACCCATGAGATGAGAGAAGTCGTAAAAGACGTGGCTTCGAATTTCCCGACTGCTATTGT 545
||||||||||||| |||| || ||||||||||||||||||||||| ||||||||||| ||
Sbjct 481 AACCCATGAGATGCGAGATGTTGTAAAAGACGTGGCTTCGAATTTTCCGACTGCTATCGT 540
Query 546 CACCGGGAGATCCATTGAGAAGGTTCGTAGTTTTGTCCAAGTAAACGAGATTTACTACGC 605
|||||| |||||||| || |||||||||||||||||| ||||||||||||||||||||||
Sbjct 541 CACCGGAAGATCCATAGATAAGGTTCGTAGTTTTGTCAAAGTAAACGAGATTTACTACGC 600
Query 606 CGGAAGCCACGGCATGGACATTGAAGGTCCGACCAACGAAAATAGTAACGGCCAGAGTAA 665
|||||||||||||||||||||| ||||||||||||||||||||||| |||||||||||||
Sbjct 601 CGGAAGCCACGGCATGGACATTAAAGGTCCGACCAACGAAAATAGTTACGGCCAGAGTAA 660
Query 666 TGAAAGAGTGCTATTCCAACCTGCTCGTGAATTTTTACCGATGATCGAGAAGGTGGTTAA 725
|||||||||||||||||||||||| |||||||||||||| ||||||||||||||||||||
Sbjct 661 TGAAAGAGTGCTATTCCAACCTGCACGTGAATTTTTACCAATGATCGAGAAGGTGGTTAA 720
Query 726 TATTTTAGAGGAAAAAACAAAATGGATCCCTGGGGCTATGGTGGAGAACAACAAGTTTTG 785
||||| |||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct 721 GATTTTGGAGGAAAAGACAAAATGGATCCCTGGGGCTATGGTGGAGAACAACAAGTTTTG 780
Query 786 TCTGTCCGTACATTTTCGACGTGTTGATGAGAAGAGATGGCCTGCATTAGCTGAAGTAGT 845
||| |||||||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct 781 TCTATCCGTACATTTTCGACGTGTTGATGAGAAGAGATGGACTGCATTAGCTGAAGTAGT 840
Query 846 AAAATCAGTTCTTATTGATTATCCAAAGCTGAAACTAACCCAAGGTAGAAAGGTACTTGA 905
||||||||||||||||||||||||| |||||||||||||||| ||||||||||| |||||
Sbjct 841 AAAATCAGTTCTTATTGATTATCCAGAGCTGAAACTAACCCAGGGTAGAAAGGTGCTTGA 900
Query 906 AATCCGCCCCACAATCAAATGGGACAAGGGCCAGGCACTCAATTTTTTACTAAAATCATT 965
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 901 AATCCGCCCCACAATCAAATGGGACAAGGGCCAGGCACTCAATTTTTTACTAAAATCATT 960
Query 966 AGGATATGAAAATTCGGATGATGTTGTGCCGGTGTATATCGGGGATGACCGTACTGACGA 1025
||||||||| |||||||| ||||||||||||||||| |||||||||||||||||||||||
Sbjct 961 AGGATATGAGAATTCGGAAGATGTTGTGCCGGTGTACATCGGGGATGACCGTACTGACGA 1020
Query 1026 AGATGCGTTTAAGGTTTTACGTGAAAGGGGACAAGGTTTTGGGATTCTTGTCTCAAAAGT 1085
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1021 AGATGCGTTTAAGGTTTTACGTGAAAGGGGACAAGGTTTTGGGATTCTTGTCTCAAAAGT 1080
Query 1086 ACCAAAGGACACCAATGCCTCTTATTCTCTTCAAGACCCTTCTCAGGTTAACAAGTTTCT 1145
||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct 1081 TCCAAAGGACACCAATGCCTCTTATTCTCTACAAGACCCTTCTCAGGTTAACAAGTTTCT 1140
Query 1146 GGAACGTTTAGTAGAATGGAAGAGGAAGACAGTGGGAGAAGAGTGAAAGACATGCAACAT 1205
||| |||||||| || ||||||||||||| ||||||||||||||||||||||||| ||||
Sbjct 1141 GGAGCGTTTAGTGGAGTGGAAGAGGAAGATAGTGGGAGAAGAGTGAAAGACATGCGACAT 1200
Query 1206 AATTACACAAATAACACCTGAGTTTTGAGTAGATTATTAATTTATATAAACACCCTTTTT 1265
|||| | ||||| || | |||||| |||||||||||||||||||
Sbjct 1201 AATT-------T------TGAGT----AG-A--TTATTAGTTTATATAAACACCCTTTT- 1239
Query 1266 AAATTAGTAGATGCCTGGAGGGTGTTTCGGCCAGAAGT-TTTTCTTTT-AATCTACATCG 1323
|||||||||||||||||||||||||||||||||||||| |||| |||| |||||||||||
Sbjct 1240 AAATTAGTAGATGCCTGGAGGGTGTTTCGGCCAGAAGTGTTTTTTTTTTAATCTACATCG 1299
Query 1324 AACCGAAAATTGTAAATTTCGTGTAACGATTTAGAAATGGAAAAA 1368
|||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1300 AACCGAAAATTGTAAATTTCGTGTAACGATTTAGAAATGGAAAAA 1344
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 52335996630
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5