BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT1G78110.1
Length=1508
Score E
Sequences producing significant alignments: (Bits) Value
Ahg476978 jgi|Araly1|476978|fgenesh2_kg.2__2108__AT1G78110.1 1903 0.0
> Ahg476978 jgi|Araly1|476978|fgenesh2_kg.2__2108__AT1G78110.1
Length=1264
Score = 1903 bits (1030), Expect = 0.0
Identities = 1196/1272 (94%), Gaps = 27/1272 (2%)
Strand=Plus/Plus
Query 1 ATCGATCCAAAAACCAAACACCAAGAAAACAAAAGCAGACTTAAAAGAAGCTATGATCAA 60
||||||||||||||||||| ||||||||||||||||||||| |||| |||||||||||||
Sbjct 1 ATCGATCCAAAAACCAAACCCCAAGAAAACAAAAGCAGACTAAAAAAAAGCTATGATCAA 60
Query 61 AGGAAACAATGGAAACAGAGGATCTTCTTCTTCTGGTTACTCTGCAGATTTGTTGGTTTG 120
||||||||||||||||||||||||||| ||||||||||||||||| ||||||||||||||
Sbjct 61 AGGAAACAATGGAAACAGAGGATCTTCATCTTCTGGTTACTCTGCCGATTTGTTGGTTTG 120
Query 121 TTTCCCTTCAAGAACCCACTTAGCTCTGACTCCTAAGCCCATTTGTAGCCCATCTCGTCC 180
||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct 121 TTTCCCTTCAAGAGCCCACTTAGCTCTGACTCCTAAGCCCATTTGTAGCCCATCTCGTCT 180
Query 181 CTCAGACTCTTCCACTAACCGTCGTCCTCACCACCGTCGCCAGCTCAGTAAACTCTCCGG 240
||| ||||| |||| |||||||||||| || |||||||||||||||||||||||||||||
Sbjct 181 CTCCGACTCCTCCATTAACCGTCGTCCCCAACACCGTCGCCAGCTCAGTAAACTCTCCGG 240
Query 241 CGGCGGTGGAGGAGGACACGGTAGTCCTGTTTTGTGGGCTAAACAAGCAAGTAGTAAGAA 300
||||||||||||| | |||||||||||||||||||||||||||||||||| ||||||||
Sbjct 241 CGGCGGTGGAGGA--A-ACGGTAGTCCTGTTTTGTGGGCTAAACAAGCAAGCAGTAAGAA 297
Query 301 TATGGGAGGTGACGAAATAGCAGAACCAACTTCTCCTAAAGTAACTTGCGCAGGTCAGAT 360
|||||| |||||||||||||| ||||| ||||||||||||||||||||||| ||||||||
Sbjct 298 TATGGGCGGTGACGAAATAGCCGAACCGACTTCTCCTAAAGTAACTTGCGCCGGTCAGAT 357
Query 361 CAAAGTCCGGCCAAGTAAATGCGGAGGGAGAGGAAAGAACTGGCAATCGGTGATGGAAGA 420
|||||||||||||||||||||||| |||||||||||||| ||||||||||||||||||||
Sbjct 358 CAAAGTCCGGCCAAGTAAATGCGGCGGGAGAGGAAAGAATTGGCAATCGGTGATGGAAGA 417
Query 421 GATTGAGAGGATACATGATAATAGATCGCAAAGCAAGTTTTTTGGGTTGAAGAAAGATGT 480
||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct 418 GATTGAGAGGATACATGATAATAGATCGCAAAGCAAGTTTTTTGGATTGAAGAAAGATGT 477
Query 481 GATGGGTTTCTTGACTTGTCTTAGAAACATCAAATTCGATTTCAGGTGTTTTGGTGATTT 540
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 478 GATGGGTTTCTTGACTTGTCTTAGAAACATCAAATTCGATTTCAGGTGTTTTGGTGATTT 537
Query 541 CCGACATGCTGATGTCACTAGCGACGACgatgaggaagaagatgatgatgatgatgagga 600
|||||||||||||||||| |||||||||||||||||||||||||||||||||||||| ||
Sbjct 538 CCGACATGCTGATGTCACAAGCGACGACGATGAGGAAGAAGATGATGATGATGATGACGA 597
Query 601 agaagaggtagtg-gaaggagaagaagaagagaaTTCAAAGACTGTTTTCTCTAAATGGT 659
||||| | || | ||| |||||||||||||||| ||||||||||||||||| |||||||
Sbjct 598 GGAAGAAGAAG-GCGAAAGAGAAGAAGAAGAGAACTCAAAGACTGTTTTCTCCAAATGGT 656
Query 660 TTATGGTTTTACAAGAGGAACAGAACAACAAAGATGACGACAAGAACAACAACAAGTGTG 719
|||||||||||||||||||||||| |||||||||||||||||||||||||| ||||||||
Sbjct 657 TTATGGTTTTACAAGAGGAACAGAGCAACAAAGATGACGACAAGAACAACAGCAAGTGTG 716
Query 720 ATGAGAAACGCGATCTTGAAGACACAGAGACAGAACCAGCGGTTCCGCCGCCAAACGCGC 779
|||||||||||||||||||||||||||||||||| |||| ||||||||||||||||||||
Sbjct 717 ATGAGAAACGCGATCTTGAAGACACAGAGACAGAGCCAGAGGTTCCGCCGCCAAACGCGC 776
Query 780 TTTTGTTGATGCGGTGTAGATCAGCTCCAGCgaagagttggttagaagagagaatgaaag 839
||||| ||||||| ||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct 777 TTTTGCTGATGCGATGTAGATCAGCTCCAGCGAAGAGTTGGCTAGAAGAGAGAATGAAAG 836
Query 840 taaaaacagagcaagaaaagagagaaga--a-caa-aa-ag-a-g-g-aaaaagaaacag 890
||||||||||||||||||| |||||||| | ||| || || | | | ||||||||||||
Sbjct 837 TAAAAACAGAGCAAGAAAACAGAGAAGAGCAACAAGAAGAGGAAGAGGAAAAAGAAACAG 896
Query 891 aggatcaagaaacgagtatgaagacaaagaagaagGATTTGAGATCATTAATGGAAGAAG 950
||||||||||||||||||||||||||||||||||||||||||| ||||||||||| ||||
Sbjct 897 AGGATCAAGAAACGAGTATGAAGACAAAGAAGAAGGATTTGAGGTCATTAATGGAGGAAG 956
Query 951 AGAAGATGGAATTGGTGTTGATGAGATACGATACTGAGTTTTACAGACTCTCTTCAGACA 1010
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 957 AGAAGATGGAATTGGTGTTGATGAGATACGATACTGAGTTTTACAGACTCTCTTCAGACA 1016
Query 1011 TAGCTAAGGAAACTTGGGTTGTCGGAGGAATTCAAGATCCTCTGTCTCGGAGTCGAAGCT 1070
||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct 1017 TAGCTAAGGAAACTTGGGTTGTCGGCGGAATTCAAGATCCTCTGTCTCGGAGTCGAAGCT 1076
Query 1071 GGAAAAATTGATTACACAGAT--TC-ATCGTTACTCATCAGTAAACATCGTATTTT-AAA 1126
|||||| ||||||| ||| || || | |||||||||||| ||||||||||||||| |||
Sbjct 1077 GGAAAAGTTGATTATACATATCCTCCACCGTTACTCATCATTAAACATCGTATTTTTAAA 1136
Query 1127 AACCTAATCAAGCGTTTTTACTATAATTTGATTATCTGTTAATTAATTTTGATACTTACA 1186
|| |||||||||||||||||||| | |||||||||||||||||||||||||||||| |
Sbjct 1137 AATCTAATCAAGCGTTTTTACTACA-TTTGATTATCTGTTAATTAATTTTGATACT--CG 1193
Query 1187 tttttttttt-tttgggtttcttgag-ttttttttA-ATGGTTCTTCT-C-CCTTTTGTT 1241
|||||||||| ||||||||||||||| |||||||| ||||||||||| | || || |||
Sbjct 1194 TTTTTTTTTTCTTTGGGTTTCTTGAGGTTTTTTTTTCATGGTTCTTCTTCTCCCTT-GTT 1252
Query 1242 TCGTATCTCAAA 1253
||||||||||||
Sbjct 1253 TCGTATCTCAAA 1264
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 56449743090
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5