BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT1G78120.1
Length=1758
Score E
Sequences producing significant alignments: (Bits) Value
Ahg476979 jgi|Araly1|476979|fgenesh2_kg.2__2109__AT1G78120.1 2639 0.0
Ahg930449 jgi|Araly1|930449|scaffold_302906.1 183 3e-45
> Ahg476979 jgi|Araly1|476979|fgenesh2_kg.2__2109__AT1G78120.1
Length=1709
Score = 2639 bits (1429), Expect = 0.0
Identities = 1625/1719 (95%), Gaps = 16/1719 (1%)
Strand=Plus/Plus
Query 1 TCTTTCTCCTCTGTTTCATCAAACTC-TTCATCAGTGCTTCTTATTTTCTTCAAAGCTTC 59
|||| ||||||||||||||| ||||| ||| ||| || | ||||||||| | ||||||||
Sbjct 1 TCTTACTCCTCTGTTTCATCGAACTCTTTCTTCACTG-TGCTTATTTTC-T-AAAGCTTC 57
Query 60 AAATTTCtttttttC-CTTCTTGCAATGGCAAAATCGAAGAAAATTTCTACAGGTCAAAT 118
||| ||||||||| ||||||| |||||| |||||||||||||| ||||| |||||| |
Sbjct 58 AAA---CTTTTTTTCTCTTCTTGAAATGGCCAAATCGAAGAAAATCTCTACGGGTCAACT 114
Query 119 ATTTGGTTGTGAGAGTCTCCTTGGGTGCATTTTCCAGAGCTGGAGCCCTCGCCGTCGAAA 178
|||||||||||||||||||||||| || |||||||| ||||||||||||||||| |||||
Sbjct 115 ATTTGGTTGTGAGAGTCTCCTTGGATGTATTTTCCAAAGCTGGAGCCCTCGCCGGCGAAA 174
Query 179 ACCCTCTTTACCGGAAAAGGATCATCGGGCAAAAGATAACTTGTCTTCCAAGTCATCAAC 238
|||||||||||||||||| |||||||||||||||||||||||| ||||||||||||||||
Sbjct 175 ACCCTCTTTACCGGAAAAAGATCATCGGGCAAAAGATAACTTGCCTTCCAAGTCATCAAC 234
Query 239 AACCGTTACAAACCCTAAAATCCTCCCAAGAAAATCCACCGATACTTCTTCTCAACCAAA 298
||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct 235 CACCGTTACAAACCCTAAAATCCTCCCAAGAAAATCGACCGATACTTCTTCTCAACCAAA 294
Query 299 GAAATCTGACTCC-CAGAAACCCCAACAAAAGCCAAAA-CCAGATGAGAATCACCCGCGA 356
||||||||| ||| ||||||||||| ||||| | |||| || |||||||||| |||| ||
Sbjct 295 GAAATCTGA-TCCTCAGAAACCCCAGCAAAAACAAAAATCC-GATGAGAATCTCCCGAGA 352
Query 357 AAATCATCGGAATCCGCCAGAAAATCATCTGATTCCGCAAGAAAATCGATTTCGTCAGGC 416
||||||||||| || |||||||||||||| ||||||||||||||||||||||||||||||
Sbjct 353 AAATCATCGGATTCTGCCAGAAAATCATCAGATTCCGCAAGAAAATCGATTTCGTCAGGC 412
Query 417 TCATCAAGAACAGAGAGCAAGAGATTCTCACTTAACGGCGTTATGGGAAACATCATCGTG 476
||||||||||||||||||||||||||||||||||||||||||||||||||||| || |||
Sbjct 413 TCATCAAGAACAGAGAGCAAGAGATTCTCACTTAACGGCGTTATGGGAAACATTATAGTG 472
Query 477 AAACCACAGCCAGCCGTTAAAACTGACGTGACACAGACGAAAAGTCGGTGGGAGGGTAAA 536
||||||||||| ||||||||| |||||||||||||||||| ||| ||||||||||| |||
Sbjct 473 AAACCACAGCCCGCCGTTAAAGCTGACGTGACACAGACGAGAAGACGGTGGGAGGGCAAA 532
Query 537 CCGGTAAATCACAGACTCGATCCAGAGACTCTGAAGAAAATGGGAAACGAAGAGTATTGT 596
||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 533 CCGGTAAATTACAGACTCGATCCAGAGACTCTGAAGAAAATGGGAAACGAAGAGTATTGT 592
Query 597 CGTGGGAGGTTTGGACAAGCTCTCGTGTTTTACGAGAGAGCCATTTCAGCTGACCCCAAA 656
||||||||||||||| ||||||| ||||||||||||||||||||||||||||||||||||
Sbjct 593 CGTGGGAGGTTTGGAGAAGCTCTTGTGTTTTACGAGAGAGCCATTTCAGCTGACCCCAAA 652
Query 657 ACGCCGACGTATTGGTCTAACAAATCCGCCGCTTTGATCAGTCTCGGTCGTCTTCTTGAA 716
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 653 ACGCCGACGTATTGGTCTAACAAATCCGCCGCTTTGATCAGTCTCGGTCGTCTTCTTGAA 712
Query 717 GCTTCTGATGCTTGTGAAGAAGCTTTAAGACTAAACCCAACTTACGAGAGAGCTCATCAG 776
|||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct 713 GCTTCTGATGCTTGCGAAGAAGCTTTAAGACTAAACCCAACTTACGAGAGAGCTCATCAG 772
Query 777 AGACTAGCTTCCCTCCAACTCAGATTGGGTGAGGTTGAGAAAGCTTTGTGTCACTATAAT 836
|||||||||||||||||||||||||||||||||||||| |||||| |||||||||||||
Sbjct 773 AGACTAGCTTCCCTCCAACTCAGATTGGGTGAGGTTGAAAAAGCTATGTGTCACTATAAC 832
Query 837 GAAGCTGGAAAATATACAGAGACAAAACATATTGAACAAGTTGAAGATGTTGTTAAATGC 896
|||||||||||||||||||||||||||||||| |||||||||||||||||| | ||||||
Sbjct 833 GAAGCTGGAAAATATACAGAGACAAAACATATAGAACAAGTTGAAGATGTTATAAAATGC 892
Query 897 TTAAGGAGGTGTGACGAAGCTCGAAGATCAAAGGAATGGAATGTTGCATTGAAAGAGACT 956
|||||||||||||| |||||||||||||||||||||||||||||||| ||||||||||||
Sbjct 893 TTAAGGAGGTGTGATGAAGCTCGAAGATCAAAGGAATGGAATGTTGCGTTGAAAGAGACT 952
Query 957 CTTTTTGCGATATCATATGGAGCAGATTCTTCTCCTCGGGTCTATGCACTCCAAACCGAG 1016
||||||||||| ||||||||||| ||||| || |||||||||||||| ||||||||||||
Sbjct 953 CTTTTTGCGATGTCATATGGAGCCGATTCATCGCCTCGGGTCTATGCGCTCCAAACCGAG 1012
Query 1017 GCTTTATTGCATCTTCAGCGACACGAGGAAGCATACAGCGTGTATCAGAAAGGAACAAAA 1076
|| ||||||||||| ||||||||||||||||| |||||||||||||| ||||||||||||
Sbjct 1013 GCCTTATTGCATCTGCAGCGACACGAGGAAGCGTACAGCGTGTATCAAAAAGGAACAAAA 1072
Query 1077 CGCTTCGACATCGATAGTTTCATAAAGATTTTTGGTCTTTCCCTCACTTCTTACCTCTTG 1136
|||||||| ||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct 1073 CGCTTCGAGATCGATAGTTTCATAAAGATTTTTGGTCTTTCCATCACTTCTTACCTCTTA 1132
Query 1137 ATGGTCGGAGCTCAGGTCTACATAGCAGTAGGAAGGTTTGAAGATGCAGTAACGGCGTCA 1196
||||||||||||||||||||||| ||||||||||| |||||||||||||||||||| |||
Sbjct 1133 ATGGTCGGAGCTCAGGTCTACATTGCAGTAGGAAGATTTGAAGATGCAGTAACGGCATCA 1192
Query 1197 AGGCAAGCGGCTCGACTTGATCCAAGCAGCGAAGAAGTAAACGCGGTGGCTAGAAAAGCG 1256
|||||||||||||| || ||||| ||||||||||||||||||||||||||||||||||||
Sbjct 1193 AGGCAAGCGGCTCGGCTGGATCCGAGCAGCGAAGAAGTAAACGCGGTGGCTAGAAAAGCG 1252
Query 1257 AGAGCGGTTGCTTCTGCAAGACTGAGTGGAAATTTGCTTTTCAACGCATCAAAATTTGAA 1316
|||||||||||||||||||||||||| |||||||||||||||||||| |||||||||||
Sbjct 1253 AGAGCGGTTGCTTCTGCAAGACTGAGCGGAAATTTGCTTTTCAACGCGGCAAAATTTGAA 1312
Query 1317 GGGGCTAGCGTGGTTTACACGGAAGGACTTGAGAACGATCCATATAATGCTCTCTTGCTC 1376
|||||| |||||||||||||||||||||||||||| ||||| ||||||||||||||||||
Sbjct 1313 GGGGCTTGCGTGGTTTACACGGAAGGACTTGAGAAAGATCCCTATAATGCTCTCTTGCTC 1372
Query 1377 TGTAACAGAGCTGCTTCAAGATTCAAGCTTGATCTGTTCGAGAAAGCTATTGAAGATTGC 1436
||||||||||||||||||||||||||||||| ||||||||||||||| ||||||||||||
Sbjct 1373 TGTAACAGAGCTGCTTCAAGATTCAAGCTTGGTCTGTTCGAGAAAGCCATTGAAGATTGC 1432
Query 1437 ACATTGGCTCTCAGTCTCCAGCCATCGTACCGGAAGGCGAGGCGGCGCAGGGCAGATTCT 1496
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1433 ACATTGGCTCTCAGTCTCCAGCCATCGTACCGGAAGGCGAGGCGGCGCAGGGCAGATTCT 1492
Query 1497 TATGCCAAGTTGGAGAAATGGCAACACGCGATTCAAGATTATGAGTTGTTGATGATGGAG 1556
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1493 TATGCCAAGTTGGAGAAATGGCAACACGCGATTCAAGATTATGAGTTGTTGATGATGGAG 1552
Query 1557 ACACCTGAAGACGAAGAGACTAGAAGAGCCTTAACTGAGGTGAATGTCCGGTTTAAGAAA 1616
|||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct 1553 ACACCTGAAGACGAAGAGACTAGAAGAGCCTTGACTGAGGTGAATGTCCGGTTTAAGAAG 1612
Query 1617 CAGACCGGTGGAGATGTCCGGTTTAAAGGAGTCGGCTCGGA-ATTGGTTGTGG-CTAATT 1674
||||||||||||||| ||||||||||||||||||||||||| || ||||| || | ||||
Sbjct 1613 CAGACCGGTGGAGATTTCCGGTTTAAAGGAGTCGGCTCGGATAT-GGTTGCGGTC-AATT 1670
Query 1675 GAAGTGTGAGATTTGGCTAAGCCGAATTGTATAGTTTTA 1713
||| || ||||||||||||| ||||||||||||||||||
Sbjct 1671 GAAATGGGAGATTTGGCTAAACCGAATTGTATAGTTTTA 1709
> Ahg930449 jgi|Araly1|930449|scaffold_302906.1
Length=204
Score = 183 bits (99), Expect = 3e-45
Identities = 138/157 (88%), Gaps = 2/157 (1%)
Strand=Plus/Plus
Query 83 AATGGCAAAATCGAAGAAAATTTCTACAGGTC-AAATATTTGGTTGTGAGAGTCTCCTTG 141
|||||| |||||| |||| || || || |||| |||| ||||||||||||||||||||||
Sbjct 21 AATGGCGAAATCGGAGAATATCTCCACGGGTCAAAAT-TTTGGTTGTGAGAGTCTCCTTG 79
Query 142 GGTGCATTTTCCAGAGCTGGAGCCCTCGCCGTCGAAAACCCTCTTTACCGGAAAAGGATC 201
| || |||||||| |||||| | ||| |||| | ||||||||||||||||||||||||||
Sbjct 80 GATGTATTTTCCAAAGCTGGGGTCCTAGCCGGCAAAAACCCTCTTTACCGGAAAAGGATC 139
Query 202 ATCGGGCAAAAGATAACTTGTCTTCCAAGTCATCAAC 238
|||||||||||| ||||||| ||| ||||||||||||
Sbjct 140 ATCGGGCAAAAGTTAACTTGCCTTTCAAGTCATCAAC 176
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 65972304340
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5