BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT1G78130.1
Length=1592
Score E
Sequences producing significant alignments: (Bits) Value
Ahg316721 jgi|Araly1|316721|fgenesh1_pm.C_scaffold_2001754 2272 0.0
> Ahg316721 jgi|Araly1|316721|fgenesh1_pm.C_scaffold_2001754
Length=1455
Score = 2272 bits (1230), Expect = 0.0
Identities = 1381/1454 (95%), Gaps = 9/1454 (1%)
Strand=Plus/Plus
Query 32 ATGAAGGCGGAGACGATGACGCTGCTTCTTGTGAATCTAGCCGGAATAATGGAAAGAGCC 91
||||||||||||||| ||||| || |||| |||||| |||||||||||||||||||||||
Sbjct 1 ATGAAGGCGGAGACGGTGACGTTGATTCTGGTGAATATAGCCGGAATAATGGAAAGAGCC 60
Query 92 GATGAATCTCTGCTTCCAGGTGTATACAAAGAGGTCGGTTTAGCTCTTCATACCGATCCA 151
|| |||||||||||||| ||||||||||||||||||||||||||||| ||||||||||||
Sbjct 61 GACGAATCTCTGCTTCCTGGTGTATACAAAGAGGTCGGTTTAGCTCTCCATACCGATCCA 120
Query 152 ACCGGACTCGGGTCATTAACGTTGCTACGATCCATGGTTCAAGCCGCTTGCTATCCCTTA 211
|||||||||||||||||||||||||| ||||| |||||||||||||||||||||||||||
Sbjct 121 ACCGGACTCGGGTCATTAACGTTGCTGCGATCAATGGTTCAAGCCGCTTGCTATCCCTTA 180
Query 212 GCTGCTTACATGGCCATTAGACATAACCGAGCTCACGTTATAGCTCTGGGTGCATTTCTC 271
||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct 181 GCTGCTTACATGGCCATTAGACATAACCGAGCTCACGTTATAGCTCTCGGTGCATTTCTC 240
Query 272 TGGTCCGCTGCTACTTTCCTTGTCGCTTTCTCTTCCACTTTCTTCCAGGTAGCAGTGTCT 331
||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct 241 TGGTCCGCTGCTACTTTCCTTGTCGCTTTCTCTTCCACTTTCTTCCAGGTAGCTGTGTCT 300
Query 332 AGAGCTCTGAATGGAATTGGTCTTGCTCTT-GTGGCTCCAGCTATTCAGTCTCTCGTTGC 390
|||||||| ||||||||||||||||| ||| ||||||||||||||||| ||||| |||||
Sbjct 301 AGAGCTCTCAATGGAATTGGTCTTGC-CTTAGTGGCTCCAGCTATTCAATCTCTTGTTGC 359
Query 391 TGACTCAACTGATGATGCTAACCGTGGTACTGCTTTTGGATGGTTACAATTAACAGCAAA 450
||| ||||||||||||||||||||||||||||||||||| ||||| ||||||||||||||
Sbjct 360 TGATTCAACTGATGATGCTAACCGTGGTACTGCTTTTGGTTGGTTGCAATTAACAGCAAA 419
Query 451 TATTGGTTCGATTTTAGGCGGGCTTTGCTCTGTTTTAATAGCTCCATTAACCTTTATGGG 510
|| |||||||||||||||||||||||||||||||||||||||||||| ||||| |||||
Sbjct 420 CATCGGTTCGATTTTAGGCGGGCTTTGCTCTGTTTTAATAGCTCCATTTACCTTCATGGG 479
Query 511 CATACCTGGTTGGAGAGTTGCTTTCCATATCGTAGGTGTGATCAGTGTTATTGTTGGTGT 570
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 480 CATACCTGGTTGGAGAGTTGCTTTCCATATCGTAGGTGTGATCAGTGTTATTGTTGGTGT 539
Query 571 GCTAGTTAGAGTTTTCGCCAATGATCCACATTTTGTGAAGGATGGTGTTGATGTTTCGAA 630
| |||| ||||||| ||||||||| |||||||||||||||||||||||||||||||||||
Sbjct 540 GTTAGTCAGAGTTTACGCCAATGACCCACATTTTGTGAAGGATGGTGTTGATGTTTCGAA 599
Query 631 TCAACCAGGTTCGAGGAAACCTTTTTGTACAGAGGTGAAGGATTTGGTCCGGGAAGCTGA 690
||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 600 TCAACGAGGTTCGAGGAAACCTTTTTGTACAGAGGTGAAGGATTTGGTCCGGGAAGCTGA 659
Query 691 TACTGTCATAAAGATTCGGTCTTTTCAGATCATTGTAGCTCAGGGAGTGACAGGATCGTT 750
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 660 TACTGTCATAAAGATTCGGTCTTTTCAGATCATTGTAGCTCAGGGAGTGACAGGATCGTT 719
Query 751 TCCTTGGTCTGCTCTTTCTTTTGCACCTATGTGGTTGGAACTCATTGGGTTCTCACACGG 810
||||||||||||||||||||||||||| ||||||||||||||||| ||||||||||||||
Sbjct 720 TCCTTGGTCTGCTCTTTCTTTTGCACCCATGTGGTTGGAACTCATCGGGTTCTCACACGG 779
Query 811 GAAAACTGCATTCTTGATGGGTCTTTTCGTGGCTGCATCTTCTCTTGGTGGCTTGTTTGG 870
||||||||||||||||||||||||||| |||||||||||||||||||||||||| |||||
Sbjct 780 GAAAACTGCATTCTTGATGGGTCTTTTTGTGGCTGCATCTTCTCTTGGTGGCTTATTTGG 839
Query 871 AGGCAAAATGGGAGATTTTCTGTCTACTCGTCTTCCCAATTCCGGAAGAATCATTCTCGC 930
|||||| ||||||||||||||||||||||||||||| |||||||||||||||||||| ||
Sbjct 840 AGGCAATATGGGAGATTTTCTGTCTACTCGTCTTCCTAATTCCGGAAGAATCATTCTTGC 899
Query 931 GCAGATTAGTTCAGCCTCAGCGATCCCGCTCGCTGCAATTCTCTTGTTGGTCTTACCAGA 990
|||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 900 GCAGATCAGTTCAGCCTCAGCGATCCCGCTCGCTGCAATTCTCTTGTTGGTCTTACCAGA 959
Query 991 TGATCCATCTACAGCTGCAATCCATGGTCTGATCTTAGTCCTATTGGGGCTATTT-GTTT 1049
||||||||| ||||||||||| |||||||| |||||||||||| ||||||| ||| || |
Sbjct 960 TGATCCATCCACAGCTGCAATGCATGGTCTCATCTTAGTCCTACTGGGGCT-TTTCGTCT 1018
Query 1050 CTTGGAATGCTCCTGCTACCAACAACCCAATCTTCGCAGAGATCGTTCCAGAGAAATCAA 1109
|||||||||||||||||||||||||||| ||||| |||||||| ||||||||||||||||
Sbjct 1019 CTTGGAATGCTCCTGCTACCAACAACCCGATCTTTGCAGAGATTGTTCCAGAGAAATCAA 1078
Query 1110 GAACAAGCGTCTACGCACTGGACAAATCGTTTGAGTCTATCTTGTCATCGTTTGCACCTC 1169
||||||||||||||||||||||||||||||||||||| ||||||||||||||||| ||||
Sbjct 1079 GAACAAGCGTCTACGCACTGGACAAATCGTTTGAGTCGATCTTGTCATCGTTTGCTCCTC 1138
Query 1170 CTATAGTTGGAATCCTGGCACAACATGTTTATGGATACAAGCCAATCCCTGAAGGGTCAT 1229
|| |||||||||| || |||||||||||||||||||| |||||||| |||||||||||||
Sbjct 1139 CTGTAGTTGGAATTCTAGCACAACATGTTTATGGATATAAGCCAATTCCTGAAGGGTCAT 1198
Query 1230 CGAGGTCAACAGAGATAGCCACAGATAGAGAGAATGCAGCATCTCTGGCAAAAGCTCTTT 1289
| | ||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1199 CTAAATCAGCAGAGATAGCCACAGATAGAGAGAATGCAGCATCTCTGGCAAAAGCTCTTT 1258
Query 1290 ATACATCTATAGGACTCCCAATGGCGGCTTGCTGCTTCATATACTCCTTTCTTTACCGTT 1349
|||||||||||||| ||||||||||||||||||||||||| ||||||||||||||||||
Sbjct 1259 ATACATCTATAGGAATCCCAATGGCGGCTTGCTGCTTCATCTACTCCTTTCTTTACCGTA 1318
Query 1350 CCTATCCTCTAGACAGAGATCGTGCTCGGATGGAAGCTTTTATAGATTCTGAGATGCGTG 1409
|||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct 1319 CCTATCCTCTAGACAGAGATCGTGCTCGGATGGAGGCTTTTATAGATTCTGAGATGCGTG 1378
Query 1410 AACTTCTTCCAGAAAGTTCCAATC-GAGACATTGAGTTTTCACAAGAAGAAGACCCCTTT 1468
|||| ||||| ||||||||||| | ||||||||||| ||||||||||||| | |||
Sbjct 1379 AACTGCTTCCGGAAAGTTCCAA-CAGAGACATTGAGGTTTCACAAGAAGAC-ATT--TTT 1434
Query 1469 GCAAACCATGTTAA 1482
||||||||||||||
Sbjct 1435 GCAAACCATGTTAA 1448
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 59649323670
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5