BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT1G78140.1
Length=1314
Score E
Sequences producing significant alignments: (Bits) Value
Ahg909440 jgi|Araly1|909440|Al_scaffold_0002_2521 1637 0.0
> Ahg909440 jgi|Araly1|909440|Al_scaffold_0002_2521
Length=1059
Score = 1637 bits (886), Expect = 0.0
Identities = 1008/1066 (95%), Gaps = 11/1066 (1%)
Strand=Plus/Plus
Query 75 ATGACGGTTGTTTCCGGTCGATTCTCAACGGCGTTGCTCCCTACTTGCTTTTCCTTGTCG 134
||||||||||||||||||||||||||||||||||| ||||||||||| |||||||| |||
Sbjct 1 ATGACGGTTGTTTCCGGTCGATTCTCAACGGCGTTTCTCCCTACTTGTTTTTCCTTATCG 60
Query 135 CGGTTGCATTCCGTCAAG-TACGCCGCTCAAAGACGGGTTGTTTTCGTTTCCAGATCAGC 193
||||||||||||||| || ||||||||||||||| | |||||||| ||||||||||||||
Sbjct 61 CGGTTGCATTCCGTC-AGCTACGCCGCTCAAAGATGTGTTGTTTTTGTTTCCAGATCAGC 119
Query 194 TCACGCCTCTTCAGCCTCCGTCTCCGTTGAGACAAATTCGAAT-T-CGAATGTGGATTTT 251
||||||||| ||||||||||||||||| ||||| ||||||||| | || |||| | |
Sbjct 120 TCACGCCTCATCAGCCTCCGTCTCCGTCGAGACGAATTCGAATGTACG--CGTGGGCTCT 177
Query 252 GTTATCGAGAAGAAGGATAAGAACAGAGGAGAGAAGAAGATTCTAGCTTGTCCCATCTGT 311
|||||| | ||||||| |||| |||||||||||||||||||||||||||||||||||||
Sbjct 178 GTTATC--G-AGAAGGAGAAGACCAGAGGAGAGAAGAAGATTCTAGCTTGTCCCATCTGT 234
Query 312 TATAACTCCTTAGCATGGATTAGTCAACCTAATGGATTAATAGAATCTGCTGCCTCTGGT 371
||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct 235 TATAACTCCTTAGCATGGAGTAGTCAACCTAATGGATTAATAGAATCTGCTGCCTCTGGT 294
Query 372 ATTCAAGTACAATGCAATACATGTAAAAGGAGTTACTCGGGTAATGAGACGCATCTTGAT 431
| ||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct 295 ACTCAAGTACAATGCAATACATGTAAAAGGAGTTACTTGGGTAATGAGACGCATCTTGAT 354
Query 432 TTGGCTGTTGCTAGTGGAAGCAAGAGATACAGTGAACCGATGCCTCTTTCCACTGAGTTA 491
|||||||| ||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct 355 TTGGCTGTGGCTAGTGGAAGCAAGAGATACAGTGAACCAATGCCTCTTTCCACTGAGTTA 414
Query 492 TTTAGGACTCCACTGGTCTCGTTTCTCTATGAGAGGGGTTGGCGTCAGAATTTCATATGG 551
|| ||||||||| | |||||||| || |||||||||||||||||||||||||||||||||
Sbjct 415 TTCAGGACTCCATTAGTCTCGTTCCTTTATGAGAGGGGTTGGCGTCAGAATTTCATATGG 474
Query 552 GGAGGTTTTCCAGGACCAGAGAAAGAGTTTGAAATGGCTAAGGCCTATCTGAAGCCTGTT 611
||||||||||||||||||||||||||||||||||||||||| | ||| ||||||||||||
Sbjct 475 GGAGGTTTTCCAGGACCAGAGAAAGAGTTTGAAATGGCTAAAGACTACCTGAAGCCTGTT 534
Query 612 TTGGGAGGCAATATCATTGATGCTAGTTGTGGAAGTGGGATGTTCTCGAGGTTATTCACT 671
||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| ||
Sbjct 535 TTGGGAGGCAATATCATTGATGCTAGTTGTGGAAGTGGGATGTTCTCAAGGTTATTCGCT 594
Query 672 AGAAGTGA-TCTATTTTCTCTGGTTATTGCTCTAGATTACTCAGAGAATATGCTGCGACA 730
|||||||| | | ||||||||||||||||| || ||||||||||||||||||||||||||
Sbjct 595 AGAAGTGAGT-TGTTTTCTCTGGTTATTGCCCTTGATTACTCAGAGAATATGCTGCGACA 653
Query 731 ATGCTATGAACTCTTAAATAAAGAAGAAAACTTTCCCAACAAAGAGAAACTTGTTCTAGT 790
|||||||||||||||||| ||||||||||||||||||||| ||||||||||||||||||
Sbjct 654 GTGCTATGAACTCTTAAATCAAGAAGAAAACTTTCCCAACAGAGAGAAACTTGTTCTAGT 713
Query 791 CCGAGCTGACATTGCTAGACTCCCTTTCCTTTCGGGTTCAGTTGACGCTGTCCATGCTGG 850
|||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 714 CCGAGCAGACATTGCTAGACTCCCTTTCCTTTCGGGTTCAGTTGACGCTGTCCATGCTGG 773
Query 851 TGCTGCTCTGCATTGCTGGCCTTCACCATCCTCAGCCGTTGCTGAGATAAGCCGTGTTCT 910
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 774 TGCTGCTCTGCATTGCTGGCCTTCACCATCCTCAGCCGTTGCTGAGATAAGCCGTGTTCT 833
Query 911 TAGACCTGGAGGAGTATTTGTGGCCACCACATTTATCTATGACGGTCCATTCAGTTTTAT 970
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 834 TAGACCTGGAGGAGTATTTGTGGCCACCACATTTATCTATGACGGTCCATTCAGTTTTAT 893
Query 971 CCCCTTCTTGAAGAATCTTCGTCAGGAAATAATGAGATATTCAGGTTCTCACATTTTCCT 1030
|||||| ||||||||||||||||||||| ||||||||||||||||||||||||| |||||
Sbjct 894 CCCCTTTTTGAAGAATCTTCGTCAGGAATTAATGAGATATTCAGGTTCTCACATGTTCCT 953
Query 1031 AAATGAACGTGAGCTTGAAGATATCTGCAAAGCCTGTGGTCTCGTTAACTTCACTCGTGT 1090
||||||||||||||||||||| |||||||||||||||| |||||| ||||||||||||
Sbjct 954 GAATGAACGTGAGCTTGAAGATCTCTGCAAAGCCTGTGGACTCGTTGGCTTCACTCGTGT 1013
Query 1091 TAGAAACGGGCCATTTATAATGCTATCTGCAACAAAACCCAGCTAA 1136
||||||||||||||||||||||||||| || |||||||||||||||
Sbjct 1014 TAGAAACGGGCCATTTATAATGCTATCCGCCACAAAACCCAGCTAA 1059
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 49140440013
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5