BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT1G78150.3
Length=1061
Score E
Sequences producing significant alignments: (Bits) Value
Ahg476982 jgi|Araly1|476982|fgenesh2_kg.2__2112__AT1G78150.2 1031 0.0
Ahg952612 jgi|Araly1|952612|scaffold_95400002.1 126 3e-28
> Ahg476982 jgi|Araly1|476982|fgenesh2_kg.2__2112__AT1G78150.2
Length=1145
Score = 1031 bits (558), Expect = 0.0
Identities = 629/664 (95%), Gaps = 2/664 (0%)
Strand=Plus/Plus
Query 399 AGGAAGCCTTGCTCAGAACATAAAATGAAGGAGATAACTGGCAGTGGGATCTTTTCTCGT 458
||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 351 AGGAAACCTTGCTCAGAACATAAAATGAAGGAGATAACTGGCAGTGGGATCTTTTCTCGT 410
Query 459 AACGAAAAAGATGATGCGTCAGAGCCATTACCAGTTTATCAGCAAGCAGTTAATGGTATA 518
|||||| | |||||||| |||||||||||||| ||||||||||||||| ||| |||||||
Sbjct 411 AACGAACATGATGATGCATCAGAGCCATTACCGGTTTATCAGCAAGCACTTAGTGGTATA 470
Query 519 AGCCAGATATCATTTGGTGAAGAGGAAAATCTATCTCCTAAAAAGCCGGCTACTGTACCT 578
|||||||||||||||||||| |||||| ||||||||||||||||||||||||||||||||
Sbjct 471 AGCCAGATATCATTTGGTGAGGAGGAAGATCTATCTCCTAAAAAGCCGGCTACTGTACCT 530
Query 579 GAAGTGGCGAAACAGCGAGAGCTCAGTGGGACTATGGAGAATGAATCAGCTAATAAGCT- 637
||||| || ||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct 531 GAAGTCGCCAAACAGCGAGAGCTCAGTGGGACTATGGAGAATGATTCAGCTAATAAGCTG 590
Query 638 ACAGAAGCAGCTCTCTGATGCTAAATACAAAGAGATCAGTGGACAGAACATCTTTGCACC 697
| |||||||||||||||||||||| || ||||||||||||||||||||||||||||||||
Sbjct 591 A-AGAAGCAGCTCTCTGATGCTAAGTATAAAGAGATCAGTGGACAGAACATCTTTGCACC 649
Query 698 ACCGCCTGAGATCAAACCTCGATCTGGAACTAATCGTGCATTGGCTCTTAAGGACAATTT 757
||||||||||||||||||| |||||||||| |||||||| ||||||||||||||||||||
Sbjct 650 ACCGCCTGAGATCAAACCTAGATCTGGAACAAATCGTGCGTTGGCTCTTAAGGACAATTT 709
Query 758 CAACCTCGGAGCTGAATCTCAAACTGCTGAAGAAGACTCATCTGTGAAGACAGCAAAGAA 817
|||||||||||||||||||||| |||||| ||||||||||||||||||||||||||||||
Sbjct 710 CAACCTCGGAGCTGAATCTCAATCTGCTGGAGAAGACTCATCTGTGAAGACAGCAAAGAA 769
Query 818 GATTTATGACAAGAAATTCGCAGAACTTTCAGGAAACGACATATTCAAGGGAGATGCGGC 877
||||||||||||||||||||||||||||||||| ||||||||||||||||||| ||||||
Sbjct 770 GATTTATGACAAGAAATTCGCAGAACTTTCAGGGAACGACATATTCAAGGGAGCTGCGGC 829
Query 878 GTCATCTAATGTTGAAAAGCATCTGAGTCAAGCGAAGCTAAAGGAGATAGGAGGAAACAA 937
|||||| |||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct 830 ATCATCTTCTGTTGAAAAGCATCTGAGTCAAGCAAAGCTAAAGGAGATAGGAGGAAACAA 889
Query 938 CATATTTGCAGATGGGAAAGTAGAAGCAAGAGACTATTTAGGCGGTGTCCGTAAACCACC 997
|||||||||||||||||||||||| |||||||||||| ||||||||||||||||||||||
Sbjct 890 CATATTTGCAGATGGGAAAGTAGAGGCAAGAGACTATCTAGGCGGTGTCCGTAAACCACC 949
Query 998 AGGTGGAGAGACAAGCATCGCACTTGTTTAAAATCATCTTTTTCGGTAACAACTTAACTC 1057
|||||| ||||||||||| || ||||||||||| | | ||||||||||||||||||||||
Sbjct 950 AGGTGGTGAGACAAGCATTGCCCTTGTTTAAAACCCTTTTTTTCGGTAACAACTTAACTC 1009
Query 1058 TTTT 1061
||||
Sbjct 1010 TTTT 1013
Score = 329 bits (178), Expect = 2e-89
Identities = 200/211 (95%), Gaps = 0/211 (0%)
Strand=Plus/Plus
Query 105 GAGTGAGAGAGTATGGAGAGAAGTACTCCGGTGAGAAAGCCACACACATCGACCGCAGAT 164
||| || ||| ||||||||||||||| ||||||||||||||||| ||||| || ||||||
Sbjct 144 GAGAGACAGACTATGGAGAGAAGTACGCCGGTGAGAAAGCCACATACATCCACTGCAGAT 203
Query 165 CTACTTACTTGGTCGGAAGTTCCACCGCCGGATTCTCCTTCCTCCGCTTCTCGCTCCGCC 224
||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct 204 CTACTTACTTGGTCGGAGGTTCCACCGCCGGATTCTCCTTCCTCCGCTTCTCGCTCCGCC 263
Query 225 GTTCGTTCCCACCAGCCATCGGATGGGATTAGCAAAGTGGTGTTTGGTGGTCAAGTCACC 284
||||||||||||||||||||||||||||||||||||||||||||||| |||||||| |||
Sbjct 264 GTTCGTTCCCACCAGCCATCGGATGGGATTAGCAAAGTGGTGTTTGGAGGTCAAGTGACC 323
Query 285 GATGAAGAAGTTGAGAGCTTGAACCGCAGGA 315
|||||||||||||||||||||||||| ||||
Sbjct 324 GATGAAGAAGTTGAGAGCTTGAACCGAAGGA 354
> Ahg952612 jgi|Araly1|952612|scaffold_95400002.1
Length=435
Score = 126 bits (68), Expect = 3e-28
Identities = 106/123 (86%), Gaps = 7/123 (6%)
Strand=Plus/Plus
Query 124 GAAGTACTCCGGTGAGAAAG-C-CACACA--CATCG-A--CCGCAGATCTACTTACTTGG 176
|||| | ||||||||||||| | |||||| || || | ||| |||| | |||||||||
Sbjct 38 GAAGCATTCCGGTGAGAAAGTCACACACATCCACCGTAGTCCGTAGATATGCTTACTTGG 97
Query 177 TCGGAAGTTCCACCGCCGGATTCTCCTTCCTCCGCTTCTCGCTCCGCCGTTCGTTCCCAC 236
||||| |||||| ||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct 98 TCGGAGGTTCCATCGCCGGATTCTCCTTAATCCGCTTCTCGCTCCGCCGTTCGTTCCCAC 157
Query 237 CAG 239
|||
Sbjct 158 CAG 160
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 39495342012
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5