BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT1G78160.1
Length=1953
Score E
Sequences producing significant alignments: (Bits) Value
Ahg476984 jgi|Araly1|476984|fgenesh2_kg.2__2114__AT1G78160.1 2859 0.0
Ahg335467 jgi|Araly1|335467|fgenesh1_pg.C_scaffold_1002032 870 0.0
> Ahg476984 jgi|Araly1|476984|fgenesh2_kg.2__2114__AT1G78160.1
Length=1961
Score = 2859 bits (1548), Expect = 0.0
Identities = 1833/1969 (93%), Gaps = 25/1969 (1%)
Strand=Plus/Plus
Query 1 ATGGATGAGTTTCGTGAAGCTTCTTCGGTCTCTTCGTCTCCTTCGACTCCACTACGAACA 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1 ATGGATGAGTTTCGTGAAGCTTCTTCGGTCTCTTCGTCTCCTTCGACTCCACTACGAACA 60
Query 61 CCCTTACATTCTCCAAACCTCTTTAATGGAGATTTCTCCGTTAGCAACAGATTCTCTTTC 120
|| ||||||||||||||||||||| | |||||||||||| ||||||||||||||||||||
Sbjct 61 CCGTTACATTCTCCAAACCTCTTTCACGGAGATTTCTCCATTAGCAACAGATTCTCTTTC 120
Query 121 AAGTCTTCATCAGACTATTCTTTATCAAGTTCCTTCTCTAATGGACTCTGTTCTCCTGAA 180
|| |||||||| || ||||||||||||||||| |||||||||||| ||||||||||||||
Sbjct 121 AACTCTTCATCTGATTATTCTTTATCAAGTTCTTTCTCTAATGGATTCTGTTCTCCTGAA 180
Query 181 GATAGTTCTTCTCCGTTTTCTTCTCCTCCGTTTAACGGGATCATTCCTAAGC-ACAATCA 239
||||||||||||||||| ||||||||||||||| ||||||||||||||||| | |||||
Sbjct 181 GATAGTTCTTCTCCGTTCGCTTCTCCTCCGTTTAGCGGGATCATTCCTAAGCTA-AATCA 239
Query 240 CACTTCATCA-TCACCTGTC-T---C-T--T-TTGATTCATTGTTTTTCAAGGATCATGA 290
||||||| || || | | || | | | | ||||| ||||||| ||||||||||||
Sbjct 240 CACTTCACCAGTCTCTTTTCATAACCATAATAATGATTTATTGTTTCACAAGGATCATGA 299
Query 291 AAAGAGTCATGTTAATGGT-ACTGATGATTTAGGTTTGTGTGAAGATCTCTATCGTATGA 349
||||||||||||||||||| | |||||||||||||||||||||||||||||| |||||||
Sbjct 300 AAAGAGTCATGTTAATGGTGA-TGATGATTTAGGTTTGTGTGAAGATCTCTACCGTATGA 358
Query 350 ATATCAAGGAGGATGTTGAAGAAGATCAAATACGTTACGCACGAACCGAGACTCTTAAAG 409
||||||||||||||||||||||||||||| |||||||||||||||| ||||||| | |
Sbjct 359 ATATCAAGGAGGATGTTGAAGAAGATCAAGTACGTTACGCACGAACTGAGACTC---ACG 415
Query 410 ATCCTCTTCCTAAGTCTGATCACACTGACTTCACTCCAGATCCACTCTACAACTTTTCAC 469
| | ||||||||||||||||||| |||||||||| ||||||||||||||||||||||
Sbjct 416 GTTCGATTCCTAAGTCTGATCACACCGACTTCACTCTTGATCCACTCTACAACTTTTCAC 475
Query 470 CTAAACACTATGAACCTAGCAATGGTGGATTTGTCTCTGGAGGCTTTCCATATGGATTCT 529
|||||||||||||| ||| ||||||||||||||| |||||||||||||||| ||||||||
Sbjct 476 CTAAACACTATGAATCTAACAATGGTGGATTTGTGTCTGGAGGCTTTCCATGTGGATTCT 535
Query 530 TTCGTCCACCAAAGGAGTCTAGTATTAACCAGTCATGTGCCTCGTGGTCTGGATTCGATC 589
|||||||| |||| ||||||||| |||||||| |||||| ||||||||||||||||||||
Sbjct 536 TTCGTCCAACAAAAGAGTCTAGTGTTAACCAGCCATGTGACTCGTGGTCTGGATTCGATC 595
Query 590 AAAGCAAAAATGACGACAAGAGAAACATGTTTGGGAACAATCCTCAACAATTTGGATGGC 649
|||||||||||| |||||||||||||||||||||||| |||||||||||| |||||||||
Sbjct 596 AAAGCAAAAATGTCGACAAGAGAAACATGTTTGGGAATAATCCTCAACAAATTGGATGGC 655
Query 650 CTAGCTACTCAAGCAGTAATAGTGGTACTAGTCCTTACAACAATGGTCAGGAGATTTTCG 709
|||||||||||||||||||| |||| ||||||||||||||||||||||||||||||||||
Sbjct 656 CTAGCTACTCAAGCAGTAATGGTGGCACTAGTCCTTACAACAATGGTCAGGAGATTTTCG 715
Query 710 AAAATCGAGGCGGAATGAGAGAGTACTCAGCTTACTCGCC-CC-C-ACATCAACCCGA-A 765
|||||||| |||||||||||||| |||||||||||||| || | ||| |||||||| |
Sbjct 716 GAAATCGAGTTGGAATGAGAGAGTATTCAGCTTACTCGCCGCCACAACAACAACCCGATA 775
Query 766 GTTTCTTATAAGCATCAAAATTACAGAACAACAACATCAGACATATTACCATTGTTCTGC 825
|||| ||||| ||||||| |||||||||||||||||||||||| |||||||| ||||||
Sbjct 776 -TTTCGTATAATCATCAAAGTTACAGAACAACAACATCAGACATCTTACCATTTTTCTGC 834
Query 826 CAACGAACTCAAGTC-CCTATGGTTTCAAAATGCTCTGAGCCATTTAGCTCTGATGAGAG 884
||| ||||||||| | ||||||||||||||||| ||||||||||||||| ||||||| ||
Sbjct 835 CAAGGAACTCAAG-CTCCTATGGTTTCAAAATGGTCTGAGCCATTTAGCGCTGATGATAG 893
Query 885 TTTCTTCATGAATGGTAAAAGCATT-GATCATCAGAGAAGCAATACTCGAGCATTGATGT 943
||||||||||||||| |||||| || |||||||||||||||| |||||||||| ||||||
Sbjct 894 TTTCTTCATGAATGGGAAAAGC-TTGGATCATCAGAGAAGCAGTACTCGAGCAGTGATGT 952
Query 944 CTAATAATGGAAATCCTACGGAGATATGTCATCCAAGTCTGCCTAACATGTGTGACATTC 1003
|| || |||| | | |||| |||||||||||||| |||||||||||||||||||||||||
Sbjct 953 CTGATCATGGGAGTACTACAGAGATATGTCATCCGAGTCTGCCTAACATGTGTGACATTC 1012
Query 1004 AAGGATATGTTTACTTAATGGCTAAAGATCAACACGGATGTCGATTCTTGCAGAGGATTT 1063
|||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1013 AAGGATATGTATACTTAATGGCTAAAGATCAACACGGATGTCGATTCTTGCAGAGGATTT 1072
Query 1064 TCGATGAAGGAACTTCTGTTGACGCGATGATTATATTCAATGAAGTTATTGCTCATGTTG 1123
|||||||||||||||| | |||||| ||||| |||||||||||||||||||||||||| |
Sbjct 1073 TCGATGAAGGAACTTCCGCTGACGCAATGATCATATTCAATGAAGTTATTGCTCATGTCG 1132
Query 1124 TTGAGCTTATGATGGATCCTTTTGGGAATTACCTGATGCAGAAACTCTTAGATGTTTGTA 1183
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1133 TTGAGCTTATGATGGATCCTTTTGGGAATTACCTGATGCAGAAACTCTTAGATGTTTGTA 1192
Query 1184 CTGAAGAACAGAGGACACAGATCGTGCTCGTGGCAACTGAGGAGCCTGGTCAACTTATCC 1243
|||||||||||||||| || ||||||||||||||||| | ||||||||||||||||||||
Sbjct 1193 CTGAAGAACAGAGGACGCAAATCGTGCTCGTGGCAACCGCGGAGCCTGGTCAACTTATCC 1252
Query 1244 GGATATCTCTCAATGCATACGGTACTCGAGTTGTCCAAAGATTAGTGGAAACAATCAGAA 1303
|||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct 1253 GGATATCTCTCAATGCATACGGTACTCGGGTTGTCCAAAGATTAGTGGAAACAATCAGAA 1312
Query 1304 GCGGAAAACAGATTTCTCTGGTGAAATTGGCTTTGAGACCCGGTTTTCTTGATTTGATCA 1363
|||||||||||||||||||||||||| ||| ||||||||||||||||||||||||||||
Sbjct 1313 CCGGAAAACAGATTTCTCTGGTGAAATCGGCATTGAGACCCGGTTTTCTTGATTTGATCA 1372
Query 1364 AAGATTTAAATGGAAACCATGTGATTCAACGTTGCTTGCAATGCCTTAGCACTGAAGATA 1423
||||||||||||| |||||||||||||||||||||||||||||||| |||||||||||||
Sbjct 1373 AAGATTTAAATGGCAACCATGTGATTCAACGTTGCTTGCAATGCCTAAGCACTGAAGATA 1432
Query 1424 ACAAGTTTATCTTTGACGCGGCGACAAAGTTCTGCACTGAAATCGCAACACATCGACATG 1483
|||||||||||||||| |||||||||||||||||||||||||||||||||||| ||||||
Sbjct 1433 ACAAGTTTATCTTTGATGCGGCGACAAAGTTCTGCACTGAAATCGCAACACATAGACATG 1492
Query 1484 GATGTTGTGTGCTACAAAAATGCATTGCTTATTCAATGAGACAACAACGAGAGAAACTGA 1543
||||||||||||| ||||||||||||||||| ||||||||||||||||||||||| ||||
Sbjct 1493 GATGTTGTGTGCTTCAAAAATGCATTGCTTACTCAATGAGACAACAACGAGAGAAGCTGA 1552
Query 1544 TCGCTGAGATCTCTAGAAACAGTCTCCTTCTTGCTCAAGACCCCTTTGGGAACTACGCAG 1603
| ||||| |||||||||||||| ||||| |||||||||||||||||||||||||||||||
Sbjct 1553 TAGCTGAAATCTCTAGAAACAGCCTCCTCCTTGCTCAAGACCCCTTTGGGAACTACGCAG 1612
Query 1604 TCCAATTTGTTATAGAACTAAGGATTCCTTCTGCGGTGGCGATGATGCTGGCTCAATTAA 1663
||||||| ||||||||||| ||||||||||||||||||||||||||||||||||| ||||
Sbjct 1613 TCCAATTCGTTATAGAACTGAGGATTCCTTCTGCGGTGGCGATGATGCTGGCTCAGTTAA 1672
Query 1664 AAGGGCATTACGTTCAGCTTTCGATGCAGAAATTCAGTAGCCACATGGTGGAACGATGTC 1723
|||||||||||||||||||||| |||||||||||||||||||||||||| ||| |||||
Sbjct 1673 AAGGGCATTACGTTCAGCTTTCAATGCAGAAATTCAGTAGCCACATGGTCGAAAGATGTT 1732
Query 1724 TCATGCATTGTCCAGAGAGTCGTCCACAAATCGTGCGTGAGCTCGTCTCTGTTCCTCACT 1783
| ||||||||||| ||||||||||||||||| |||||||||||| |||||||||||||||
Sbjct 1733 TGATGCATTGTCCCGAGAGTCGTCCACAAATTGTGCGTGAGCTCATCTCTGTTCCTCACT 1792
Query 1784 TTGATCAGCTTCTTCAAGACCCTTACGCAAATTTCGTCATCCAAGCCGCTCTTGCTGCCA 1843
|||||||||||||||||||||||||||||||||| |||||||||||||||||||| ||||
Sbjct 1793 TTGATCAGCTTCTTCAAGACCCTTACGCAAATTTTGTCATCCAAGCCGCTCTTGCCGCCA 1852
Query 1844 CAAAGGGTCCACTTCATGCTTCACTAGTGGAAGTCATAAGGCCACATTCGATTCTACGTA 1903
||||||||||| ||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct 1853 CAAAGGGTCCAATTCATGCTTCACTTGTGGAAGTCATAAGGCCACATTCGATTCTACGTA 1912
Query 1904 ATAATCCTTATTGCAAGAGGATTTTCTCGAGGAATCTATTGAAGAAGTG 1952
||||||||||||||||||||||||| |||||||||||| ||||||||||
Sbjct 1913 ATAATCCTTATTGCAAGAGGATTTTTTCGAGGAATCTACTGAAGAAGTG 1961
> Ahg335467 jgi|Araly1|335467|fgenesh1_pg.C_scaffold_1002032
Length=1578
Score = 870 bits (471), Expect = 0.0
Identities = 828/996 (83%), Gaps = 42/996 (4%)
Strand=Plus/Plus
Query 979 AGTCTGCCTAACA-TGTGTGACATT-CAAGGATATGTTTACTTAATGGCTAAAGATCAAC 1036
||||||||||| | | | ||| ||| || |||||||||||||||||||||||||||||||
Sbjct 604 AGTCTGCCTAA-AGTATCTGA-ATTCCAGGGATATGTTTACTTAATGGCTAAAGATCAAC 661
Query 1037 ACGGATGTC-GATTCTTGCAGAGGATTTTCGATGAAGGAACTTCTGTT-GACGCGATGAT 1094
| || || | |||| || |||||||| ||||| || |||| | || || || || ||| |
Sbjct 662 ATGGTTG-CAGATTTTTACAGAGGATCTTCGAAGATGGAAGTGCT-TTAGATGCTATGGT 719
Query 1095 TATATTCAATGAAGTTATTGCTCATGTTGTTGAGCTTATGATGGATCCTTTTGGGAATTA 1154
||| ||||||||||| ||| ||||||||||||||||||||||||||||||||||||||||
Sbjct 720 TATTTTCAATGAAGTGATTCCTCATGTTGTTGAGCTTATGATGGATCCTTTTGGGAATTA 779
Query 1155 CCTGATGCAGAAACTCTTAGATGTTTGTACTGAAGAACAGAGGA-CACAGATCGTGCTCG 1213
| ||||||||||||| ||||||||||||| ||||||||| | || |||||||| | ||
Sbjct 780 CTTGATGCAGAAACTATTAGATGTTTGTAATGAAGAACA-ACGAACACAGATCATACTTA 838
Query 1214 TGG-CAACTG-AGGAGCCTGGTCAACTTATCCGGATATCTCTCAATGCATACGGTACTCG 1271
||| || || || | ||||| || ||||| ||||| || ||||| || |||||||||||
Sbjct 839 TGGTCA-CTTCAGAA-CCTGGACAGCTTATTCGGATTTCGCTCAACGCTTACGGTACTCG 896
Query 1272 AGTTGTCCAAAGATTAGTGGAAACAATCA-GA-AGCGGAAAACAGATTTCTCTGGTGAAA 1329
|||||| || |||||||||||| |||||| || | |||| ||||||||| ||||||||
Sbjct 897 AGTTGTTCAGAGATTAGTGGAATCAATCAAGACAA-GGAAG-CAGATTTCTTTGGTGAAA 954
Query 1330 TTGGCT-TTGAGACCCGGTTTTCTTGATTTGATCAAAGATTTAAATGGAAACCATGTGAT 1388
|| ||| || ||||| || ||||| || | || | ||| ||||||| || ||||||||
Sbjct 955 TTAGCTCTT-AGACCTGGATTTCTCAATCTCATTAGGGATCTAAATGGGAATCATGTGAT 1013
Query 1389 TCAACGTTGCTTGCAA-TGCCTTAGCACTGAAGATAACAAGTTTATCTTTGACGCGGCGA 1447
||||||||||||| || ||||||||||| |||||||| |||| |||||||| | || |
Sbjct 1014 TCAACGTTGCTTG-AAGTGCCTTAGCACAAAAGATAACGAGTTCATCTTTGAAGATGCTA 1072
Query 1448 CAAAGTTCTGCA-CTGAAATCGCAACACATCGACATGGATGTTGTGTGCTACAAAAATGC 1506
|||||||||| | | || || || |||||||||||||||||||||||| |||||||||||
Sbjct 1073 CAAAGTTCTGTATC-GATATTGCGACACATCGACATGGATGTTGTGTGTTACAAAAATGC 1131
Query 1507 ATTGCTTATTCAA-TGAGACAACAACGAGAGAAACT-GATCGCTGAGATCTCTAGAAACA 1564
||||||||||| | || ||| |||| ||||||| || | | |||| ||||| |||||||
Sbjct 1132 ATTGCTTATTCCAGTG-GACTACAAAGAGAGAAGCTTG-TAACTGAAATCTCAAGAAACA 1189
Query 1565 GTCTCCTTC-TTGCTCAAGACCCCTT-TGGGAACTACGCAGTCCAATTTGTTATAGAACT 1622
||||| ||| |||||||||| || || ||||||||| || |||||||| ||| |||||||
Sbjct 1190 GTCTC-TTCCTTGCTCAAGATCC-TTATGGGAACTATGCGGTCCAATTCGTTCTAGAACT 1247
Query 1623 AAGG-ATTCCTTCTGCGGTGGC-GATGATGCTGGCTCAATTAAAAGGGCATTACGTTCAG 1680
||| ||| ||||||| | || | |||||| || || |||||||| ||||| || ||
Sbjct 1248 GAGGGATTT-TTCTGCGATAGCCGC-GATGCTTGCGCAGTTAAAAGGTCATTATGTAGAG 1305
Query 1681 CTTTCGATGCAGAAATTCAGTAGCCACATGGTGGAACGATGTCTCATG-CATTGTCCAGA 1739
||||| ||||||||||||||||| || ||||||||| |||| || | |||||||||||
Sbjct 1306 CTTTCAATGCAGAAATTCAGTAGTCATATGGTGGAAAGATG-CTTAACACATTGTCCAGA 1364
Query 1740 GAGTCGTCCACAAATCGTGCGTGAGCTCGTCTCTGTTCCTCACTTTGATCAG-CTTCTTC 1798
||| ||||| || ||||||||||| ||| ||||||||||||| |||||| | || |||
Sbjct 1365 GAGCCGTCCTCAGATCGTGCGTGAACTCATCTCTGTTCCTCATTTTGAT-ATTCTAATTC 1423
Query 1799 AAGACCCTTACGCAAA-TTTCGTCATCCAAGCCGCTCTTGCTGCCACAAAGGGTCCACTT 1857
|||||||||| || || ||| ||||||||||| |||||||||| ||| |||||| |||||
Sbjct 1424 AAGACCCTTATGCTAACTTT-GTCATCCAAGCTGCTCTTGCTGTCACCAAGGGTTCACTT 1482
Query 1858 CATGCTTCACTAGTGGAAGTCATAAGGCCACATTCGATTCTACGTAATAATCCTTATTGC 1917
||||| |||| || |||||||||||||| || |||||||||||||| ||||||||||||
Sbjct 1483 CATGCCACACTCGTTGAAGTCATAAGGCCTCACTCGATTCTACGTAACAATCCTTATTGC 1542
Query 1918 AAGAGGATTTTCTCGAGGAATCTATTGAAGAAGTGA 1953
|| ||||||||||| || ||||| |||||||| |||
Sbjct 1543 AAAAGGATTTTCTCAAGAAATCTCTTGAAGAATTGA 1578
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 73399902115
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5