BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT1G78170.1
Length=920
Score E
Sequences producing significant alignments: (Bits) Value
Ahg927222 jgi|Araly1|927222|scaffold_202783.1 970 0.0
Ahg335470 jgi|Araly1|335470|fgenesh1_pg.C_scaffold_1002035 204 1e-51
> Ahg927222 jgi|Araly1|927222|scaffold_202783.1
Length=696
Score = 970 bits (525), Expect = 0.0
Identities = 657/715 (92%), Gaps = 31/715 (4%)
Strand=Plus/Plus
Query 76 GTGGAAACCAAGACTAATTAAGGCTAATGGTTTCTCGACAAGAAGGAACCCTCTACTCTA 135
|||||||||||| |||||||| |||||||||||||||||||||||||||||||||||
Sbjct 1 GTGGAAACCAAG----ATTAAGGCAAATGGTTTCTCGACAAGAAGGAACCCTCTACTCTA 56
Query 136 GAAAGAGGGATTTCACAGTCTGTGGAGAAGAGTTTCACAATTCATTCAAGAAGAGCAAAC 195
||||||||||||||||||||| |||||||||||||||||||||||||||||||| |||||
Sbjct 57 GAAAGAGGGATTTCACAGTCTATGGAGAAGAGTTTCACAATTCATTCAAGAAGATCAAAC 116
Query 196 AAGAAGATCAATCACAGAGCACTCTGTTCAATGAACGACCAAAATCGGAGAGTATGAGAT 255
|||||||||||||||||||||| |||||||||||||||||||| || |||||||||||||
Sbjct 117 AAGAAGATCAATCACAGAGCACCCTGTTCAATGAACGACCAAACTCAGAGAGTATGAGAT 176
Query 256 CAATTACCTTTGATTTTGAACTTCATCTCCAC-ACTCCTCTACCATCAGATTGGCAAACT 314
|||||||||||||||||||||||||||||||| || ||||||||||||||||||||||||
Sbjct 177 CAATTACCTTTGATTTTGAACTTCATCTCCACAAC-CCTCTACCATCAGATTGGCAAACT 235
Query 315 AAGGGATATTCAAGAACATCTGATGAGCATAGGGCATATC-CCAAAGATCCAGTGATTTT 373
|||||||||||||||||||||||||| ||||||||||| | ||||||||||||||||| |
Sbjct 236 AAGGGATATTCAAGAACATCTGATGATCATAGGGCATA-CACCAAAGATCCAGTGATTGT 294
Query 374 TGGACAACCTAAGATGAGCCTAGACCTTGAGCTGAACCTTTCACCTTCAGGTTCACCTTC 433
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 295 TGGACAACCTAAGATGAGCCTAGACCTTGAGCTGAACCTTTCACCTTCAGGTTCACCTTC 354
Query 434 ACGAACCACAACGA--A-GAAATATGAATCCTCCTC-AATTCACAATGAAACAGTATCAT 489
||||||||||| || | |||| |||||| |||||| || ||||||||||||||| |
Sbjct 355 ACGAACCACAATGATCAAGAAAGATGAATACTCCTCGAAC-CACAATGAAACAGTA--A- 410
Query 490 CATCAAAGATTAAAGTTTTGACGAACACAAGTAAGAAGAGCATAATTGGGACAGGACTAA 549
|||||||| ||||| |||||||||| ||||||||||||| | | |||
Sbjct 411 CATCAAAGGGTAAAGATTTGACGAACCCAAGTAAGAAGAG-------G--A------TAA 455
Query 550 GTCGATCACCATCCTGGCTAGCGTTTGAAGGTGGTGATGATAACGATGTTGATCACAAGG 609
||||||| || |||||||||||||||||||||||||||||| | || |||||||||||||
Sbjct 456 GTCGATCTCCGTCCTGGCTAGCGTTTGAAGGTGGTGATGATGATGACGTTGATCACAAGG 515
Query 610 GGCAAGAGATGGTAACAACAGTTTGCATGAAATGCCACATGCTGGTTATGTTGTGTACAT 669
| ||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct 516 GACAAGAGATGGTAACAACAGTTTGCATGAAATGCCACATGCTGGTTATGTTGTGCACAT 575
Query 670 CAACTCCTGTTTGTCCCAACTGCAAGTTCATGCACCCACACGATCACAGCTCTACAAAAC 729
|||||||||||||||| ||||||||||||||||||||||| |||||||||||||||||||
Sbjct 576 CAACTCCTGTTTGTCCTAACTGCAAGTTCATGCACCCACATGATCACAGCTCTACAAAAC 635
Query 730 TGTTTAAACCATCAAATTTGCTTAGGCTTCTATGCTAGGCTCTTTCAAGGTTACT 784
|||||||||||||||||||||||||||| |||||||||||||| |||||||||||
Sbjct 636 TGTTTAAACCATCAAATTTGCTTAGGCTCCTATGCTAGGCTCTCTCAAGGTTACT 690
> Ahg335470 jgi|Araly1|335470|fgenesh1_pg.C_scaffold_1002035
Length=609
Score = 204 bits (110), Expect = 1e-51
Identities = 191/229 (83%), Gaps = 9/229 (4%)
Strand=Plus/Plus
Query 542 AGGACTAAGTCGATCACCATCCTGGCTAGCGTTTGAAGGTGGTGATGATAACGATG-TTG 600
||| ||||||||||| || || ||||||||||||||||||| ||||||| |||| | |
Sbjct 387 AGGGCTAAGTCGATCCCCGTCTTGGCTAGCGTTTGAAGGTGATGATGAT---GATGATAG 443
Query 601 ATCACAAGGGGCAAGAGATGGTAACAACAGTTTGCATGAAATGCCACATGCTGGTTATGT 660
||| ||| |||||||||||||||||||||||||||||| || |||||||||||||||
Sbjct 444 -TCAGAAGAAGCAAGAGATGGTAACAACAGTTTGCATGAAGTGTCACATGCTGGTTATGC 502
Query 661 TGTGTACATCAACTCCTGTTTGTCCCAACTGCAAGTTCATGCACCCACACGATCACAGCT 720
| |||| |||||||| ||| ||||| |||||||| |||||||||| | | ||||| ||||
Sbjct 503 TCTGTAAATCAACTCTTGTATGTCCTAACTGCAAATTCATGCACCAAGATGATCATAGCT 562
Query 721 CTACAAAACTGTTTAA-ACCATCAAATTTGCTTAGGCTTCTA-TGCTAG 767
| ||||||| |||||| || | ||||||| ||| ||| || ||||||
Sbjct 563 CCACAAAACAGTTTAAGACTTT-AAATTTGTTTAAGCT-CTTGTGCTAG 609
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 34120010715
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5