BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT1G78172.1
Length=288
Score E
Sequences producing significant alignments: (Bits) Value
Ahg316726 jgi|Araly1|316726|fgenesh1_pm.C_scaffold_2001759 433 4e-121
> Ahg316726 jgi|Araly1|316726|fgenesh1_pm.C_scaffold_2001759
Length=288
Score = 433 bits (234), Expect = 4e-121
Identities = 268/284 (94%), Gaps = 4/284 (1%)
Strand=Plus/Plus
Query 7 AGCAAAGACGAATTTTCCCGAGATCTCA-CTGCGATTCGCTGCGCCAGAGCTACGATGCT 65
||||||||||||||||||||||||| | ||||||||||||||||||||||| |||||||
Sbjct 7 AGCAAAGACGAATTTTCCCGAGATC-GAGCTGCGATTCGCTGCGCCAGAGCTTCGATGCT 65
Query 66 TCTCTATTCACTTG-CATCATCTCGCACAATCGATTCCGCCGGCGAGAAGCAGGAGAAAG 124
||||||||||| || |||| || |||||||||||| ||||||||||||||||||||||||
Sbjct 66 TCTCTATTCAC-TGTCATCGTCCCGCACAATCGATACCGCCGGCGAGAAGCAGGAGAAAG 124
Query 125 GAGAAACGCGAAGAGAGATAGAGGATCTGAGGAGAAAGCTTACCATGGTGAAGATAAAGA 184
|||||||||||||||| | ||||||||||| ||||||||||||||||| ||||| |||||
Sbjct 125 GAGAAACGCGAAGAGAAACAGAGGATCTGAAGAGAAAGCTTACCATGGAGAAGAAAAAGA 184
Query 185 TGAATCGGATTAAGCTTTGCGGATTGATGGAACTGCTTCTTCTCGTCTTTTTGGTACTGT 244
||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct 185 TGAATCGGATTAAGCTTTGCGGATTGATGGAACTGCTTCTTCTCGTCGTTTTGGTACTGT 244
Query 245 TGCTTTCCACTTTCTTCCTTGTCTTCTTCCTTGGATCTACTTGA 288
||||||||||||||||||| ||||||||||||||||||||||||
Sbjct 245 TGCTTTCCACTTTCTTCCTCGTCTTCTTCCTTGGATCTACTTGA 288
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 10073075496
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5