BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT1G78180.1
Length=1378
Score E
Sequences producing significant alignments: (Bits) Value
Ahg476986 jgi|Araly1|476986|fgenesh2_kg.2__2116__AT1G78180.1 1975 0.0
> Ahg476986 jgi|Araly1|476986|fgenesh2_kg.2__2116__AT1G78180.1
Length=1292
Score = 1975 bits (1069), Expect = 0.0
Identities = 1203/1268 (95%), Gaps = 8/1268 (1%)
Strand=Plus/Plus
Query 1 ATCCAAATGTCAGGACTCGATATCTATCCTCACGATCCTTCTTCTTCTTCTTCGACCAGC 60
|||||||||||||||||||||||||||||||||||| | | |||||||||||| | |||
Sbjct 1 ATCCAAATGTCAGGACTCGATATCTATCCTCACGAT-C-T-TTCTTCTTCTTC-A--AGC 54
Query 61 TCTATCGATCTATCCAATGAAGCTTTCTTCAGCACCGGTGGTCTGTTTCTCGAACCACCA 120
|||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct 55 TCTATCGATCTATCCAATGAAGCTTTCTTCAGCACCGGTGGTTTGTTTCTCGAACCACCA 114
Query 121 GGCGTTTCCTCTTCCTTCTTCGACTCTATCTCCTCCAAATGCTCCGAC-TCAGAGCCACT 179
||| ||||||||| ||||||||||| ||||||||||||||||||||| || || || |
Sbjct 115 GGCAATTCCTCTTCTTTCTTCGACTCGATCTCCTCCAAATGCTCCGACTTC-GAACCGGT 173
Query 180 GCATTTCCCCGGTTACTGGAGAAACAAAACCCGTCTCCGCTCCGGTAAGAACTTTATGTT 239
|||||| ||||||||||||||||||||||| ||||| ||||| |||||| ||| |||||
Sbjct 174 GCATTTTCCCGGTTACTGGAGAAACAAAACTCGTCTTCGCTCAAGTAAGACCTTGATGTT 233
Query 240 CCTGTCCGTGAGCTTGAGTAAAGACAGATCTGAGCAGCAATGTAAGAAGGCTTTGGCGCA 299
|||||||||||||||||||||||||||||| |||||||||| || || |||||||||||
Sbjct 234 TCTGTCCGTGAGCTTGAGTAAAGACAGATCTAAGCAGCAATGCAAAAATGCTTTGGCGCA 293
Query 300 AAACGACGAAATTCCCGGCAAGGATAATCGAAAACGAAGTGTTATCGGTGGCGTGAGGAG 359
||||| | ||||||||||||| |||| | |||||||||||||||||||||| | ||||||
Sbjct 294 AAACGGCAAAATTCCCGGCAAAGATATTGGAAAACGAAGTGTTATCGGTGGAGGGAGGAG 353
Query 360 ACGCGGGACCATGAACACAAGGAAGCATCTCTGGGCTGGTGCTGTAGCTGCCATGGTTTC 419
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 354 ACGCGGGACCATGAACACAAGGAAGCATCTCTGGGCTGGTGCTGTAGCTGCCATGGTTTC 413
Query 420 AAAAACATTCTTAGCTCCACTTGAGAGACTAAAGCTTGAATATACAGTTCGTGGTGAACA 479
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 414 AAAAACATTCTTAGCTCCACTTGAGAGACTAAAGCTTGAATATACAGTTCGTGGTGAACA 473
Query 480 GAGGAACTTGTTGGTGGTTGCTAAGTCAATTGCAACTACACAGGGCTTGACTGGATTCTG 539
|||||||||||||||||| |||||||||||||| ||||||||||||||||||||||||||
Sbjct 474 GAGGAACTTGTTGGTGGTCGCTAAGTCAATTGCCACTACACAGGGCTTGACTGGATTCTG 533
Query 540 GAAAGGTAATTTGCTCAATGTTCTTCGAACTGCTCCTTTCAAAGCCGTCAATTTTTGTGC 599
|||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct 534 GAAAGGTAATTTGCTCAATGTTCTCCGAACTGCTCCTTTCAAAGCCGTCAATTTTTGTGC 593
Query 600 CTATGATACCTATAGAAAGCAATTGCTTAAAATCGCTGGGAATCAAGAAGCAACCAACTT 659
||| ||||||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct 594 CTACGATACCTATAGAAAGCAATTGCTTAAACTCGCTGGGAATCAAGAAGCAACCAACTT 653
Query 660 TGAAAGATTCGTTGCTGGTGCCGCTGCTGGGATTACTGCTACTGTGCTCTGCTTGCCACT 719
|||||||||||||||||| || ||||||||||||||||||||||||||||||||||||||
Sbjct 654 TGAAAGATTCGTTGCTGGAGCTGCTGCTGGGATTACTGCTACTGTGCTCTGCTTGCCACT 713
Query 720 CGACACTATACGAACCAAACTAGTGGCTCGGGGTGGAGAAGCCTTGGGGGGAATCGGAGG 779
|||||||||||||||||||||||||||||||||||||||||||||||| ||||||| |||
Sbjct 714 CGACACTATACGAACCAAACTAGTGGCTCGGGGTGGAGAAGCCTTGGGTGGAATCGCAGG 773
Query 780 AGCTTTTCGGTATATGATCCAAACAGAAGGGTTGTTCTCCCTCTACAAGGGTCTAGTGCC 839
|||||||| ||||||||||||||| ||||||||||| || || |||||||||||||| ||
Sbjct 774 AGCTTTTCAGTATATGATCCAAACCGAAGGGTTGTTGTCACTTTACAAGGGTCTAGTCCC 833
Query 840 GTCCATAGCAAGCATGGCTCTGTCCGGTGCAGTTTTCTATGGCGTTTACGACATCCTTAA 899
|||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct 834 GTCCATAGCAAGCATGGCTCTGTCTGGTGCAGTTTTCTATGGCGTTTACGACATCCTTAA 893
Query 900 GTCATCGTTTCTGCATACACCAGAAGGCCGGAAAAGACTGATAGACATGAAGCAGCAGGG 959
||||| | |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 894 ATCATCCTATCTGCATACACCAGAAGGCCGGAAAAGACTGATAGACATGAAGCAGCAGGG 953
Query 960 ACAAGAACTCAATGCTCTAGACAGGCTCGAGTTAGGACCCATCAGAACTCTCATGTACGG 1019
||| |||||||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct 954 ACATGAACTCAATGCTCTAGACCGGCTCGAGTTAGGACCCATCAGAACTCTCATGTACGG 1013
Query 1020 TGCTATAGCAGGTGCTTGTACTGAAGTAGCCACTTATCCTTTCGAAGTAGTGAGACGACA 1079
|||||| |||||||||||||||||||| |||||||||||||| |||||||||||||||||
Sbjct 1014 TGCTATCGCAGGTGCTTGTACTGAAGTGGCCACTTATCCTTTTGAAGTAGTGAGACGACA 1073
Query 1080 GCTTCAGATGCAGATGGGTAAAAACAAGCTCAATGCTTTAGCTATGGGATTCAATATCAT 1139
||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct 1074 GCTTCAGATGCAGATGGGTAAAAACAAGCTCAATGCTTTAGCTATGGGATTCAGTATCAT 1133
Query 1140 TGAAAGAGGAGGGATCCCAGCTTTATACGCTGGACTTTTACCTAGCTTGCTCCAGGTATT 1199
||| |||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1134 TGAGAGAGGAGGCCTCCCAGCTTTATACGCTGGACTTTTACCTAGCTTGCTCCAGGTATT 1193
Query 1200 GCCTTCGGCTTCAATAAGTTACTTTGTCTACGAGTGTATGAAGATAGTACTTAAAGTAGA 1259
|||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct 1194 GCCTTCGGCTTCAATAAGTTACTTTGTCTACGAGTGTATGAAGATAGTGCTTAAAGTAGA 1253
Query 1260 ATAACAAG 1267
|| |||||
Sbjct 1254 ATGACAAG 1261
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 51580306701
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5