BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: halleri_transcript_ahg.fa
           32,672 sequences; 38,939,717 total letters



Query= AT1G78190.1

Length=375
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  Ahg927225 jgi|Araly1|927225|scaffold_202786.1                        527    2e-149


> Ahg927225 jgi|Araly1|927225|scaffold_202786.1
Length=420

 Score =  527 bits (285),  Expect = 2e-149
 Identities = 346/376 (92%), Gaps = 2/376 (1%)
 Strand=Plus/Plus

Query  1    ATGAGGTTGATAGTGCACAATATGTTGTCTTGCAACATTAAAGGAGTGGTCAACAAGTTT  60
            |||||||||||||||||||| ||||||||||||||||||||||||||||| |||||||||
Sbjct  23   ATGAGGTTGATAGTGCACAACATGTTGTCTTGCAACATTAAAGGAGTGGTTAACAAGTTT  82

Query  61   CCTCTGCGAATCGAAGCGGAGAAGGTAA-CAGTAAAAGAGGTTGATTTCAACCCGGATTT  119
            |||||||| |||||| | |||||| ||| | ||||||||||| |||||||||||||||||
Sbjct  83   CCTCTGCGTATCGAACCCGAGAAGATAATC-GTAAAAGAGGTCGATTTCAACCCGGATTT  141

Query  120  TCTCAGGTACATGTTTGCCAAAATCGATTGGAAGGCTCTAGTGGATGGTGCACGTTCTAT  179
            ||||| | ||||||||||||||||||||||||| ||||||||||| | ||||| ||||||
Sbjct  142  TCTCAAGCACATGTTTGCCAAAATCGATTGGAAAGCTCTAGTGGACGATGCACTTTCTAT  201

Query  180  GGAATACACCGAACTTCCCGATAACGCACCAGACACGACGACGCTGGAATCTGACGAAAC  239
            |||||||||||||||||||||||||||||| ||||  | ||||||||||||||||||| |
Sbjct  202  GGAATACACCGAACTTCCCGATAACGCACCGGACATAAAGACGCTGGAATCTGACGAATC  261

Query  240  ATTCCTAAGGAAATTCCACCACGCGTTGCTCGAGCTTCACCTTGAGGAAGGCTCACTCGT  299
            ||||||  ||||||||||||||||||||||||||||||| ||||| ||||||||||||||
Sbjct  262  ATTCCTCGGGAAATTCCACCACGCGTTGCTCGAGCTTCATCTTGAAGAAGGCTCACTCGT  321

Query  300  CTGCCCAGAAACCGGTAGGAAGTTTTCGGTTAGCAAAGGAATTCCCAATATGCTTCTCCA  359
            ||||||||||||||||||||||||| |||||| ||||||||| |||||||||||||||||
Sbjct  322  CTGCCCAGAAACCGGTAGGAAGTTTCCGGTTAACAAAGGAATCCCCAATATGCTTCTCCA  381

Query  360  CGAAGATGAAGTTTAA  375
            ||| || || ||||||
Sbjct  382  CGAGGACGAGGTTTAA  397



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 13392611739


  Database: halleri_transcript_ahg.fa
    Posted date:  Sep 25, 2014  2:02 AM
  Number of letters in database: 38,939,717
  Number of sequences in database:  32,672



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5