BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT1G78200.1
Length=1194
Score E
Sequences producing significant alignments: (Bits) Value
Ahg476988 jgi|Araly1|476988|fgenesh2_kg.2__2118__AT1G78200.2 1635 0.0
> Ahg476988 jgi|Araly1|476988|fgenesh2_kg.2__2118__AT1G78200.2
Length=1183
Score = 1635 bits (885), Expect = 0.0
Identities = 1011/1070 (94%), Gaps = 15/1070 (1%)
Strand=Plus/Plus
Query 116 AATTCAGAAT-CAAATGCCCAAGATCTGCTGCTCTCGTTCCGCTACACAAGTTGTGGTAG 174
|||||||||| |||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct 119 AATTCAGAATCCAAATGCCCAAGATCTGCTGTTCTCGTTCCGCTACACAAGTTGTGGTAG 178
Query 175 CACAAAAATCAAACTCGGGTAAAGGAAGAAACGGTGAAGGAGGAATCAAGTATGGATTTA 234
||||||||||||||||||||||||| |||||| |||||||| ||||||||||||||||||
Sbjct 179 CACAAAAATCAAACTCGGGTAAAGGGAGAAACAGTGAAGGAAGAATCAAGTATGGATTTA 238
Query 235 GTTTGATAAAAGGGAAATCTAACCATTCAATGGAGGATTATCATGTTGCTAAGTTTACCA 294
|||||||||| ||||||||| |||||||||||||||||||||||||||||||||||| |
Sbjct 239 GTTTGATAAAGGGGAAATCTGACCATTCAATGGAGGATTATCATGTTGCTAAGTTTATGA 298
Query 295 ATTTCAATGGCAATGAATTGGGGCTTTTTGCAATCTTTGATGGTCATAAAGGTGATCA-T 353
||||||||||||||||||||||||||||||| |||||||||||||||||||||||| | |
Sbjct 299 ATTTCAATGGCAATGAATTGGGGCTTTTTGCTATCTTTGATGGTCATAAAGGTGAT-AGT 357
Query 354 GTTGCTGCTTATCTGCAGAAACATCTCTTCTCTAATATCCTTAAAGATGGAGAGTTCTTG 413
|| ||||||||| |||||||||| ||||||||||||||||| ||||||||||||||||||
Sbjct 358 GTAGCTGCTTATTTGCAGAAACACCTCTTCTCTAATATCCTCAAAGATGGAGAGTTCTTG 417
Query 414 GTTGATCCTCGAAGAGCAATTGCGAAAGCTTATGAGAATACAGATCAAAAGATTTTAGCA 473
|||||||||||||||||||||||||||||||||||||||||||| |||| ||||||||||
Sbjct 418 GTTGATCCTCGAAGAGCAATTGCGAAAGCTTATGAGAATACAGACCAAATGATTTTAGCA 477
Query 474 GATAATAGAACGGATTTAGAGAGTGGTGGTTCGACTGCTGTGACTGCGATTTTGATCAAT 533
|||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct 478 GATAATAGAACGGATTTAGAGAGTGGCGGTTCGACTGCTGTGACTGCGATTTTGATCAAT 537
Query 534 GGGAAAGCTTTGTGGATAGCTAATGTTGGTGATTCACGAGCTATTGTTTCTAGTCGAGGT 593
||||||| ||||||| ||||||||||||| ||||| || |||||||||||||||||||||
Sbjct 538 GGGAAAGTTTTGTGGGTAGCTAATGTTGGCGATTCGCGTGCTATTGTTTCTAGTCGAGGT 597
Query 594 AAAGCAAAACAGATGAGTGTTGATCATGATCCTGATGATGATACTGAGAGGAGTATGATT 653
|||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct 598 AAAGCAAAACAGATGAGTGTAGATCATGATCCTGATGATGATACTGAGAGGAGTATGATT 657
Query 654 GAGAGTAAAGGTGGATTTGTGACCAACAGACCAGGTGATGTTCCTCGAGTGAACGGTTTG 713
||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct 658 GAGAGTAAAGGTGGATTTGTGACCAACAGGCCAGGTGATGTTCCTCGAGTGAACGGTTTG 717
Query 714 TTAGCGGTCTCTCGTGTCTTTGGAGATAAAAACCTTAAAGCATATTTGAACTCAGAGCCT 773
||||| ||||||||||||||||| || |||||||| ||||||||||||||||||||||||
Sbjct 718 TTAGCTGTCTCTCGTGTCTTTGGTGACAAAAACCTCAAAGCATATTTGAACTCAGAGCCT 777
Query 774 GAGATTAAGGACGTAACCATTGATAGTCACACAGATTTTCTTATTCTGGCTAGTGACGGT 833
|| |||||||| ||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct 778 GACATTAAGGATGTAACCATTGATAGTCACACAGATTTTCTTATTATGGCTAGTGACGGT 837
Query 834 ATTTCGAAGGTGATGTCAAACCAAGAAGCAGTTGATGTAGCTAAGAAGTTGAAAGATCCA 893
||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct 838 ATTTCGAAGGTGATGTCAAACCAAGAAGCAGTTGACATAGCTAAGAAGTTGAAAGATCCA 897
Query 894 AAGGAAGCGGCGAGGCAAGTAGTTGCTGAAGCATTGAAAAGAAACAGCAAGGATGACATA 953
|||||||| |||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct 898 AAGGAAGCAGCGAGGCAAGTAGTTGCTGAAGCATTGAAAAGAAACAGTAAGGATGACATA 957
Query 954 TCTTGCATTGTTGTCCGGTTTAGATGATAACCAAGAAGACTCAGCTTATATTGGATTTGG 1013
|||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct 958 TCTTGCATTGTTGTCCGGTTTAGATGATAACCAAGAAGACGCAGCTTATATTGGATTTGG 1017
Query 1014 AGCTTCCTTT-GCTTCACCATGATTCTTTTGGGGTCCGGTTTAGTTTGATTCTGGGTCTT 1072
||||| |||| ||||||||| |||| |||||||||||||||||||| ||| |||| ||||
Sbjct 1018 AGCTTGCTTTTGCTTCACCAAGATTATTTTGGGGTCCGGTTTAGTTCGAT-CTGGTTCTT 1076
Query 1073 GGTTACTTGTGCATTTTTAAGAACATG-AGTTTGAATAGGACTATTAT-ATATTA--CTA 1128
|||||||||||||||| ||||||| | ||||| ||||||| |||||| |||||| |||
Sbjct 1077 CGTTACTTGTGCATTTTCAAGAACA-GCAGTTT-AATAGGAATATTATTATATTATACTA 1134
Query 1129 GTTTGACAAACCAGAT-ATTT-TATCATATAAATT-ACATGAAAAGAATA 1175
|||||||||||||||| | || ||||||| ||||| ||||||||||||||
Sbjct 1135 GTTTGACAAACCAGATGAGTTATATCATA-AAATTTACATGAAAAGAATA 1183
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 44565689973
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5