BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT1G78210.1
Length=1130
Score E
Sequences producing significant alignments: (Bits) Value
Ahg339978 jgi|Araly1|339978|fgenesh1_pg.C_scaffold_2002077 1434 0.0
> Ahg339978 jgi|Araly1|339978|fgenesh1_pg.C_scaffold_2002077
Length=948
Score = 1434 bits (776), Expect = 0.0
Identities = 888/942 (94%), Gaps = 7/942 (1%)
Strand=Plus/Plus
Query 82 ATGACAGGTTGCTTTAGCTTGTCTGAAGCATTAGAACGAACTTACAAATCCGGGTTCAAA 141
|||||||||| |||||||||||| ||||| |||||||||||||||||||||| ||||||
Sbjct 1 ATGACAGGTTTTTTTAGCTTGTCTCAAGCAATAGAACGAACTTACAAATCCGGTTTCAAA 60
Query 142 AGATCCGGTCTACGACCCGTAACCATCGACTTGAAAGATGGAACCGTAGTCAACTTTTGG 201
||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct 61 AGATCCGGTCTACGACCCGTAACCATCGATTTGAAAGATGGAACCGTAGTCAACTTTTGG 120
Query 202 GTATCCAAAACCAAACCCGAATCCAAACCCAAACCTAATCTCCTCCTCATCCACGGCCTC 261
|||||||||||| ||||||| |||||||||||||| ||||||||||||||||||||||||
Sbjct 121 GTATCCAAAACCCAACCCGAGTCCAAACCCAAACCCAATCTCCTCCTCATCCACGGCCTC 180
Query 262 GGAGCTACTGCCATCTGGCAATGGTACGACGTAGCTCGCCGTCTCTCACGTTATTTCAAC 321
|||||||||||||||||||||||||||||||||||||| |||||||| ||| ||||||||
Sbjct 181 GGAGCTACTGCCATCTGGCAATGGTACGACGTAGCTCGACGTCTCTCTCGTCATTTCAAC 240
Query 322 CTCTACATCCCCGACCTAGTCTTCTTCGGCGGATCTTCCACGACCCGACCCGAAAGATCC 381
||||| ||||||||||| ||||||||||||||||| ||||||||||||||||||||||||
Sbjct 241 CTCTATATCCCCGACCTCGTCTTCTTCGGCGGATCCTCCACGACCCGACCCGAAAGATCC 300
Query 382 GATAT-TTTCCAAGCCCAAACACTCATGCGGGCCTTAGAAGCCCAATCCGTCAAAAAGTT 440
||||| ||| || |||||||||||||||||||||||||||||||||||||| ||||| ||
Sbjct 301 GATATCTTT-CAGGCCCAAACACTCATGCGGGCCTTAGAAGCCCAATCCGTGAAAAAATT 359
Query 441 TAGCCTCGTCGGTCTTAGCTACGGCGGATTCGTTGGTTATCGAATGGCGTCGATGTACGC 500
|||||||||||||||||||||||||||||||| |||||||| |||||| ||||||||||
Sbjct 360 CAGCCTCGTCGGTCTTAGCTACGGCGGATTCGTGGGTTATCGGATGGCGGCGATGTACGC 419
Query 501 AGACGCGGTGGAGAAG-GTGGTGATATGCTGCGCCGCCGTGTGCGTGGAGGAGAAAGATA 559
|||||| |||||| || || ||||||||||||||||||||||||||||||||||||||||
Sbjct 420 AGACGCCGTGGAG-AGAGTTGTGATATGCTGCGCCGCCGTGTGCGTGGAGGAGAAAGATA 478
Query 560 TGAAAGCCGGTGTTTTCAAGGTGTCGGATCTTGATGAAGCTTCGAAGATTCTTGTGCCGG 619
|||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 479 TGAAAGCCGGCGTTTTCAAGGTGTCGGATCTTGATGAAGCTTCGAAGATTCTTGTGCCGG 538
Query 620 AGTCTGTGAAAAAGCTCCGGGAACTTATGGGTTACATATTTTACAAACCGGCGTTGGCAA 679
| ||||||||||||||| ||||||||||||||||||| |||||||| ||||||||||| |
Sbjct 539 AATCTGTGAAAAAGCTCAGGGAACTTATGGGTTACATCTTTTACAAGCCGGCGTTGGCGA 598
Query 680 GACTGGTTCCTACTTGTCTTCTCCATGATTTCATCGAACATGCTTTGACAAGAGATAATA 739
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 599 GACTGGTTCCTACTTGTCTTCTCCATGATTTCATCGAACATGCTTTGACAAGAGATAATA 658
Query 740 TGGAAGAGAAGAGAGAACTGATCAAAGCCATACCAAAAGACAGAATAATCTCAGAGATTC 799
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 659 TGGAAGAGAAGAGAGAACTGATCAAAGCCATACCAAAAGACAGAATAATCTCAGAGATTC 718
Query 800 CAAAGCTCAAACAGCCAACATTGATAATATGGGGAGAGCATGATCAAGTGTTCCCATTGG 859
||||||||| ||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct 719 CAAAGCTCACACAGCCAACGTTGATAATATGGGGAGAGCATGATCAAGTGTTCCCATTGG 778
Query 860 AGATGGGCAAGAGACTTGAGAAGCATGTAGGAGATAATGGGAAACTCGTTATCATCAAGA 919
|||||||||||||||||||||| ||| |||| |||||||||| ||||| ||||||||||
Sbjct 779 AGATGGGCAAGAGACTTGAGAAACATATAGGCGATAATGGGAGGCTCGTCATCATCAAGA 838
Query 920 GAACTGGTCATATCTTTAACTTCGAGAAACCTAAAAAGTTTATCAAACTTCTCAAATCTT 979
||||||||||||||||||||||||||| ||| |||| |||| | ||||| ||||||||||
Sbjct 839 GAACTGGTCATATCTTTAACTTCGAGAGACCCAAAACGTTTCTTAAACTGCTCAAATCTT 898
Query 980 TTCTTCTAGAGACTAGTAAACCACAGATTCCTGTCTCTAATG 1021
||||| | ||||||| || |||||||||||| |||||||||
Sbjct 899 TTCTTTTGGAGACTA--AA-CCACAGATTCCTATCTCTAATG 937
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 42125823285
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5