BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT1G78220.1
Length=738
Score E
Sequences producing significant alignments: (Bits) Value
Ahg927229 jgi|Araly1|927229|scaffold_202790.1 617 3e-176
> Ahg927229 jgi|Araly1|927229|scaffold_202790.1
Length=956
Score = 617 bits (334), Expect = 3e-176
Identities = 382/405 (94%), Gaps = 3/405 (1%)
Strand=Plus/Plus
Query 320 CTCATCTCATACCATCAACTACTACTAATGTCGAATCAATTGTCCTTTTTAACAGAGTGA 379
|||||||||||||||| | ||||||||||||||||||| |||| |||||| |||| |||
Sbjct 388 CTCATCTCATACCATC-A--ACTACTAATGTCGAATCAACTGTCTTTTTTATCAGAATGA 444
Query 380 AAGGAGATTATTTTCGATATATGGCAGAGTTTGGTTCTGATGCTGAACGTAAAGAAAATG 439
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 445 AAGGAGATTATTTTCGATATATGGCAGAGTTTGGTTCTGATGCTGAACGTAAAGAAAATG 504
Query 440 CAGATAATTCTCTAGATGCATATAAGGTTGCAATGGAAATGGCAGAGAATAGTTTAGCAC 499
| ||||||||||| || |||||||||||||||||||||||||||||||||||||||||||
Sbjct 505 CGGATAATTCTCTGGAAGCATATAAGGTTGCAATGGAAATGGCAGAGAATAGTTTAGCAC 564
Query 500 CCACCAATATGGTTAGACTTGGATTGGCTTTAAATTTCTCGATATTCAATTATGAGATCC 559
|||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct 565 CCACCAATATGGTTAGACTTGGATTGGCTTTAAACTTCTCGATATTCAATTATGAGATCC 624
Query 560 ATAAATCTATTGAAAGCGCATGTAAATTGGTTAAGAAAGCTTACGATGAAGCAATCACTG 619
||||||||||||||||||||| |||||||| |||||||||||||||||||||||| |||
Sbjct 625 TTAAATCTATTGAAAGCGCATGCAAATTGGTCAAGAAAGCTTACGATGAAGCAATCGCTG 684
Query 620 AACTCGATGGCCTTGACAAGAATATATGCGAAGAGAGCATGTATATCATAGAGATGCTTA 679
|||||||||||||||||||||| | ||| ||||||||||| || ||||||||||||||||
Sbjct 685 AACTCGATGGCCTTGACAAGAAAAAATGTGAAGAGAGCATATACATCATAGAGATGCTTA 744
Query 680 AATACAATCTTTCTACGTGGACTTCAGGCGATGGTAATGGTAATA 724
|||||||||||||| | ||||||| ||||||||||||||||||||
Sbjct 745 AATACAATCTTTCTGCATGGACTTTAGGCGATGGTAATGGTAATA 789
Score = 521 bits (282), Expect = 2e-147
Identities = 312/327 (95%), Gaps = 0/327 (0%)
Strand=Plus/Plus
Query 1 ATGGAGAATGAGAGAGAAAAGCTGATTTACTTGGCTAAGCTCGGTTGCCAAGCTGGAAGA 60
|||||||||||||||||||| || ||||||||||||||||||| |||| ||||||||||
Sbjct 21 ATGGAGAATGAGAGAGAAAATCTTATTTACTTGGCTAAGCTCGCCTGCCTAGCTGGAAGA 80
Query 61 TATGATGATGTGATGAAATCGATGAGAAAAGTATGTGAGCTTGATATAGAGCTAAGTGAA 120
||||||||| |||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct 81 TATGATGATATGATGAAATCGATGAGAAAAGTATGTGAGCATGATATAGAGCTAAGTGAA 140
Query 121 GAGGAAAGAGACCTACTAACAACTGGATACAAGAATGTCATGGAGGCTAAGAGAGTTTCA 180
|||||||||||||||||||||||||| |||||||||||||||||| ||||||||| ||||
Sbjct 141 GAGGAAAGAGACCTACTAACAACTGGGTACAAGAATGTCATGGAGACTAAGAGAGCTTCA 200
Query 181 TTGAGAGTAATATCATCCATTGAAAAAATGGAAGACTCGAAAGGAAACGACCAAAATGTG 240
||||||||||||||||| ||||||||| |||||||||||||||||||||||||||||||
Sbjct 201 TTGAGAGTAATATCATCTATTGAAAAATTGGAAGACTCGAAAGGAAACGACCAAAATGTT 260
Query 241 AAACTGATAAAAGGACAACAAGAAATGGTTAAATATGAGTTTTTCAATGTTTGTAATGAC 300
||| ||||||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct 261 AAATTGATAAAAGGACAACAAGAAATGGTTAAATATGAGTTTTTCGATGTTTGTAATGAC 320
Query 301 ATTTTGTCTCTCATTGATTCTCATCTC 327
|||||||||||||||||||||||||||
Sbjct 321 ATTTTGTCTCTCATTGATTCTCATCTC 347
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 27181639821
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5