BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT1G78260.1
Length=1530
Score E
Sequences producing significant alignments: (Bits) Value
Ahg476993 jgi|Araly1|476993|fgenesh2_kg.2__2123__AT1G78260.1 2058 0.0
Ahg313119 jgi|Araly1|313119|fgenesh1_pm.C_scaffold_1001899 549 2e-155
> Ahg476993 jgi|Araly1|476993|fgenesh2_kg.2__2123__AT1G78260.1
Length=1476
Score = 2058 bits (1114), Expect = 0.0
Identities = 1362/1476 (92%), Gaps = 39/1476 (3%)
Strand=Plus/Plus
Query 17 tctctcttccctcttctctcttctcttcATATGTGTAGGGTCGAAGACAAGAACGACACC 76
||||||||| |||||||||| | ||| | ||||||||||||||||||||| ||||| ||
Sbjct 1 TCTCTCTTCTCTCTTCTCTC-TATCTACGTATGTGTAGGGTCGAAGACAA-TACGACGCC 58
Query 77 GTTTCAAGGGTTGCAATTTGCAACCTTTTGATTGGTCTCTCTTCTCTTTGCCCAACCAAA 136
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 59 GTTTCAAGGGTTGCAATTTGCAACCTTTTGATTGGTCTCTCTTCTCTTTGCCCAACCAAA 118
Query 137 AACAACCTTTGATGATATAAAGATCAGCCAACTTTGTCCATCCCAATTCTCTCttttttt 196
||||||||||||||||||||||||||||||||||||||||| |||| ||||| |||||||
Sbjct 119 AACAACCTTTGATGATATAAAGATCAGCCAACTTTGTCCATTCCAAATCTCT-TTTTTTT 177
Query 197 tttGTTTCCCTAATGTTTTAGACAAACACAATTTTCCATAATTATTTATTTATTCAATTT 256
|||||||||||||||||| |||| |||||||||||||||||||||||||||||
Sbjct 178 C------CCCTAATGTTTTAGACAAGCACATTTTTCCATAATTATTTATTTATTCAATTT 231
Query 257 TTATCTGTTTTTGGG-TTAC-ATAT-ATCATCATCATTGGA-GACTGCCATATTTGTTAA 312
| ||||||||||||| || |||| ||||||||||| ||| |||| |||||||||||||
Sbjct 232 T-ATCTGTTTTTGGGGTTTTTATATCATCATCATCATCGGAAGACTTCCATATTTGTTAA 290
Query 313 TCGTGATATTAATTTAACTAA--TGTCTCAAACAAGCTACTACCGATCACCGTTCGGAGA 370
|||||||||| ||| || ||| |||||||||| ||||| || |||||||||| ||||||
Sbjct 291 TCGTGATATTCATTAAA-TAAAATGTCTCAAACGAGCTATTATCGATCACCGTCCGGAGA 349
Query 371 CACGACTTACACCAAAGTGTTCGTCGGAGGATTAGCGTGGGAAACTCCTACCGACGAAAT 430
|||||||||||||||||||||||| ||||||||||| |||||||||||||||||||||||
Sbjct 350 CACGACTTACACCAAAGTGTTCGTTGGAGGATTAGCATGGGAAACTCCTACCGACGAAAT 409
Query 431 GCGTCGTTACTTCGAACAGTTCGGAGAGATTCTTGAAGCCGTCATCATCACCGATAAAAA 490
||||||||||||||| |||||||||||||||||||||||||||||||| |||||||||||
Sbjct 410 GCGTCGTTACTTCGATCAGTTCGGAGAGATTCTTGAAGCCGTCATCATTACCGATAAAAA 469
Query 491 CACCGGCAAGTCTAAAGGCTACGGATTCGTGACGTTTCGGGAGTCGGACTCAGCCACGAG 550
||||||||| ||||||||||| ||||||||||||||||||||| |||| |||||||||||
Sbjct 470 CACCGGCAAATCTAAAGGCTATGGATTCGTGACGTTTCGGGAGGCGGATTCAGCCACGAG 529
Query 551 AGCCGTCGCTGATCCAAATCCGGTGATCGACGGAAGAAAAGCCAATTGTAATATTGCATC 610
||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct 530 AGCCGTCGCTGATCCAAATCCGGTGATCGACGGAAGAAAAGCCAATTGTAATATTGCGTC 589
Query 611 TTTTGGACGGCCTCGACCATCGCCGCCTCGAGGTCGAGGACAAACAGGAAGTCCGAGTCA 670
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 590 TTTTGGACGGCCTCGACCATCGCCGCCTCGAGGTCGAGGACAAACAGGAAGTCCGAGTCA 649
Query 671 GTACCAAAGTGGAGGACCATCAACCTATACCGGGATGGCTGCACCACTGCCACCGGCTGC 730
|||||||||||||||||||||| ||||||||||||||||||| |||||||||||||||
Sbjct 650 GTACCAAAGTGGAGGACCATCAGGTTATACCGGGATGGCTGCACAACTGCCACCGGCTGC 709
Query 731 AGCTCCCCAGCTCATGTATCCGTCGTACGGGTACACCTATAACCCTGATCAATTTGGGTA 790
|||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct 710 AGCTCCCCAGCTCATGTATCCGTCCTACGGGTACACCTATAACCCTGATCAATTTGGGTA 769
Query 791 CCACCAAGCATTGTACAACACACAGTTGCAACAAGCACAATACTATCAGCAGCAGCAACA 850
|||||||||| ||||||||||||||||||||||||||||||||||||||||||| || ||
Sbjct 770 CCACCAAGCACTGTACAACACACAGTTGCAACAAGCACAATACTATCAGCAGCAACAGCA 829
Query 851 GCTTTATGGAGGAGGAGCAACATCACCATCATCATCAGGAGCAACCATCATGCCTTCTCC 910
|||||||||||||||||||||||||||||||||||||||| | | ||||||||||||||
Sbjct 830 GCTTTATGGAGGAGGAGCAACATCACCATCATCATCAGGA--A-CTATCATGCCTTCTCC 886
Query 911 ATACTATTATGGCTATTCTCTTCAAGCTCCTAGAGTACCATACCAACA-C--CATCATCA 967
|||||||||||||||||||||||||||||||||||||||||||||||| | ||||||||
Sbjct 887 ATACTATTATGGCTATTCTCTTCAAGCTCCTAGAGTACCATACCAACATCATCATCATCA 946
Query 968 TCTTCCTCAACCATATAATCCTCAACAACATCATCATCAACGGTTTTCTTCTCCTTCTTT 1027
|||||||||||||||||||||||||||||||||||| | ||||||||||||||||||||
Sbjct 947 TCTTCCTCAACCATATAATCCTCAACAACATCATCA--A-CGGTTTTCTTCTCCTTCTTT 1003
Query 1028 CCTCGTTTACCCATCCAATTCCTCTTTTGCCCCTCCTCTCCAAGGAGTACTATCTTCTTC 1087
|||||||||||||||||||||||||||| ||||| ||||||||||| |||| ||||||||
Sbjct 1004 CCTCGTTTACCCATCCAATTCCTCTTTTACCCCTTCTCTCCAAGGACTACTCTCTTCTTC 1063
Query 1088 CACCGAATCTGAAGCAGTACCACAACAAGTACCAGCTGCAGAAGGCGAAGCAACAACGAC 1147
|||||| ||||||||||||||||||||| |||||||| |||||||||||||||| |||
Sbjct 1064 CACCGATTCTGAAGCAGTACCACAACAAATACCAGCTACAGAAGGCGAAGCAAC---GAC 1120
Query 1148 TGCTCCTGAAATCACAACAAGCAACACCAAAGAACCTATTTCTTCTTGATCTCTCTCTCA 1207
|||||||||||| ||||| | ||||||||||||||||||||||||||||||| ||| |||
Sbjct 1121 TGCTCCTGAAATTACAACCATCAACACCAAAGAACCTATTTCTTCTTGATCTTTCTTTCA 1180
Query 1208 TTTCCCAATTTGTACAATCTTCACATTTTTACctctctctctctGaaaaaaaGAAAACAG 1267
||||||||||||||||||||||||||||||| |||||||||||| |||||| |||
Sbjct 1181 TTTCCCAATTTGTACAATCTTCACATTTTTATCTCTCTCTCTCTCTCTGAAAGAACCCAG 1240
Query 1268 CTAATTCATTTATTTCTCAACCAGAGCAATGACTTGAGCCCCAAGAAGACAGACTCAA-- 1325
||||||||||| ||||||||| |||| |||||||||||||||||||| ||||||||||
Sbjct 1241 CTAATTCATTT-TTTCTCAACAAGAGTAATGACTTGAGCCCCAAGAATACAGACTCAAGT 1299
Query 1326 C--A---CTGTCAAACTTAAAAAGACGGCTCAAGATAAATCTCTTGTCATATTTTGCTCT 1380
| | ||||||||| ||||| ||||||| ||| ||||||||||||||||||||||||
Sbjct 1300 CTCAAGACTGTCAAACCTAAAA-GACGGCTAAAGGGAAATCTCTTGTCATATTTTGCTCT 1358
Query 1381 TTTTCTGACGGAATATATATAAAaatttgagctattcatattcttt-tttactcatttat 1439
|||||||||| |||||||||| ||||||||| | |||||||||||| |||||||||||||
Sbjct 1359 TTTTCTGACGAAATATATATATAAATTTGAGTTCTTCATATTCTTTGTTTACTCATTTAT 1418
Query 1440 tttatttctaataatttcaattttttGCTACATGAT 1475
||||| |||||||||||| | ||| ||||| |||||
Sbjct 1419 TTTATATCTAATAATTTCTACTTTATGCTATATGAT 1454
> Ahg313119 jgi|Araly1|313119|fgenesh1_pm.C_scaffold_1001899
Length=876
Score = 549 bits (297), Expect = 2e-155
Identities = 475/560 (85%), Gaps = 15/560 (3%)
Strand=Plus/Plus
Query 333 ATGTCTCAA-ACAAGCTACTACCGATCACCGTTCGGAGACACGACTTACACCAAAGTGTT 391
|||||| || |||||||| ||||||||||||||||| |||||||| |||||||||||||
Sbjct 1 ATGTCT-AATACAAGCTATTACCGATCACCGTTCGGTGACACGACCCACACCAAAGTGTT 59
Query 392 CGTCGGAGGATTAGCGTGGGAAACTCCTACCGACGAAATGCGTCGTTACTTCGAACAGTT 451
||| ||||| ||||| ||||| ||||| ||||| |||||||| ||||||||||| |||||
Sbjct 60 CGTTGGAGGTTTAGCATGGGAGACTCCGACCGATGAAATGCGCCGTTACTTCGATCAGTT 119
Query 452 CGGAGAGATTCTTGAAGCCGTCATCATCACCGATAAAAACACCGGCAAGTCTAAAGGCTA 511
||||||||||||||||||||||||||| |||||||| | |||||| || |||||||||||
Sbjct 120 CGGAGAGATTCTTGAAGCCGTCATCATTACCGATAAGACCACCGGAAAATCTAAAGGCTA 179
Query 512 CGGATTCGTGACGTTTCGGGAGTCGGACTCAGCCACGAGAGCCGTCGCTGATCCAAATCC 571
|| || || |||||||| ||||| |||||||| |||||||| ||||||||||| |||||
Sbjct 180 TGGTTTTGTCACGTTTCGAGAGTCCGACTCAGCGACGAGAGCTGTCGCTGATCCGAATCC 239
Query 572 GGTGATCGACGGAAGAAAAGCCAATTGTAATATTGCATCTTTTGGACGGCCTCGACCATC 631
||||||||| ||| |||| || ||||| |||||||| |||||||||||||| ||||||||
Sbjct 240 GGTGATCGATGGACGAAAGGCGAATTGCAATATTGCGTCTTTTGGACGGCCCCGACCATC 299
Query 632 GCCGCCTCGAGGTCGAGGACAAACAGGAAGTCCGAGTCAGTACCAAAGTGGAGGACCATC 691
| |||||||||| ||||||||| |||||| |||||||| || ||| | ||||||| |||
Sbjct 300 GACGCCTCGAGGACGAGGACAAGGAGGAAGCCCGAGTCAATATCAAGGCGGAGGACAATC 359
Query 692 AACCTATACCGGGATGGCTGCACCACTGCCACC-GGCTGC-AGCTCCCCAGCTCATGTAT 749
|| ||| ||||| ||||| || || ||| | | |||||| | || ||||||||||||||
Sbjct 360 AAGCTACACCGGAATGGCAGCTCCGGTGC-AGCAGGCTGCGA-CTGCCCAGCTCATGTAT 417
Query 750 CCGTCGTACGGGTACACCTATAACCCTGATCAATTTGGGTACCACCAAGCATTGTACAAC 809
||||| |||||||||||||| || |||| | | ||||||||||||||| | ||||||
Sbjct 418 CCGTCATACGGGTACACCTACAATTCTGA--A-TATGGGTACCACCAAGCCCTATACAAC 474
Query 810 ACACAGTTGCAACAAGCACAATACTATCAGCAGCA---GCAACAGCTTTATGGAGGAGGA 866
||||| | ||||| |||||||||||||| ||||| | | | | | |||||||||
Sbjct 475 GCACAGCTCCAACAGGCACAATACTATCAACAGCAAATGTA-CGGAGG-A-GGAGGAGGA 531
Query 867 GCAACATCACCATCATCATC 886
||||||||||||||||||||
Sbjct 532 GCAACATCACCATCATCATC 551
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 57287728480
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5