BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT1G78270.1
Length=1792
Score E
Sequences producing significant alignments: (Bits) Value
Ahg476994 jgi|Araly1|476994|fgenesh2_kg.2__2124__AT1G78270.1 1552 0.0
Ahg472480 jgi|Araly1|472480|fgenesh2_kg.1__2434__AT1G22400.1 377 1e-103
Ahg313121 jgi|Araly1|313121|fgenesh1_pm.C_scaffold_1001901 113 4e-24
> Ahg476994 jgi|Araly1|476994|fgenesh2_kg.2__2124__AT1G78270.1
Length=1535
Score = 1552 bits (840), Expect = 0.0
Identities = 971/1035 (94%), Gaps = 6/1035 (1%)
Strand=Plus/Plus
Query 171 atcatcatcgtcatcGTCAAAAGGATGGAACAACATGGCGGTTCTAGCTCACAGAAACCT 230
||||||||| | ||||||||||| |||||||||||||||||||||||||||||||||| |
Sbjct 1 ATCATCATCATTATCGTCAAAAGAATGGAACAACATGGCGGTTCTAGCTCACAGAAACGT 60
Query 231 CACGCAATGTGCATACCTTATCCAGCACAAGGCCACATCAACCCAATGCTGAAACTAGCC 290
|||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 61 CACGCAGTGTGCATACCTTATCCAGCACAAGGCCACATCAACCCAATGCTGAAACTAGCC 120
Query 291 AAGCTCCTCCACGCTAGAGGCTTCCACGTCACTTTCGTCAACACCGACTACAACCACCGC 350
|||||||||||||| |||||||||||| ||||||||||||||||||||||||||||||||
Sbjct 121 AAGCTCCTCCACGCCAGAGGCTTCCACATCACTTTCGTCAACACCGACTACAACCACCGC 180
Query 351 CGTATCCTCCAATCACGTGGCCCTCACGCTCTC-AACGGTCTCCCCTCGTTTCGCTTCGA 409
|||||||||| |||||||||| ||||||||||| || |||||||||||||||||||||||
Sbjct 181 CGTATCCTCCGATCACGTGGCTCTCACGCTCTCGAA-GGTCTCCCCTCGTTTCGCTTCGA 239
Query 410 GACTATCCCCGACGGTCTTCCTTGGACAGACGTCGACGCTAAGCAAGACATGCTCAAGCT 469
|||||||| || |||||||||||||| || ||||||||||||||||| |||||||||||
Sbjct 240 AACTATCCCTGATGGTCTTCCTTGGACCGAAGTCGACGCTAAGCAAGATATGCTCAAGCT 299
Query 470 TATTGACTCCACAATAAACAACTGTTTAGCTCCATTCAAAGACCTCATCCTCCGGTTAAA 529
||||||||| ||||| |||||||||||||||||||| ||||| |||||||||||||||||
Sbjct 300 TATTGACTCTACAATTAACAACTGTTTAGCTCCATTTAAAGAACTCATCCTCCGGTTAAA 359
Query 530 CTCCGGTTCTGATATACCACCGGTTAGCTGTATCATCTCCGACGCTTCAATGAGCTTCAC 589
||||||||||||||||||||||||| | |||||| |||| ||||||||||||||||||||
Sbjct 360 CTCCGGTTCTGATATACCACCGGTTCGTTGTATCGTCTCTGACGCTTCAATGAGCTTCAC 419
Query 590 AATTGACGCAGCGGAGGAGCTTAAAATTCCGGTAGTTCTCCTCTGGACCAACAGTGCTAC 649
||||||||| ||||||||||||||||||||||| |||||||||||||| |||||||||||
Sbjct 420 AATTGACGCGGCGGAGGAGCTTAAAATTCCGGTGGTTCTCCTCTGGACAAACAGTGCTAC 479
Query 650 TGCTTTAATCTTGTATCTCCATTACCAAAAACTCATCGAGAAAGAGATAATTCCCCTCAA 709
|||||||||||||||||||||||| ||||||||||||||||||||||||||||| |||||
Sbjct 480 TGCTTTAATCTTGTATCTCCATTATCAAAAACTCATCGAGAAAGAGATAATTCCTCTCAA 539
Query 710 AGATTCGAGTGACTTGAAGAAGCATTTAGAGACGGAGATTGATTGGATACCGTCGATGAA 769
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 540 AGATTCGAGTGACTTGAAGAAGCATTTAGAGACGGAGATTGATTGGATACCGTCGATGAA 599
Query 770 GAAGATTAAGCTTAAGGATTTTCCAGATTTCGTCACCACGACGAATCCTCAAGATCCGAT 829
||||||||||||||||||||||||||||||||||||||||||| || |||||||||||||
Sbjct 600 GAAGATTAAGCTTAAGGATTTTCCAGATTTCGTCACCACGACGGATGCTCAAGATCCGAT 659
Query 830 GATTAGTTTCATCCTTCATGTAACCGGAAGAATCAAAAGAGCTTCTGCGATCTTCATCAA 889
|||||||||||| || |||||||| |||||||||||| ||||||||||||||||||||||
Sbjct 660 GATTAGTTTCATTCTCCATGTAACTGGAAGAATCAAACGAGCTTCTGCGATCTTCATCAA 719
Query 890 CACTTTCGAAAAACTCGAGCATAACGTTCTCTTATCTCTGCGATCTCTTCTCCCTCAGAT 949
||||||||| || ||||||||||||||||||||||||||||| |||||||| ||||||||
Sbjct 720 CACTTTCGATAACCTCGAGCATAACGTTCTCTTATCTCTGCGTTCTCTTCTTCCTCAGAT 779
Query 950 CTACTCCGTTGGACCGTTCCAGATTCTGGAGAATCGCGAAATCGATAAGAACAGCGAAAT 1009
||||| |||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct 780 CTACTTCGTTGGACCGCTCCAGATTCTGGAGAATCGCGAAATCGATAAGAACAGCGAAAT 839
Query 1010 CAGAAAGCTAGG-ATTGAATCTCTGGGAAGAAGAGACGGAGTCTTTGGATTGGCTAGATA 1068
| ||| | | || || |||||| ||||||||||||||||| |||||||||||||| || |
Sbjct 840 CGGAA-GATTGGGATCGAATCTATGGGAAGAAGAGACGGAATCTTTGGATTGGCTTGACA 898
Query 1069 CTAAAG-CTGAGAAAGCTGTGATTTACGTCAACTTCGGGAGTCTAACGGTTTTGACTAGT 1127
| |||| |||||||| ||||| ||||||| ||||| |||||||||||| ||||||| ||
Sbjct 899 C-AAAGGCTGAGAAAACTGTGCTTTACGTTAACTTTGGGAGTCTAACGATTTTGACGAGA 957
Query 1128 GAGCAGATCTTAGAGTTCGCTTGGGGTTTAGCGAGGAGCGGGAAAGAGTTTCTCTGGGTG 1187
|| |||||||||||||| |||||||||||||||||||||||||| |||||||||||||||
Sbjct 958 GATCAGATCTTAGAGTTTGCTTGGGGTTTAGCGAGGAGCGGGAAGGAGTTTCTCTGGGTG 1017
Query 1188 GTGAGATCTGGTATG 1202
|||||||||||||||
Sbjct 1018 GTGAGATCTGGTATG 1032
Score = 682 bits (369), Expect = 0.0
Identities = 470/517 (91%), Gaps = 13/517 (3%)
Strand=Plus/Plus
Query 1235 GTTTTTATCGGAGACGAAGAATCGAGGAATGTTAATTAAAGGATGGTGTTCTCAGGAGAA 1294
|||||||||||||||| ||||||||||| |||| || | |||||||||||||||||||||
Sbjct 1032 GTTTTTATCGGAGACGGAGAATCGAGGATTGTTGATCAGAGGATGGTGTTCTCAGGAGAA 1091
Query 1295 GGTACTTTCGCATCCGGCGATTGGAGGATTTTTGACTCACTGTGGATGGAATTCGACGTT 1354
||||||||||||||||||||| ||||||||||||||||||||||| ||||||||||||||
Sbjct 1092 GGTACTTTCGCATCCGGCGATCGGAGGATTTTTGACTCACTGTGGTTGGAATTCGACGTT 1151
Query 1355 GGAGAGTTTGTACGCCGGTGTTCCGATGATCTGTTGGCCATTTTTTGCTGATCAGTTGAC 1414
||||||||||| ||||||||||||||||||||||||||| || || || |||||||||||
Sbjct 1152 GGAGAGTTTGTTCGCCGGTGTTCCGATGATCTGTTGGCCGTTCTTCGCCGATCAGTTGAC 1211
Query 1415 GAATCGAAAGTTCTGTTGCGAGGATTGGGGGATTGGGATGGAGATCGGCGAGGAGGTGAA 1474
||||||||||||||| ||||| |||||||||||||||| ||||||||||| ||||| ||
Sbjct 1212 GAATCGAAAGTTCTGCTGCGATAATTGGGGGATTGGGATTGAGATCGGCGAAGAGGTAAA 1271
Query 1475 GAGGGAGAGAGTGGAGACGGTGGTTAAAGAGCTCATGGACGGAGAGAAGGGAAAGAGGTT 1534
|||||||||||||||| ||||||| ||||| ||||||||||||||||| |||| ||| ||
Sbjct 1272 GAGGGAGAGAGTGGAGGCGGTGGTCAAAGATCTCATGGACGGAGAGAATGGAATGAGATT 1331
Query 1535 AAGAGAGAAGGTGGTGGAGTGGCGGCGCTTGGCGGAAGAAGCTTCGGCGCCACCGTTGGG 1594
||||||||||||||||||||||||| || |||||||||||||||||||||||||||||||
Sbjct 1332 AAGAGAGAAGGTGGTGGAGTGGCGGTGCATGGCGGAAGAAGCTTCGGCGCCACCGTTGGG 1391
Query 1595 ATCATCGTACGTGAATTTTGAAACGGTGGTTAATAAAGTCCTTACATGTCACACGATTAG 1654
|||||||||||||||||||||||||||||| || |||||||| ||| ||||| ||||||
Sbjct 1392 ATCATCGTACGTGAATTTTGAAACGGTGGTAAACAAAGTCCTAACAGGTCAC--GATTAG 1449
Query 1655 ATCGACCTAATTGGGCTTTCCGTATCCAAATAGGCCCATTAGAAAAGGCCTGTTTGTTTC 1714
||||||||||||||||||| |||||||||| |||||||||||| | |||| |
Sbjct 1450 ATCGACCTAATTGGGCTTTACGTATCCAAA--GGCCCATTAGAA--G---TGTTC----C 1498
Query 1715 CACTATCATTTGGGCTGGCTTTAATGACAATTTTAAA 1751
|| |||||||||||||||||||||| |||||||||||
Sbjct 1499 CAATATCATTTGGGCTGGCTTTAATCACAATTTTAAA 1535
> Ahg472480 jgi|Araly1|472480|fgenesh2_kg.1__2434__AT1G22400.1
Length=1639
Score = 377 bits (204), Expect = 1e-103
Identities = 1020/1405 (73%), Gaps = 92/1405 (7%)
Strand=Plus/Plus
Query 211 GTTC-TAGCTCACAGAAACCTCACGCAATGTGCATACCTTATCCAGCACAAGGCCACATC 269
|||| || |||||| ||||| || | | | || | || ||||| || ||||||||||||
Sbjct 28 GTTCATAACTCACAAAAACCACATGTAGTTTGTGTTCCATATCCGGCTCAAGGCCACATC 87
Query 270 AACCCAATGCTGAAACTAGCCAAGCTCCTCCACGCTAGAGGCTTCCACGTCACTTTCGTC 329
||||| ||| ||||| | || || ||||||||||||||||||||||||||||| ||||||
Sbjct 88 AACCCTATGATGAAAGTGGCTAAACTCCTCCACGCTAGAGGCTTCCACGTCACCTTCGTC 147
Query 330 AACACCGACTACAACCACCGCCGTATCCTCCAATCACGTGGCCCTCACGCTCTCAACGGT 389
||||||| |||||||||| ||| |||| | || ||||| || |||| ||| | ||
Sbjct 148 AACACCGTCTACAACCACAATCGTTTCCTTCGTTCTCGTGGGTCTAACGCCCTCGAGGGG 207
Query 390 CTCCCCTCGTTTCGCTTCGAGACTATCCCCGACGGTCTTCCTTG-GACAGACGTCGACGC 448
|| || ||||| || || ||| | || || |||||||| || | ||| ||| | || ||
Sbjct 208 CTTCCTTCGTTCCGGTTTGAGTCCATTCCTGACGGTCTACCG-GAGACCGACATGGATGC 266
Query 449 TAAGCAAGACATGCTCAAGC--TTAT-TGACTCCACAATAAACAACTGTTTAGCTCCATT 505
| ||| ||||| | || || || | ||| ||||| || || |||||| | ||||| ||
Sbjct 267 CACGCAGGACAT-CACA-GCCCTT-TGTGAGTCCACCATGAAGAACTGTCTCGCTCCGTT 323
Query 506 CAAAGACCTCATCCTCCGGTTAAACTCCGGTTCTGATATACCACCGGTTAGCTGTATCAT 565
|| ||| || ||| ||| | ||| |||| | || | || ||||| |||||||| |
Sbjct 324 CAGAGAGCTTGTCCAGCGGATCAACGCCGGAGATAATGTTCCTCCGGTGAGCTGTATTGT 383
Query 566 CTCCGACGCTTCAATGAGCTTCACAATTGACGCAGCGGAGGAGCTTAAAATTCCGGTAG- 624
||||||| || |||||||| || |||||| |||||||||||| | | |||| ||
Sbjct 384 ATCCGACGGTTGTATGAGCTTTACTCTTGACGTTGCGGAGGAGCTTGGAGTCCCGG-AGG 442
Query 625 TTCTCCTCTGGACCAACAGTGCTACTGCTTTAAT--CTTGTATCTCCA-TTACCAAAAAC 681
|||| | ||||| | ||||| | ||| || | ||| |||| || || | |
Sbjct 443 TTCTTTTTTGGACGACCAGTGGTTGTGCGTTCTTGGCTT--ATCTACACTTTT-ATCT-C 498
Query 682 TC-ATCGAGAAAGAGATAAT-TCCCCTCAAAGATTCGAGTGACTTGAAGAAGCA-T--TT 736
| |||||||| | | | || ||| || |||||| |||| |||||| |||| | | ||
Sbjct 499 TTTATCGAGAAGG-GTTTATCTCCGCTAAAAGATGAGAGTTACTTGACGAAGGAGTACTT 557
Query 737 AGA-GAC--GGAGATTGATTGGATACCGTCGATGAAGAAGATTAAGCTTAAGGATTTTCC 793
||| ||| || || |||| ||||| | |||||||| | || || || ||| ||||
Sbjct 558 AGACGACACGGTTATAGATTTTATACCAACCATGAAGAATCTCAAACTAAAAGATATTCC 617
Query 794 -AGATTTCGTCACC-ACGACGAATCCTCAAGATCCGATGATTAGTTTCATCCTTCATGTA 851
|| || | | || || || |||||| | ||| ||||||| |||| ||| | | |
Sbjct 618 TAGCTT-CAT-ACGTACCACTAATCCTGATGATGTTATGATTAATTTCGCCCTCCGCG-A 674
Query 852 -ACCG-GAAGAATCAAAAGAGCTTCTGCGATC-TTCATCAACAC-TTTCGAAAAACTCGA 907
|||| | || |||| | |||||||| ||| ||| | ||||| ||| || | || ||
Sbjct 675 GACCGAGC-GAGCCAAACGTGCTTCTGCTATCATTC-TAAACACATTT-GATGACCTTGA 731
Query 908 GCATAACGTTCTCTTAT-CTCTGC-GATCTC-TTCTCCCTCAGATCTACTCCGTTGGACC 964
|||| | ||| | | | || ||| | || | || | |||| | | || || ||||||||
Sbjct 732 GCATGATGTTGT-TCAGGCTATGCAG-TC-CATTTTACCTCCGGTTTATTCAGTTGGACC 788
Query 965 G-TTCCAGATTCTGGAG-AATC-GCGAAATCGAT-AAGAACAGCGAAATCAGAAAGCT-A 1019
| ||| | | || || || | | || || || ||| || || || ||| | | |
Sbjct 789 GCTTC-ATCT-CTT-AGCAAACCGGGAGATTGAAGAAGGT-AGTGAGATTGGAATGATGA 844
Query 1020 GGATT-GAATCTCTGGGAAGAAGAGACGGAGTCTTTGGATTGGCTAGATACTAA-AGCTG 1077
| || |||| | ||| |||| |||| ||| | |||||||||||| |||||||| | ||
Sbjct 845 G--TTCGAATTTATGGAAAGAGGAGATGGAATGTTTGGATTGGCTTGATACTAAGA-CTA 901
Query 1078 AGAA-AGCTGTGATTTACGTCAACTTCGGGAGTC-TAACGGTTTTGACTAGTGA-GCAGA 1134
| || || ||| |||||| | ||||| ||||| | |||||||||||| | |||| ||||
Sbjct 902 AAAACAG-TGTAATTTACATTAACTTTGGGAG-CATAACGGTTTTGAGT-GTGAAGCAGC 958
Query 1135 TCT-TAGAGTTCGCTTGGGGTTTAGCGAGGA-GCGGGAAAGAGTTTCTCTGGGTGGTGAG 1192
| | | ||||| ||||||||||| ||| ||| | |||||||||||| | |||||| | |
Sbjct 959 T-TGTGGAGTTTGCTTGGGGTTTGGCG-GGAAGTGGGAAAGAGTTTTTATGGGTGATTCG 1016
Query 1193 ATCTGG-TATGGTCGAC-GGAGATGATTCGATTCTTCCGGCGGAGTTTTTATCGGAGACG 1250
| || | | || | | ||||| || | || |||| ||||||||||| |||||||
Sbjct 1017 GCC-GGATTTAGTAG-CTGGAGAGGAGGCAATGGTTCCACCGGAGTTTTTAACGGAGACC 1074
Query 1251 AA-GAATCG-AGGAATGTTAATTAAAGGATGGTGTTCTCAGGAGAAGGTACTTTCGCATC 1308
|| || || || | || || | | |||||| |||||||||| || ||||| ||||
Sbjct 1075 AAAGAC-CGGAGTA-TGCTAGCGA--GT-TGGTGTCCTCAGGAGAAAGTTCTTTCTCATC 1129
Query 1309 CGGCGATTGGAGGATTTTTGACTCACTGTGGATGGAATTCGACGTTGGAGAGT-TTGT-A 1366
||||||||||||| || ||||| || || || ||||| |||| || || ||| || | |
Sbjct 1130 CGGCGATTGGAGGGTTCTTGACGCATTGCGGGTGGAACTCGATATTAGAAAGTCTT-TCA 1188
Query 1367 CGCCGGTGTTCCGATGATCTGTTGGCCATTTTTTGCTGATCAGTTGACGAATCGAAAGT- 1425
| || ||||| ||| | |||||||||||||||||||| || | |||| | ||||
Sbjct 1189 AGT-GGAGTTCCAATGGTGTGTTGGCCATTTTTTGCTGACCAACAAATGAATTGTAAGTA 1247
Query 1426 TCTGTTGCGAGGATTGGGG-GATTGGGATGGAGATCGGCG-AGGAGGTGAAGAGGGAGAG 1483
| ||||| || || |||| | ||||||| ||||| || | || | |||||||| || ||
Sbjct 1248 T-TGTTGTGACGAGTGGGATG-TTGGGATTGAGATAGGTGGAG-ATGTGAAGAGAGA-AG 1303
Query 1484 A-GTGGAGACGGTGGTTAAAGAGCTCATGGACGGAGAGAAGGGAAAGAGGTTAAGAGAGA 1542
| || ||||||||||||| |||||||||||| ||||| || ||||| | | ||| |||
Sbjct 1304 AAGTTGAGACGGTGGTTAGAGAGCTCATGGATGGAGATAAAGGAAAAAAAATGAGACAGA 1363
Query 1543 AGGTGGTGGAGTGGCGGCGCTTGGC 1567
||| | | ||||||| |||||||||
Sbjct 1364 AGGCGCTAGAGTGGCAGCGCTTGGC 1388
> Ahg313121 jgi|Araly1|313121|fgenesh1_pm.C_scaffold_1001901
Length=1281
Score = 113 bits (61), Expect = 4e-24
Identities = 101/121 (83%), Gaps = 0/121 (0%)
Strand=Plus/Plus
Query 215 TAGCTCACAGAAACCTCACGCAATGTGCATACCTTATCCAGCACAAGGCCACATCAACCC 274
|||| |||| ||||| |||| | | ||| | ||| | || || |||||||||||||||||
Sbjct 21 TAGCACACAAAAACCACACGTAGTTTGCGTTCCTCACCCGGCTCAAGGCCACATCAACCC 80
Query 275 AATGCTGAAACTAGCCAAGCTCCTCCACGCTAGAGGCTTCCACGTCACTTTCGTCAACAC 334
||||| ||| | || || ||||||||||||||||||||||||||||| ||||||||||
Sbjct 81 GATGCTAAAAGTGGCTAAACTCCTCCACGCTAGAGGCTTCCACGTCACCATCGTCAACAC 140
Query 335 C 335
|
Sbjct 141 C 141
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 67267372670
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5