BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: halleri_transcript_ahg.fa 32,672 sequences; 38,939,717 total letters Query= AT1G78270.1 Length=1792 Score E Sequences producing significant alignments: (Bits) Value Ahg476994 jgi|Araly1|476994|fgenesh2_kg.2__2124__AT1G78270.1 1552 0.0 Ahg472480 jgi|Araly1|472480|fgenesh2_kg.1__2434__AT1G22400.1 377 1e-103 Ahg313121 jgi|Araly1|313121|fgenesh1_pm.C_scaffold_1001901 113 4e-24 > Ahg476994 jgi|Araly1|476994|fgenesh2_kg.2__2124__AT1G78270.1 Length=1535 Score = 1552 bits (840), Expect = 0.0 Identities = 971/1035 (94%), Gaps = 6/1035 (1%) Strand=Plus/Plus Query 171 atcatcatcgtcatcGTCAAAAGGATGGAACAACATGGCGGTTCTAGCTCACAGAAACCT 230 ||||||||| | ||||||||||| |||||||||||||||||||||||||||||||||| | Sbjct 1 ATCATCATCATTATCGTCAAAAGAATGGAACAACATGGCGGTTCTAGCTCACAGAAACGT 60 Query 231 CACGCAATGTGCATACCTTATCCAGCACAAGGCCACATCAACCCAATGCTGAAACTAGCC 290 |||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 61 CACGCAGTGTGCATACCTTATCCAGCACAAGGCCACATCAACCCAATGCTGAAACTAGCC 120 Query 291 AAGCTCCTCCACGCTAGAGGCTTCCACGTCACTTTCGTCAACACCGACTACAACCACCGC 350 |||||||||||||| |||||||||||| |||||||||||||||||||||||||||||||| Sbjct 121 AAGCTCCTCCACGCCAGAGGCTTCCACATCACTTTCGTCAACACCGACTACAACCACCGC 180 Query 351 CGTATCCTCCAATCACGTGGCCCTCACGCTCTC-AACGGTCTCCCCTCGTTTCGCTTCGA 409 |||||||||| |||||||||| ||||||||||| || ||||||||||||||||||||||| Sbjct 181 CGTATCCTCCGATCACGTGGCTCTCACGCTCTCGAA-GGTCTCCCCTCGTTTCGCTTCGA 239 Query 410 GACTATCCCCGACGGTCTTCCTTGGACAGACGTCGACGCTAAGCAAGACATGCTCAAGCT 469 |||||||| || |||||||||||||| || ||||||||||||||||| ||||||||||| Sbjct 240 AACTATCCCTGATGGTCTTCCTTGGACCGAAGTCGACGCTAAGCAAGATATGCTCAAGCT 299 Query 470 TATTGACTCCACAATAAACAACTGTTTAGCTCCATTCAAAGACCTCATCCTCCGGTTAAA 529 ||||||||| ||||| |||||||||||||||||||| ||||| ||||||||||||||||| Sbjct 300 TATTGACTCTACAATTAACAACTGTTTAGCTCCATTTAAAGAACTCATCCTCCGGTTAAA 359 Query 530 CTCCGGTTCTGATATACCACCGGTTAGCTGTATCATCTCCGACGCTTCAATGAGCTTCAC 589 ||||||||||||||||||||||||| | |||||| |||| |||||||||||||||||||| Sbjct 360 CTCCGGTTCTGATATACCACCGGTTCGTTGTATCGTCTCTGACGCTTCAATGAGCTTCAC 419 Query 590 AATTGACGCAGCGGAGGAGCTTAAAATTCCGGTAGTTCTCCTCTGGACCAACAGTGCTAC 649 ||||||||| ||||||||||||||||||||||| |||||||||||||| ||||||||||| Sbjct 420 AATTGACGCGGCGGAGGAGCTTAAAATTCCGGTGGTTCTCCTCTGGACAAACAGTGCTAC 479 Query 650 TGCTTTAATCTTGTATCTCCATTACCAAAAACTCATCGAGAAAGAGATAATTCCCCTCAA 709 |||||||||||||||||||||||| ||||||||||||||||||||||||||||| ||||| Sbjct 480 TGCTTTAATCTTGTATCTCCATTATCAAAAACTCATCGAGAAAGAGATAATTCCTCTCAA 539 Query 710 AGATTCGAGTGACTTGAAGAAGCATTTAGAGACGGAGATTGATTGGATACCGTCGATGAA 769 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 540 AGATTCGAGTGACTTGAAGAAGCATTTAGAGACGGAGATTGATTGGATACCGTCGATGAA 599 Query 770 GAAGATTAAGCTTAAGGATTTTCCAGATTTCGTCACCACGACGAATCCTCAAGATCCGAT 829 ||||||||||||||||||||||||||||||||||||||||||| || ||||||||||||| Sbjct 600 GAAGATTAAGCTTAAGGATTTTCCAGATTTCGTCACCACGACGGATGCTCAAGATCCGAT 659 Query 830 GATTAGTTTCATCCTTCATGTAACCGGAAGAATCAAAAGAGCTTCTGCGATCTTCATCAA 889 |||||||||||| || |||||||| |||||||||||| |||||||||||||||||||||| Sbjct 660 GATTAGTTTCATTCTCCATGTAACTGGAAGAATCAAACGAGCTTCTGCGATCTTCATCAA 719 Query 890 CACTTTCGAAAAACTCGAGCATAACGTTCTCTTATCTCTGCGATCTCTTCTCCCTCAGAT 949 ||||||||| || ||||||||||||||||||||||||||||| |||||||| |||||||| Sbjct 720 CACTTTCGATAACCTCGAGCATAACGTTCTCTTATCTCTGCGTTCTCTTCTTCCTCAGAT 779 Query 950 CTACTCCGTTGGACCGTTCCAGATTCTGGAGAATCGCGAAATCGATAAGAACAGCGAAAT 1009 ||||| |||||||||| ||||||||||||||||||||||||||||||||||||||||||| Sbjct 780 CTACTTCGTTGGACCGCTCCAGATTCTGGAGAATCGCGAAATCGATAAGAACAGCGAAAT 839 Query 1010 CAGAAAGCTAGG-ATTGAATCTCTGGGAAGAAGAGACGGAGTCTTTGGATTGGCTAGATA 1068 | ||| | | || || |||||| ||||||||||||||||| |||||||||||||| || | Sbjct 840 CGGAA-GATTGGGATCGAATCTATGGGAAGAAGAGACGGAATCTTTGGATTGGCTTGACA 898 Query 1069 CTAAAG-CTGAGAAAGCTGTGATTTACGTCAACTTCGGGAGTCTAACGGTTTTGACTAGT 1127 | |||| |||||||| ||||| ||||||| ||||| |||||||||||| ||||||| || Sbjct 899 C-AAAGGCTGAGAAAACTGTGCTTTACGTTAACTTTGGGAGTCTAACGATTTTGACGAGA 957 Query 1128 GAGCAGATCTTAGAGTTCGCTTGGGGTTTAGCGAGGAGCGGGAAAGAGTTTCTCTGGGTG 1187 || |||||||||||||| |||||||||||||||||||||||||| ||||||||||||||| Sbjct 958 GATCAGATCTTAGAGTTTGCTTGGGGTTTAGCGAGGAGCGGGAAGGAGTTTCTCTGGGTG 1017 Query 1188 GTGAGATCTGGTATG 1202 ||||||||||||||| Sbjct 1018 GTGAGATCTGGTATG 1032 Score = 682 bits (369), Expect = 0.0 Identities = 470/517 (91%), Gaps = 13/517 (3%) Strand=Plus/Plus Query 1235 GTTTTTATCGGAGACGAAGAATCGAGGAATGTTAATTAAAGGATGGTGTTCTCAGGAGAA 1294 |||||||||||||||| ||||||||||| |||| || | ||||||||||||||||||||| Sbjct 1032 GTTTTTATCGGAGACGGAGAATCGAGGATTGTTGATCAGAGGATGGTGTTCTCAGGAGAA 1091 Query 1295 GGTACTTTCGCATCCGGCGATTGGAGGATTTTTGACTCACTGTGGATGGAATTCGACGTT 1354 ||||||||||||||||||||| ||||||||||||||||||||||| |||||||||||||| Sbjct 1092 GGTACTTTCGCATCCGGCGATCGGAGGATTTTTGACTCACTGTGGTTGGAATTCGACGTT 1151 Query 1355 GGAGAGTTTGTACGCCGGTGTTCCGATGATCTGTTGGCCATTTTTTGCTGATCAGTTGAC 1414 ||||||||||| ||||||||||||||||||||||||||| || || || ||||||||||| Sbjct 1152 GGAGAGTTTGTTCGCCGGTGTTCCGATGATCTGTTGGCCGTTCTTCGCCGATCAGTTGAC 1211 Query 1415 GAATCGAAAGTTCTGTTGCGAGGATTGGGGGATTGGGATGGAGATCGGCGAGGAGGTGAA 1474 ||||||||||||||| ||||| |||||||||||||||| ||||||||||| ||||| || Sbjct 1212 GAATCGAAAGTTCTGCTGCGATAATTGGGGGATTGGGATTGAGATCGGCGAAGAGGTAAA 1271 Query 1475 GAGGGAGAGAGTGGAGACGGTGGTTAAAGAGCTCATGGACGGAGAGAAGGGAAAGAGGTT 1534 |||||||||||||||| ||||||| ||||| ||||||||||||||||| |||| ||| || Sbjct 1272 GAGGGAGAGAGTGGAGGCGGTGGTCAAAGATCTCATGGACGGAGAGAATGGAATGAGATT 1331 Query 1535 AAGAGAGAAGGTGGTGGAGTGGCGGCGCTTGGCGGAAGAAGCTTCGGCGCCACCGTTGGG 1594 ||||||||||||||||||||||||| || ||||||||||||||||||||||||||||||| Sbjct 1332 AAGAGAGAAGGTGGTGGAGTGGCGGTGCATGGCGGAAGAAGCTTCGGCGCCACCGTTGGG 1391 Query 1595 ATCATCGTACGTGAATTTTGAAACGGTGGTTAATAAAGTCCTTACATGTCACACGATTAG 1654 |||||||||||||||||||||||||||||| || |||||||| ||| ||||| |||||| Sbjct 1392 ATCATCGTACGTGAATTTTGAAACGGTGGTAAACAAAGTCCTAACAGGTCAC--GATTAG 1449 Query 1655 ATCGACCTAATTGGGCTTTCCGTATCCAAATAGGCCCATTAGAAAAGGCCTGTTTGTTTC 1714 ||||||||||||||||||| |||||||||| |||||||||||| | |||| | Sbjct 1450 ATCGACCTAATTGGGCTTTACGTATCCAAA--GGCCCATTAGAA--G---TGTTC----C 1498 Query 1715 CACTATCATTTGGGCTGGCTTTAATGACAATTTTAAA 1751 || |||||||||||||||||||||| ||||||||||| Sbjct 1499 CAATATCATTTGGGCTGGCTTTAATCACAATTTTAAA 1535 > Ahg472480 jgi|Araly1|472480|fgenesh2_kg.1__2434__AT1G22400.1 Length=1639 Score = 377 bits (204), Expect = 1e-103 Identities = 1020/1405 (73%), Gaps = 92/1405 (7%) Strand=Plus/Plus Query 211 GTTC-TAGCTCACAGAAACCTCACGCAATGTGCATACCTTATCCAGCACAAGGCCACATC 269 |||| || |||||| ||||| || | | | || | || ||||| || |||||||||||| Sbjct 28 GTTCATAACTCACAAAAACCACATGTAGTTTGTGTTCCATATCCGGCTCAAGGCCACATC 87 Query 270 AACCCAATGCTGAAACTAGCCAAGCTCCTCCACGCTAGAGGCTTCCACGTCACTTTCGTC 329 ||||| ||| ||||| | || || ||||||||||||||||||||||||||||| |||||| Sbjct 88 AACCCTATGATGAAAGTGGCTAAACTCCTCCACGCTAGAGGCTTCCACGTCACCTTCGTC 147 Query 330 AACACCGACTACAACCACCGCCGTATCCTCCAATCACGTGGCCCTCACGCTCTCAACGGT 389 ||||||| |||||||||| ||| |||| | || ||||| || |||| ||| | || Sbjct 148 AACACCGTCTACAACCACAATCGTTTCCTTCGTTCTCGTGGGTCTAACGCCCTCGAGGGG 207 Query 390 CTCCCCTCGTTTCGCTTCGAGACTATCCCCGACGGTCTTCCTTG-GACAGACGTCGACGC 448 || || ||||| || || ||| | || || |||||||| || | ||| ||| | || || Sbjct 208 CTTCCTTCGTTCCGGTTTGAGTCCATTCCTGACGGTCTACCG-GAGACCGACATGGATGC 266 Query 449 TAAGCAAGACATGCTCAAGC--TTAT-TGACTCCACAATAAACAACTGTTTAGCTCCATT 505 | ||| ||||| | || || || | ||| ||||| || || |||||| | ||||| || Sbjct 267 CACGCAGGACAT-CACA-GCCCTT-TGTGAGTCCACCATGAAGAACTGTCTCGCTCCGTT 323 Query 506 CAAAGACCTCATCCTCCGGTTAAACTCCGGTTCTGATATACCACCGGTTAGCTGTATCAT 565 || ||| || ||| ||| | ||| |||| | || | || ||||| |||||||| | Sbjct 324 CAGAGAGCTTGTCCAGCGGATCAACGCCGGAGATAATGTTCCTCCGGTGAGCTGTATTGT 383 Query 566 CTCCGACGCTTCAATGAGCTTCACAATTGACGCAGCGGAGGAGCTTAAAATTCCGGTAG- 624 ||||||| || |||||||| || |||||| |||||||||||| | | |||| || Sbjct 384 ATCCGACGGTTGTATGAGCTTTACTCTTGACGTTGCGGAGGAGCTTGGAGTCCCGG-AGG 442 Query 625 TTCTCCTCTGGACCAACAGTGCTACTGCTTTAAT--CTTGTATCTCCA-TTACCAAAAAC 681 |||| | ||||| | ||||| | ||| || | ||| |||| || || | | Sbjct 443 TTCTTTTTTGGACGACCAGTGGTTGTGCGTTCTTGGCTT--ATCTACACTTTT-ATCT-C 498 Query 682 TC-ATCGAGAAAGAGATAAT-TCCCCTCAAAGATTCGAGTGACTTGAAGAAGCA-T--TT 736 | |||||||| | | | || ||| || |||||| |||| |||||| |||| | | || Sbjct 499 TTTATCGAGAAGG-GTTTATCTCCGCTAAAAGATGAGAGTTACTTGACGAAGGAGTACTT 557 Query 737 AGA-GAC--GGAGATTGATTGGATACCGTCGATGAAGAAGATTAAGCTTAAGGATTTTCC 793 ||| ||| || || |||| ||||| | |||||||| | || || || ||| |||| Sbjct 558 AGACGACACGGTTATAGATTTTATACCAACCATGAAGAATCTCAAACTAAAAGATATTCC 617 Query 794 -AGATTTCGTCACC-ACGACGAATCCTCAAGATCCGATGATTAGTTTCATCCTTCATGTA 851 || || | | || || || |||||| | ||| ||||||| |||| ||| | | | Sbjct 618 TAGCTT-CAT-ACGTACCACTAATCCTGATGATGTTATGATTAATTTCGCCCTCCGCG-A 674 Query 852 -ACCG-GAAGAATCAAAAGAGCTTCTGCGATC-TTCATCAACAC-TTTCGAAAAACTCGA 907 |||| | || |||| | |||||||| ||| ||| | ||||| ||| || | || || Sbjct 675 GACCGAGC-GAGCCAAACGTGCTTCTGCTATCATTC-TAAACACATTT-GATGACCTTGA 731 Query 908 GCATAACGTTCTCTTAT-CTCTGC-GATCTC-TTCTCCCTCAGATCTACTCCGTTGGACC 964 |||| | ||| | | | || ||| | || | || | |||| | | || || |||||||| Sbjct 732 GCATGATGTTGT-TCAGGCTATGCAG-TC-CATTTTACCTCCGGTTTATTCAGTTGGACC 788 Query 965 G-TTCCAGATTCTGGAG-AATC-GCGAAATCGAT-AAGAACAGCGAAATCAGAAAGCT-A 1019 | ||| | | || || || | | || || || ||| || || || ||| | | | Sbjct 789 GCTTC-ATCT-CTT-AGCAAACCGGGAGATTGAAGAAGGT-AGTGAGATTGGAATGATGA 844 Query 1020 GGATT-GAATCTCTGGGAAGAAGAGACGGAGTCTTTGGATTGGCTAGATACTAA-AGCTG 1077 | || |||| | ||| |||| |||| ||| | |||||||||||| |||||||| | || Sbjct 845 G--TTCGAATTTATGGAAAGAGGAGATGGAATGTTTGGATTGGCTTGATACTAAGA-CTA 901 Query 1078 AGAA-AGCTGTGATTTACGTCAACTTCGGGAGTC-TAACGGTTTTGACTAGTGA-GCAGA 1134 | || || ||| |||||| | ||||| ||||| | |||||||||||| | |||| |||| Sbjct 902 AAAACAG-TGTAATTTACATTAACTTTGGGAG-CATAACGGTTTTGAGT-GTGAAGCAGC 958 Query 1135 TCT-TAGAGTTCGCTTGGGGTTTAGCGAGGA-GCGGGAAAGAGTTTCTCTGGGTGGTGAG 1192 | | | ||||| ||||||||||| ||| ||| | |||||||||||| | |||||| | | Sbjct 959 T-TGTGGAGTTTGCTTGGGGTTTGGCG-GGAAGTGGGAAAGAGTTTTTATGGGTGATTCG 1016 Query 1193 ATCTGG-TATGGTCGAC-GGAGATGATTCGATTCTTCCGGCGGAGTTTTTATCGGAGACG 1250 | || | | || | | ||||| || | || |||| ||||||||||| ||||||| Sbjct 1017 GCC-GGATTTAGTAG-CTGGAGAGGAGGCAATGGTTCCACCGGAGTTTTTAACGGAGACC 1074 Query 1251 AA-GAATCG-AGGAATGTTAATTAAAGGATGGTGTTCTCAGGAGAAGGTACTTTCGCATC 1308 || || || || | || || | | |||||| |||||||||| || ||||| |||| Sbjct 1075 AAAGAC-CGGAGTA-TGCTAGCGA--GT-TGGTGTCCTCAGGAGAAAGTTCTTTCTCATC 1129 Query 1309 CGGCGATTGGAGGATTTTTGACTCACTGTGGATGGAATTCGACGTTGGAGAGT-TTGT-A 1366 ||||||||||||| || ||||| || || || ||||| |||| || || ||| || | | Sbjct 1130 CGGCGATTGGAGGGTTCTTGACGCATTGCGGGTGGAACTCGATATTAGAAAGTCTT-TCA 1188 Query 1367 CGCCGGTGTTCCGATGATCTGTTGGCCATTTTTTGCTGATCAGTTGACGAATCGAAAGT- 1425 | || ||||| ||| | |||||||||||||||||||| || | |||| | |||| Sbjct 1189 AGT-GGAGTTCCAATGGTGTGTTGGCCATTTTTTGCTGACCAACAAATGAATTGTAAGTA 1247 Query 1426 TCTGTTGCGAGGATTGGGG-GATTGGGATGGAGATCGGCG-AGGAGGTGAAGAGGGAGAG 1483 | ||||| || || |||| | ||||||| ||||| || | || | |||||||| || || Sbjct 1248 T-TGTTGTGACGAGTGGGATG-TTGGGATTGAGATAGGTGGAG-ATGTGAAGAGAGA-AG 1303 Query 1484 A-GTGGAGACGGTGGTTAAAGAGCTCATGGACGGAGAGAAGGGAAAGAGGTTAAGAGAGA 1542 | || ||||||||||||| |||||||||||| ||||| || ||||| | | ||| ||| Sbjct 1304 AAGTTGAGACGGTGGTTAGAGAGCTCATGGATGGAGATAAAGGAAAAAAAATGAGACAGA 1363 Query 1543 AGGTGGTGGAGTGGCGGCGCTTGGC 1567 ||| | | ||||||| ||||||||| Sbjct 1364 AGGCGCTAGAGTGGCAGCGCTTGGC 1388 > Ahg313121 jgi|Araly1|313121|fgenesh1_pm.C_scaffold_1001901 Length=1281 Score = 113 bits (61), Expect = 4e-24 Identities = 101/121 (83%), Gaps = 0/121 (0%) Strand=Plus/Plus Query 215 TAGCTCACAGAAACCTCACGCAATGTGCATACCTTATCCAGCACAAGGCCACATCAACCC 274 |||| |||| ||||| |||| | | ||| | ||| | || || ||||||||||||||||| Sbjct 21 TAGCACACAAAAACCACACGTAGTTTGCGTTCCTCACCCGGCTCAAGGCCACATCAACCC 80 Query 275 AATGCTGAAACTAGCCAAGCTCCTCCACGCTAGAGGCTTCCACGTCACTTTCGTCAACAC 334 ||||| ||| | || || ||||||||||||||||||||||||||||| |||||||||| Sbjct 81 GATGCTAAAAGTGGCTAAACTCCTCCACGCTAGAGGCTTCCACGTCACCATCGTCAACAC 140 Query 335 C 335 | Sbjct 141 C 141 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 67267372670 Database: halleri_transcript_ahg.fa Posted date: Sep 25, 2014 2:02 AM Number of letters in database: 38,939,717 Number of sequences in database: 32,672 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5