BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT1G78280.1
Length=3355
Score E
Sequences producing significant alignments: (Bits) Value
Ahg927234 jgi|Araly1|927234|scaffold_202795.1 2615 0.0
Ahg359220 jgi|Araly1|359220|fgenesh1_pg.C_scaffold_60000001 1535 0.0
> Ahg927234 jgi|Araly1|927234|scaffold_202795.1
Length=2750
Score = 2615 bits (1416), Expect = 0.0
Identities = 1584/1666 (95%), Gaps = 8/1666 (0%)
Strand=Plus/Plus
Query 248 TTCCATTGAAGCTTATAGCCAATGACGACGTTAGGACAAAGAGATCGCCGACCAGATGCT 307
|||||| ||||||| ||||||||||||||||||||||||||||||||||||||||| |||
Sbjct 2 TTCCATAGAAGCTTGTAGCCAATGACGACGTTAGGACAAAGAGATCGCCGACCAGAGGCT 61
Query 308 CTCGGTAGTCTCAGTGTTCTACCAGATGAGACCATCTGTGTTCTTCTCGAATACCTTGCT 367
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 62 CTCGGTAGTCTCAGTGTTCTACCAGATGAGACCATCTGTGTTCTTCTCGAATACCTTGCT 121
Query 368 CCCCGAGATATTGCTCACCTCGCTTGTGTCAGCAGTGTGATGTATATTCTATGTAATGAA 427
|| |||||||||||| |||||||||||||||||||||| |||||||||||||||||||||
Sbjct 122 CCTCGAGATATTGCTAACCTCGCTTGTGTCAGCAGTGTCATGTATATTCTATGTAATGAA 181
Query 428 GAACCATTGTGGATGAGTTTGTGTCTCAGAAGAGCAAAAGGTCCTCTTGAATACAAAGGT 487
|||||||| |||||||| || |||||||||||||||||||||||||||||||||||||||
Sbjct 182 GAACCATTATGGATGAGCTTATGTCTCAGAAGAGCAAAAGGTCCTCTTGAATACAAAGGT 241
Query 488 TCTTGGaaaaaaaCAACATTGCATCTAGAAGGAGTTACTCAAGAAAATGACGCATACAGA 547
|||||||||||||| ||||||||||||||||||||| |||||||||||| |||||| |||
Sbjct 242 TCTTGGAAAAAAACCACATTGCATCTAGAAGGAGTTGCTCAAGAAAATGTCGCATATAGA 301
Query 548 AAATGTTTTCATTTTGATGGATTCATGTCGTTGTACTTGTATAAACGATTCTATAGGTGT 607
||| ||||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct 302 AAACCTTTTCATTTTGATGGATTCATGTCGCTGTACTTGTATAAACGATTCTATAGGTGT 361
Query 608 AATACATCTCTTGACGGGTTCTCTTTTGATAATGGGAATGTGGAACGTAGGAGAAATATC 667
|||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct 362 AATACATCTCTTGACGGGTTCTCTTTTGATAATGGGAATGTGGAACGTAGGAGAGATATC 421
Query 668 TCCTTGGATGAGTTTTCTAAGGAATACGACGCCAAGAAACCTGTTTTGCTTTCTGGCCTT 727
||||||||||||||||| |||||||| ||||||||||||||||||||||||||||| |||
Sbjct 422 TCCTTGGATGAGTTTTCCAAGGAATATGACGCCAAGAAACCTGTTTTGCTTTCTGGACTT 481
Query 728 GCTGATTCTTGGCCAGCCAGTA-ATACGTGGACTATCGACCAACTCTCAGAGAAATATGG 786
||||||||||||||||| |||| | |||||||| ||||||||||||||||||||||||||
Sbjct 482 GCTGATTCTTGGCCAGCAAGTACA-ACGTGGACAATCGACCAACTCTCAGAGAAATATGG 540
Query 787 TGAAGTCCCGTTTAGAATATCTCAGAGGAGCCCCAACAAAATTTCCATGAAGTTCAAGGA 846
||||||||| |||||||||||||||||||| |||||||||||||| ||||| ||||||||
Sbjct 541 TGAAGTCCCTTTTAGAATATCTCAGAGGAGTCCCAACAAAATTTCTATGAACTTCAAGGA 600
Query 847 TTACATCGCATATATGAAAACTCAGCGGGATGAAGATCCTCTATACGTTTTCGATGACAA 906
||||||| | ||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct 601 TTACATCTCGTATATGAAAACCCAGCGGGATGAAGATCCTCTATACGTTTTCGATGACAA 660
Query 907 GTTTGGAGAAGCTGCTCCAGAATTATTGAAAGACTATAGTGTGCCCCATTTGTTTCAAGA 966
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 661 GTTTGGAGAAGCTGCTCCAGAATTATTGAAAGACTATAGTGTGCCCCATTTGTTTCAAGA 720
Query 967 AGATTGGTTTGAGATCTTAGACAAGGAAAGTCGTCCTCCATACAGATGGCTTATAGTTGG 1026
||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| ||
Sbjct 721 AGATTGGTTTGAGATCTTAGACAAGGAAAGTCGTCCTCCGTACAGATGGCTTATAGTCGG 780
Query 1027 TCCGGAGAGGTCTGGTGCATCTTGGCATGTTGACCCAGCTCTTACCAGCGCCTGGAACAC 1086
|||||||||||||||||||||||||||||| || ||||||||||||||||||||||||||
Sbjct 781 TCCGGAGAGGTCTGGTGCATCTTGGCATGTCGATCCAGCTCTTACCAGCGCCTGGAACAC 840
Query 1087 CCTGCTTTGCGGTCGGAAAAGGTGGGCATTGTATCCCCCTGGAAAAGTGCCTCTAGGTGT 1146
|||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct 841 CCTGCTTTGCGGTCGGAAAAGGTGGGCATTGTATCCCCCTGGAAAAGTGCCTTTAGGTGT 900
Query 1147 TACAGTCCATGTCAATGAAGATGATGGTGATGTCAGCATTGATACACCCTCATCTCTGCA 1206
|||||| ||||| ||||||||||| |||||||||||||| || || ||||||||||||||
Sbjct 901 TACAGTTCATGTAAATGAAGATGACGGTGATGTCAGCATCGACACCCCCTCATCTCTGCA 960
Query 1207 GTGGTGGCTAGACTATTATCCCCTTCTTGCGGACGAAGACAAACCGATTGAGTGCACACT 1266
|||||||||||||||||||||||| |||||||||||||||||||| ||||||||||||||
Sbjct 961 GTGGTGGCTAGACTATTATCCCCTCCTTGCGGACGAAGACAAACCAATTGAGTGCACACT 1020
Query 1267 ACTACCTGGCGAAACGATTTATGTTCCAAGTGGTTGGTGGCACTGTATCCTTAATCTTGA 1326
|||| |||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1021 ACTAGCTGGTGAAACGATTTATGTTCCAAGTGGTTGGTGGCACTGTATCCTTAATCTTGA 1080
Query 1327 ACCAACAGTGGCTGTTACCCAGAATTTTGTGAACAAAGAAAACTTTGGGTTCGTGTGCTT 1386
||||||||| |||||||||||||||||||||||||||||||| |||||||||||||| ||
Sbjct 1081 ACCAACAGTAGCTGTTACCCAGAATTTTGTGAACAAAGAAAATTTTGGGTTCGTGTGTTT 1140
Query 1387 GGATATGGCGCCTGGTTACCATCACAAAGGAGTTTGCCGTGCTGGGCTTCTTGCTCTTGA 1446
|||||||||||||||||||||||||||||| |||||||||||||||||||||||||| ||
Sbjct 1141 GGATATGGCGCCTGGTTACCATCACAAAGGGGTTTGCCGTGCTGGGCTTCTTGCTCTCGA 1200
Query 1447 TGATGAAAATTCTGAAGATTTGGAAGAA-GAAACACACGATGAAGAAGATAATACTTTGA 1505
||||||||||||||||||||||||| || || ||||| ||||| || || |||||||| |
Sbjct 1201 TGATGAAAATTCTGAAGATTTGGAA-AATGATACACATGATGAGGACGACAATACTTTAA 1259
Query 1506 GCTATTCAGACCTTACCAGGAAAGAGAAGAGGACACGGATGAATGGAGGTGGAGAGACTG 1565
|||| |||||||||||||||||||||||||||| ||||||||||||||| ||||||||||
Sbjct 1260 GCTACTCAGACCTTACCAGGAAAGAGAAGAGGATACGGATGAATGGAGGGGGAGAGACTG 1319
Query 1566 AAAACCGCGAAGAGGATG-TGAATGGAGTATCGAAGAGATATAATATGTGGAAGAATGGA 1624
|||||| |||||||||| | |||||||||| |||||||| ||||||||||| ||||||
Sbjct 1320 AAAACCAAGAAGAGGATGCT-AATGGAGTATTAAAGAGATACAATATGTGGAAAAATGGA 1378
Query 1625 TTTTCATATGATATCGATTTCCTCGCTTCATTTCTTGATAAAGAAAGAGATCATTACAAT 1684
|| || ||| |||| |||||||| |||||||||||||||||||||||||| ||||| |||
Sbjct 1379 TTCTCGTATAATATTGATTTCCTGGCTTCATTTCTTGATAAAGAAAGAGACCATTATAAT 1438
Query 1685 TTCCCATGGTCAATGGGGAACTCTGTAGGCCAACGAGAAATGAGAGCCTGGCTATCCAAG 1744
||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct 1439 TTCCCATGGTCAATGGGGAACTCTGTAGGTCAACGAGAAATGAGAGCCTGGCTATCCAAG 1498
Query 1745 CTTTGGG-TTCTGAAGCCTGAGATGAGAGAACTAATATGGAAGGGAGCATGCATTGCTTT 1803
||||||| || |||||||||||||||||| | ||||||||||||||||||||||||||||
Sbjct 1499 CTTTGGGCTT-TGAAGCCTGAGATGAGAGGATTAATATGGAAGGGAGCATGCATTGCTTT 1557
Query 1804 AAATGCTGAGAAATGGTTGCGATGCCTAGAGGAAGTATGTACTTTCCACAACTTGCCGTT 1863
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1558 AAATGCTGAGAAATGGTTGCGATGCCTAGAGGAAGTATGTACTTTCCACAACTTGCCGTT 1617
Query 1864 GGTTACCGAAGATGAAAAGCTTCCAGTTGGAACTGGCAGCAACCCT 1909
||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1618 GGTTACCGAAGATGAAAAGCTTCCAGTTGGAACTGGCAGCAACCCT 1663
Score = 1541 bits (834), Expect = 0.0
Identities = 937/987 (95%), Gaps = 5/987 (1%)
Strand=Plus/Plus
Query 1991 CTTGAGTTTTATGACATTCTTGGCCGGGCTGATTCTCCTTTGAAAACACATATTCCTGAA 2050
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1664 CTTGAGTTTTATGACATTCTTGGCCGGGCTGATTCTCCTTTGAAAACACATATTCCTGAA 1723
Query 2051 GTTCTAGCAAGCGGGATTCTTTTCTTCGAAAAAGGATCTTACAAAGTTGTCCCTTGGGAT 2110
||||||| ||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct 1724 GTTCTAGAAAGCGGGATTCTTTTCTTCGAAAAAGGATCTTACAAAGTTGTCCCCTGGGAT 1783
Query 2111 GGCAAGAGAATCCCAGATATTATCTCTAGCTCCAGTTTCGATTTTGATGCATCCATGTTA 2170
||||||||||||||||| |||||||||||||||| ||||||||||||||||||||||||
Sbjct 1784 GGCAAGAGAATCCCAGACATTATCTCTAGCTCCAATTTCGATTTTGATGCATCCATGTTG 1843
Query 2171 AACAGCGAATTCCCATTTGGTATTTGGAATAAAACGCTACGTGAACATAAAAACCAGGGG 2230
||||||||||||||||||||||||||||| ||||| ||||||||||||| ||||||||||
Sbjct 1844 AACAGCGAATTCCCATTTGGTATTTGGAACAAAACACTACGTGAACATAGAAACCAGGGG 1903
Query 2231 AAGCCAGCACCCGATTCTTTTGGTTCATTGAGTTCACATGTTTGGCCATATATTATAACC 2290
||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct 1904 AAGCCAGCACCCGATTCTTTTGGTTCATTGAGTTCACATGTTTGGCCGTATATTATAACC 1963
Query 2291 AAAAGATGCAAAGGGAAGATTTTTGCCCAACTAAGAGATGATCTAACCTGGAACGACGCT 2350
||||||||||||||||||||||| ||||||||||||||||||||||| |||||||| |||
Sbjct 1964 AAAAGATGCAAAGGGAAGATTTTCGCCCAACTAAGAGATGATCTAACGTGGAACGATGCT 2023
Query 2351 CAGAACCTGGCTTTCTTTCTCGGACAACAACTACGCAACCTTCATCTACTTCCATATCCA 2410
|||||| |||||| |||||| |||||||||||||||||||||||||||||||||||||||
Sbjct 2024 CAGAACTTGGCTTCCTTTCTGGGACAACAACTACGCAACCTTCATCTACTTCCATATCCA 2083
Query 2411 CCGGTCACACGTCCGGAGTTGTTGAATGTGAATGCTGTTCATGAGGAGTTGAACATTCCA 2470
|| |||||||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct 2084 CCAGTCACACGTCCGGAGTTGTTGAATATGAATGCTGTTCATGAGGAGTTGAACATTCCA 2143
Query 2471 GCAGAATGGAAAGTTTTTGTCGATGCTCTGTGCCAAAAGAAGAAGGACGTCACTAGTCGT 2530
||||||||||||||||| |||||||||||||||||||||||||| |||||||||||||||
Sbjct 2144 GCAGAATGGAAAGTTTTCGTCGATGCTCTGTGCCAAAAGAAGAAAGACGTCACTAGTCGT 2203
Query 2531 CTGGAAAACTGGGGAAATCCGATACCTCGGGCTCTGATGACCAAGATAGACGAATACATT 2590
|||||||||||||||||||| |||||||| |||||||||||||| |||||||||||||||
Sbjct 2204 CTGGAAAACTGGGGAAATCCTATACCTCGTGCTCTGATGACCAAAATAGACGAATACATT 2263
Query 2591 CCCGATGACTTTTTTGTAGATTTACTCCACGTCTTCAAGGAGACAAATGGTGGAGATGAA 2650
|| |||||||||||||||||||||||| |||| |||||||| ||||||||||||| |||
Sbjct 2264 CCTGATGACTTTTTTGTAGATTTACTCAACGTTTTCAAGGACCCAAATGGTGGAGACGAA 2323
Query 2651 ATCAAGCCCTGCACCTGGATACACTCAGACGTAATGGATGACAACATTCACATGGAACCA 2710
| ||| |||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct 2324 AGCAAACCCTGCACCTGGATACACTCAGACGTCATGGATGACAACATTCACATGGAACCA 2383
Query 2711 TACGCAGATGATTCAGTTGATGGTCAACACAACTCATGGCGTCCCAGTCATATTCTTGAC 2770
|| |||||||||||||||||||||||||||| | ||||||||||||||||||||| |||
Sbjct 2384 TATTCAGATGATTCAGTTGATGGTCAACACAATTTATGGCGTCCCAGTCATATTCTCGAC 2443
Query 2771 TTCAGCGATTTAACCATAGGAGATCCCATCTGCGACTTGATACCAATATACTTGGACGTC 2830
|| ||||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2444 TTTAGCGATTTATCCATAGGAGATCCCATCTGCGACTTGATACCAATATACTTGGACGTC 2503
Query 2831 TTTAGAGGAGACGCTGATCTTCTT-AAGAAGCTTCTAGAAAATTATGGACTTCCATTAAT 2889
||||||||||||||||||||| || |||||||||||||||| ||| ||||||||||||||
Sbjct 2504 TTTAGAGGAGACGCTGATCTT-TTCAAGAAGCTTCTAGAAAGTTACGGACTTCCATTAAT 2562
Query 2890 CAGAAGTAGATCTTC--AG-AGAACGGAACAACAAAAACAGCAGACAGTACGAGGAAGAA 2946
|||||||||||| | || |||||||||||||||||||| |||||||||||||||||||
Sbjct 2563 CAGAAGTAGATCCCCGGAGGAGAACGGAACAACAAAAACAACAGACAGTACGAGGAAGAA 2622
Query 2947 AGTATTGTCTCCATCCTACCGTACAAT 2973
|||||||| ||| ||||||||||||||
Sbjct 2623 AGTATTGTGTCCTTCCTACCGTACAAT 2649
Score = 137 bits (74), Expect = 4e-31
Identities = 78/80 (98%), Gaps = 0/80 (0%)
Strand=Plus/Plus
Query 3022 TATTTGGGACGAACTTCGGACTGCTGAATCATGGGAACAAGTTGAGCAAACTGTTTGGAG 3081
|||||||||||||||||| || ||||||||||||||||||||||||||||||||||||||
Sbjct 2650 TATTTGGGACGAACTTCGTACAGCTGAATCATGGGAACAAGTTGAGCAAACTGTTTGGAG 2709
Query 3082 TCTACTTAACACCTACTAAT 3101
||||||||||||||||||||
Sbjct 2710 TCTACTTAACACCTACTAAT 2729
> Ahg359220 jgi|Araly1|359220|fgenesh1_pg.C_scaffold_60000001
Length=2235
Score = 1535 bits (831), Expect = 0.0
Identities = 950/1008 (94%), Gaps = 5/1008 (0%)
Strand=Plus/Plus
Query 783 ATGGTGAAGTCCCGTTTAGAATATCTCAGAGGAGCCCCA-ACAAAATTTCCATGAAGTTC 841
||||||||||||| |||||||||||||||||||| |||| || ||||||||||||||||
Sbjct 1 ATGGTGAAGTCCCTTTTAGAATATCTCAGAGGAGTCCCAGACTCAATTTCCATGAAGTTC 60
Query 842 AAGGATTACATCGCATATATGAAAACTCAGCGGGATGAAGATCCTCTATACGTTTTCGAT 901
|||||||||||| | ||||||||||| |||||||||||||||||||||||||||||||||
Sbjct 61 AAGGATTACATCTCGTATATGAAAACCCAGCGGGATGAAGATCCTCTATACGTTTTCGAT 120
Query 902 GACAAGTTTGGAGAAGCTGCTCCAGAATTATTGAAAGACTATAGTGTGCCCCATTTGTTT 961
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 121 GACAAGTTTGGAGAAGCTGCTCCAGAATTATTGAAAGACTATAGTGTGCCCCATTTGTTT 180
Query 962 CAAGAAGATTGGTTTGAGATCTTAGACAAGGAAAGTCGTCCTCCATACAGATGGCTTATA 1021
|||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct 181 CAAGAAGATTGGTTTGAGATCTTAGACAAGGAAAGTCGTCCTCCGTACAGATGGCTTATA 240
Query 1022 GTTGGTCCGGAGAGGTCTGGTGCATCTTGGCATGTTGACCCAGCTCTTACCAGCGCCTGG 1081
|| |||||||||||||||||||||||||||||||| || |||||||||||||||||||||
Sbjct 241 GTCGGTCCGGAGAGGTCTGGTGCATCTTGGCATGTCGATCCAGCTCTTACCAGCGCCTGG 300
Query 1082 AACACCCTGCTTTGCGGTCGGAAAAGGTGGGCATTGTATCCCCCTGGAAAAGTGCCTCTA 1141
||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct 301 AACACCCTGCTTTGCGGTCGGAAAAGGTGGGCATTGTATCCCCCTGGAAAAGTGCCTTTA 360
Query 1142 GGTGTTACAGTCCATGTCAATGAAGATGATGGTGATGTCAGCATTGATACACCCTCATCT 1201
||||||||||| ||||| ||||||||||| |||||||||||||| || || |||||||||
Sbjct 361 GGTGTTACAGTTCATGTAAATGAAGATGACGGTGATGTCAGCATCGACACCCCCTCATCT 420
Query 1202 CTGCAGTGGTGGCTAGACTATTATCCCCTTCTTGCGGACGAAGACAAACCGATTGAGTGC 1261
||||||||||||||||||||||||||||| |||||||||||||||||||| |||||||||
Sbjct 421 CTGCAGTGGTGGCTAGACTATTATCCCCTCCTTGCGGACGAAGACAAACCAATTGAGTGC 480
Query 1262 ACACTACTACCTGGCGAAACGATTTATGTTCCAAGTGGTTGGTGGCACTGTATCCTTAAT 1321
||||||||| |||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct 481 ACACTACTAGCTGGTGAAACGATTTATGTTCCAAGTGGTTGGTGGCACTGTATCCTTAAT 540
Query 1322 CTTGAACCAACAGTGGCTGTTACCCAGAATTTTGTGAACAAAGAAAACTTTGGGTTCGTG 1381
|||||||||||||| |||||||||||||||||||||||||||||||| ||||||||||||
Sbjct 541 CTTGAACCAACAGTAGCTGTTACCCAGAATTTTGTGAACAAAGAAAATTTTGGGTTCGTG 600
Query 1382 TGCTTGGATATGGCGCCTGGTTACCATCACAAAGGAGTTTGCCGTGCTGGGCTTCTTGCT 1441
|| |||||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct 601 TGTTTGGATATGGCGCCTGGTTACCATCACAAAGGGGTTTGCCGTGCTGGGCTTCTTGCT 660
Query 1442 CTTGATGATGAAAATTCTGAAGATTTGGAAGAA-GAAACACACGATGAAGAAGATAATAC 1500
|| ||||||||||||||||||||||||||| || || ||||| ||||| || || |||||
Sbjct 661 CTCGATGATGAAAATTCTGAAGATTTGGAA-AATGATACACATGATGAGGACGACAATAC 719
Query 1501 TTTGAGCTATTCAGACCTTACCAGGAAAGAGAAGAGGACACGGATGAATGGAGGTGGAGA 1560
||| ||||| |||||||||||||||||||||||||||| ||||||||||||||| |||||
Sbjct 720 TTTAAGCTACTCAGACCTTACCAGGAAAGAGAAGAGGATACGGATGAATGGAGGGGGAGA 779
Query 1561 GACTGAAAACCGCGAAGAGGATG-TGAATGGAGTATCGAAGAGATATAATATGTGGAAGA 1619
||||||||||| |||||||||| | |||||||||| |||||||| ||||||||||| |
Sbjct 780 GACTGAAAACCAAGAAGAGGATGCT-AATGGAGTATTAAAGAGATACAATATGTGGAAAA 838
Query 1620 ATGGATTTTCATATGATATCGATTTCCTCGCTTCATTTCTTGATAAAGAAAGAGATCATT 1679
||||||| || ||| |||| |||||||| |||||||||||||||||||||||||| ||||
Sbjct 839 ATGGATTCTCGTATAATATTGATTTCCTGGCTTCATTTCTTGATAAAGAAAGAGACCATT 898
Query 1680 ACAATTTCCCATGGTCAATGGGGAACTCTGTAGGCCAACGAGAAATGAGAGCCTGGCTAT 1739
| |||||||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct 899 ATAATTTCCCATGGTCAATGGGGAACTCTGTAGGTCAACGAGAAATGAGAGCCTGGCTAT 958
Query 1740 CCAAGCTTTGGGTTCTGAAGCCTGAGATGAGAGAACTAATATGGAAGG 1787
|||||||| ||| | |||||||||||||||||||||||||||||||||
Sbjct 959 CCAAGCTTAGGGCTATGAAGCCTGAGATGAGAGAACTAATATGGAAGG 1006
Score = 1441 bits (780), Expect = 0.0
Identities = 900/957 (94%), Gaps = 11/957 (1%)
Strand=Plus/Plus
Query 1989 AGCTTGAGTTTTATGACATTCTTGGCCGGGCTGATTCTCCTTTGAAAACACATATTCCTG 2048
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1163 AGCTTGAGTTTTATGACATTCTTGGCCGGGCTGATTCTCCTTTGAAAACACATATTCCTG 1222
Query 2049 AAGTTCTAGCAAGCGGGATTCTTTTCTTCGAAAAAGGATCTTACAAAGTTGTCCCTTGGG 2108
||||||||| ||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct 1223 AAGTTCTAGAAAGCGGGATTCTTTTCTTCGAAAAAGGATCTTACAAAGTTGTCCCCTGGG 1282
Query 2109 ATGGCAAGAGAATCCCAGATATTATCTCTAGCTCCAGTTTCGATTTTGATGCATCCATGT 2168
||||||||||||||||||| |||||||||||||||| |||||||||||||||||||||||
Sbjct 1283 ATGGCAAGAGAATCCCAGACATTATCTCTAGCTCCAATTTCGATTTTGATGCATCCATGT 1342
Query 2169 TAAACAGCGAATTCCCATTTGGTATTTGGAATAAAACGCTACGTGAACATAAAAACCAGG 2228
| ||||||||||||||||||||||||||||| ||||| ||||||||||||| ||||||||
Sbjct 1343 TGAACAGCGAATTCCCATTTGGTATTTGGAACAAAACACTACGTGAACATAGAAACCAGG 1402
Query 2229 GGAAGCCAGCACCCG-A-----TTCTTTTGGTTCATTGAGTTCACATGTTTGGCCATATA 2282
||||||||||||||| | |||||| |||||||||||||||||||||||||| ||||
Sbjct 1403 GGAAGCCAGCACCCGCACCCGATTCTTTCGGTTCATTGAGTTCACATGTTTGGCCGTATA 1462
Query 2283 TTATAACCAAAAGATGCAAAGGGAAGATTTTTGCCCAACTAAGAGATGATCTAACCTGGA 2342
||||||||||||||||||||||||||||||| ||||||||||||||||||||||| ||||
Sbjct 1463 TTATAACCAAAAGATGCAAAGGGAAGATTTTCGCCCAACTAAGAGATGATCTAACGTGGA 1522
Query 2343 ACGACGCTCAGAACCTGGCTTTCTTTCTCGGACAACAACTACGCAACCTTCATCTACTTC 2402
|||| ||||||||| |||||| |||||| |||||||||||||||||||||||||||||||
Sbjct 1523 ACGATGCTCAGAACTTGGCTTCCTTTCTGGGACAACAACTACGCAACCTTCATCTACTTC 1582
Query 2403 CATATCCACCGGTCACACGTCCGGAGTTGTTGAATGTGAATGCTGTTCATGAGGAGTTGA 2462
|||||||||| |||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct 1583 CATATCCACCAGTCACACGTCCGGAGTTGTTGAATATGAATGCTGTTCATGAGGAGTTGA 1642
Query 2463 ACATTCCAGCAGAATGGAAAGTTTTTGTCGATGCTCTGTGCCAAAAGAAGAAGGACGTCA 2522
||||||||||||||||||||||||| |||||||||||||||||||||||||| |||||||
Sbjct 1643 ACATTCCAGCAGAATGGAAAGTTTTCGTCGATGCTCTGTGCCAAAAGAAGAAAGACGTCA 1702
Query 2523 CTAGTCGTCTGGAAAACTGGGGAAATCCGATACCTCGGGCTCTGATGACCAAGATAGACG 2582
|||||||||||||||||||||||||||| |||||||| |||||||||||||| |||||||
Sbjct 1703 CTAGTCGTCTGGAAAACTGGGGAAATCCTATACCTCGTGCTCTGATGACCAAAATAGACG 1762
Query 2583 AATACATTCCCGATGACTTTTTTGTAGATTTACTCCACGTCTTCAAGGAGACAAATGGTG 2642
|||||||||| |||||||||||||||||||||||| |||| |||||||| |||||||||
Sbjct 1763 AATACATTCCTGATGACTTTTTTGTAGATTTACTCAACGTTTTCAAGGACCCAAATGGTG 1822
Query 2643 GAGATGAAATCAAGCCCTGCACCTGGATACACTCAGACGTAATGGATGACAACATTCACA 2702
|||| |||| ||| |||||||||||||||||||||||||| |||||||||||||||||||
Sbjct 1823 GAGACGAAAGCAAACCCTGCACCTGGATACACTCAGACGTCATGGATGACAACATTCACA 1882
Query 2703 TGGAACCATACGCAGATGATTCAGTTGATGGTCAACACAACTCATGGCGTCCCAGTCATA 2762
|||||||||| |||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct 1883 TGGAACCATATTCAGATGATTCAGTTGATGGTCAACACAATTCATGGCGTCCCAGTCATA 1942
Query 2763 TTCTTGACTTCAGCGATTTAACCATAGGAGATCCCATCTGCGACTTGATACCAATATACT 2822
|||| ||||| ||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct 1943 TTCTCGACTTTAGCGATTTATCCATAGGAGATCCCATCTGCGACTTGATACCAATATACT 2002
Query 2823 TGGACGTCTTTAGAGGAGACGCTGATCTTCTT-AAGAAGCTTCTAGAAAATTATGGACTT 2881
||||||||||||||||||||||||||||| || |||||||||||||||| ||| || |||
Sbjct 2003 TGGACGTCTTTAGAGGAGACGCTGATCTT-TTCAAGAAGCTTCTAGAAAGTTACGGGCTT 2061
Query 2882 CCATTAATCAGAAGTAGATCTTCAGAG---AACGGAACAACAAAAACAGCAGACAGT 2935
||| |||||||||||||||| | ||| |||||||||||||||||| ||||||||
Sbjct 2062 CCAATAATCAGAAGTAGATCCCCGGAGGGGAACGGAACAACAAAAACAACAGACAGT 2118
Score = 169 bits (91), Expect = 2e-40
Identities = 110/119 (92%), Gaps = 2/119 (2%)
Strand=Plus/Plus
Query 2974 GTGTTACTGTATATTA-CATGAAGAAAATGTGTTGGGTTCAATATTCAGTATTTGGGACG 3032
|||||||||||||||| |||||||| ||||| |||||| |||| ||| ||||||||||||
Sbjct 2117 GTGTTACTGTATATTACCATGAAGAGAATGTTTTGGGTGCAATGTTCGGTATTTGGGACG 2176
Query 3033 AACTTCGGACTGCTGAATCATGGGAACAAGTTGAGCAAA-CTGTTTGGAGTCTACTTAA 3090
||||||| || |||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct 2177 AACTTCGTACAGCTGAATCATGGGAACAAGTTGAGCAAAACTGTTTGGAGTCTACTTAA 2235
Score = 139 bits (75), Expect = 1e-31
Identities = 79/81 (98%), Gaps = 0/81 (0%)
Strand=Plus/Plus
Query 1910 GTTTATCTGTTGTCTGACTATGCGATCAAACTGTTTGTTGAAGGAGGGCTAGAACAATCT 1969
|||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1006 GTTTATCTGTTGTCGGACTATGCGATCAAACTGTTTGTTGAAGGAGGGCTAGAACAATCT 1065
Query 1970 ATGTACGGTCTTGGTACTGAG 1990
|||||||||||||| ||||||
Sbjct 1066 ATGTACGGTCTTGGAACTGAG 1086
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 126655602944
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5