BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT1G78290.2
Length=1517
Score E
Sequences producing significant alignments: (Bits) Value
Ahg909457 jgi|Araly1|909457|Al_scaffold_0002_2538 1635 0.0
Ahg887485 jgi|Araly1|887485|Al_scaffold_0060_2 1607 0.0
> Ahg909457 jgi|Araly1|909457|Al_scaffold_0002_2538
Length=1032
Score = 1635 bits (885), Expect = 0.0
Identities = 984/1033 (95%), Gaps = 2/1033 (0%)
Strand=Plus/Plus
Query 234 ATGGAGAGGTACGAAATAGTGAAGGATATTGGGTCTGGTAACTTCGGAGTAGCAAAGCTT 293
||||||||||| || |||||||||||||||||||||||||| ||||||||||||||||||
Sbjct 1 ATGGAGAGGTATGAGATAGTGAAGGATATTGGGTCTGGTAATTTCGGAGTAGCAAAGCTT 60
Query 294 GTTCGTGACAAATTTTCCAAAGAGCTTTTCGCTGTTAAGTTCATCGAGCGAGGCCAAAAG 353
|||||||| |||||||||||||||||||||||| |||||||||||||| |||||||||||
Sbjct 61 GTTCGTGAGAAATTTTCCAAAGAGCTTTTCGCTATTAAGTTCATCGAGAGAGGCCAAAAG 120
Query 354 ATTGATGAACATGTACAAAGAGAAATCATGAACCATAGGTCGCTGATCCATCCCAATATA 413
|||||||||||||||||||||||||||||||| || ||||| || |||||||||||||||
Sbjct 121 ATTGATGAACATGTACAAAGAGAAATCATGAATCACAGGTCACTCATCCATCCCAATATA 180
Query 414 ATAAGATTCAAGGAGGTTTTATTGACGGCAACACATTTGGCGTTAGTAATGGAATACGCC 473
|||||||||||||||||||| ||||||||||||||||||||| |||||||||||||||||
Sbjct 181 ATAAGATTCAAGGAGGTTTTGTTGACGGCAACACATTTGGCGCTAGTAATGGAATACGCC 240
Query 474 GCCGGAGGAGAACTGTTCGGAAGAATCTGCAGCGCCGGAAGATTCAGTGAAGACGAGGCA 533
|||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct 241 GCCGGAGGAGAACTGTTCGGAAGAATCTGCAGCGCCGGGAGATTCAGTGAAGACGAGGCA 300
Query 534 AGGTTTTTCTTTCAGCAGCTTATATCAGGAGTTAATTACTGTCACAGTCTTCAAATATGC 593
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 301 AGGTTTTTCTTTCAGCAGCTTATATCAGGAGTTAATTACTGTCACAGTCTTCAAATATGC 360
Query 594 CATAGAGATTTAAAGCTAGAGAACACGTTACTTG-ATGGAAGCGAAGCGCCACGTGTAAA 652
|||||||||||||||||||||||||| ||| ||| ||||||| ||||||||||| |||||
Sbjct 361 CATAGAGATTTAAAGCTAGAGAACACTTTA-TTGGATGGAAGTGAAGCGCCACGCGTAAA 419
Query 653 GATTTGCGACTTTGGATATTCAAAATCAGGAGTTCTTCATTCGCAACCAAAGACAACAGT 712
|||||||||||| ||||||||||||||||||||||| ||||||||||||||||| || ||
Sbjct 420 GATTTGCGACTTCGGATATTCAAAATCAGGAGTTCTCCATTCGCAACCAAAGACCACTGT 479
Query 713 AGGAACACCTGCTTACATTGCACCTGAAGTGCTCTCCACGAAAGAGTATGACGGCAAAAT 772
||||||||||||||||||||| |||||||||||||||| |||||||||||||||||||||
Sbjct 480 AGGAACACCTGCTTACATTGCGCCTGAAGTGCTCTCCAAGAAAGAGTATGACGGCAAAAT 539
Query 773 CGCTGATGTTTGGTCTTGTGGAGTCACTTTGTATGTTATGCTTGTTGGTGCTTATCCTTT 832
|||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct 540 CGCTGATGTTTGGTCTTGTGGAGTCACTTTGTATGTCATGCTTGTTGGTGCTTATCCTTT 599
Query 833 TGAAGATCCTTCTGATCCTAAAGATTTTCGGAAGACGATCGGTCGGATTCTCAAAGCTCA 892
||||||||||||||||||||||||||||||||| || ||||||||||||||||||| |||
Sbjct 600 TGAAGATCCTTCTGATCCTAAAGATTTTCGGAAAACCATCGGTCGGATTCTCAAAGTTCA 659
Query 893 GTATGCTATTCCTGATTATGTTCGAGTTTCGGATGAATGCAGACATCTTCTCTCTCGGAT 952
|||| | |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 660 GTATTCCATTCCTGATTATGTTCGAGTTTCGGATGAATGCAGACATCTTCTCTCTCGGAT 719
Query 953 ATTCGTTGCCAACCCTGAAAAGAGAATAACAATAGAGGAGATAAAGAATCATTCTTGGTT 1012
|||| |||||||| ||||||||||||||| |||||||||||||||||||||||||||||
Sbjct 720 ATTCATTGCCAACACTGAAAAGAGAATAAGGATAGAGGAGATAAAGAATCATTCTTGGTT 779
Query 1013 TCTCAAGAACTTGCCGGTAGAGATGTATGAAGGATCATTGATGATGAATGGTCCATCGAC 1072
||||||||| |||||||||||||||| | |||||||||||||||||||||||||||||||
Sbjct 780 TCTCAAGAATTTGCCGGTAGAGATGTCTCAAGGATCATTGATGATGAATGGTCCATCGAC 839
Query 1073 TCAGACAGTAGAAGAGATAGTGTGGATCATTGAAGAAGCTCGGAAACCTATCACCGTAGC 1132
||| ||||| ||||||||||||||||||||||| |||||||||||||| ||||| |||||
Sbjct 840 TCAAACAGTGGAAGAGATAGTGTGGATCATTGAGGAAGCTCGGAAACCGATCACAGTAGC 899
Query 1133 TACTGGACTCGCAGGTGCTGGTGGCTCTGGTGGAAGCAGTAATGGTGCCATTGGAAGTAG 1192
|||||||||| | |||||||||| |||||||||||||||||||||||||||||||||||
Sbjct 900 TACTGGACTCTCCGGTGCTGGTGTCTCTGGTGGAAGCAGTAATGGTGCCATTGGAAGTAC 959
Query 1193 CAGTATGGATCTCGATGACTTGGACACAGATTTCGACGACATCGATACCGCTGATCTCCT 1252
||||||||||||||||||||||||||| ||||| ||||||||||||||||||||||||||
Sbjct 960 CAGTATGGATCTCGATGACTTGGACACCGATTTTGACGACATCGATACCGCTGATCTCCT 1019
Query 1253 TTCCCCTTTGTGA 1265
||||||| |||||
Sbjct 1020 TTCCCCTATGTGA 1032
> Ahg887485 jgi|Araly1|887485|Al_scaffold_0060_2
Length=1026
Score = 1607 bits (870), Expect = 0.0
Identities = 980/1033 (95%), Gaps = 8/1033 (1%)
Strand=Plus/Plus
Query 234 ATGGAGAGGTACGAAATAGTGAAGGATATTGGGTCTGGTAACTTCGGAGTAGCAAAGCTT 293
||||||||||| || |||||||||||||||||||||||||| ||||||||||||||||||
Sbjct 1 ATGGAGAGGTATGAGATAGTGAAGGATATTGGGTCTGGTAATTTCGGAGTAGCAAAGCTT 60
Query 294 GTTCGTGACAAATTTTCCAAAGAGCTTTTCGCTGTTAAGTTCATCGAGCGAGGCCAAAAG 353
|||||||| |||||||||||||||||||||||| |||||||||||||| |||||||||||
Sbjct 61 GTTCGTGAGAAATTTTCCAAAGAGCTTTTCGCTATTAAGTTCATCGAGAGAGGCCAAAAG 120
Query 354 ATTGATGAACATGTACAAAGAGAAATCATGAACCATAGGTCGCTGATCCATCCCAATATA 413
|||||||||||||||||||||||||||||||| || || || || |||||||||||||||
Sbjct 121 ATTGATGAACATGTACAAAGAGAAATCATGAATCACAGATCACTCATCCATCCCAATATA 180
Query 414 ATAAGATTCAAGGAGGTTTTATTGACGGCAACACATTTGGCGTTAGTAATGGAATACGCC 473
|||||||||||||||||||| ||||||||||||||||||||| |||||||||||||||||
Sbjct 181 ATAAGATTCAAGGAGGTTTTGTTGACGGCAACACATTTGGCGCTAGTAATGGAATACGCC 240
Query 474 GCCGGAGGAGAACTGTTCGGAAGAATCTGCAGCGCCGGAAGATTCAGTGAAGACGAGGCA 533
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 241 GCCGGAGGAGAACTGTTCGGAAGAATCTGCAGCGCCGGAAGATTCAGTGAAGACGAGGCA 300
Query 534 AGGTTTTTCTTTCAGCAGCTTATATCAGGAGTTAATTACTGTCACAGTCTTCAAATATGC 593
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 301 AGGTTTTTCTTTCAGCAGCTTATATCAGGAGTTAATTACTGTCACAGTCTTCAAATATGC 360
Query 594 CATAGAGATTTAAAGCTAGAGAACACGTTACTTG-ATGGAAGCGAAGCGCCACGTGTAAA 652
|||||||||||||||||||||||||| || ||| ||||||| |||||||| || |||||
Sbjct 361 CATAGAGATTTAAAGCTAGAGAACACTTTG-TTGGATGGAAGTGAAGCGCCGCGCGTAAA 419
Query 653 GATTTGCGACTTTGGATATTCAAAATCAGGAGTTCTTCATTCGCAACCAAAGACAACAGT 712
||||| |||||| ||||||||||||||||||||||||||||||||||||||||| || ||
Sbjct 420 GATTTACGACTTCGGATATTCAAAATCAGGAGTTCTTCATTCGCAACCAAAGACCACTGT 479
Query 713 AGGAACACCTGCTTACATTGCACCTGAAGTGCTCTCCACGAAAGAGTATGACGGCAAAAT 772
||||||||||||||||||||| |||||||||||||||| |||||||||||||||||||||
Sbjct 480 AGGAACACCTGCTTACATTGCGCCTGAAGTGCTCTCCAAGAAAGAGTATGACGGCAAAAT 539
Query 773 CGCTGATGTTTGGTCTTGTGGAGTCACTTTGTATGTTATGCTTGTTGGTGCTTATCCTTT 832
|||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct 540 CGCTGATGTTTGGTCTTGTGGAGTCACTTTGTATGTCATGCTTGTTGGTGCTTATCCTTT 599
Query 833 TGAAGATCCTTCTGATCCTAAAGATTTTCGGAAGACGATCGGTCGGATTCTCAAAGCTCA 892
||||||||||||||||||||||||||||||||| || |||||||||||||||||||||||
Sbjct 600 TGAAGATCCTTCTGATCCTAAAGATTTTCGGAAAACCATCGGTCGGATTCTCAAAGCTCA 659
Query 893 GTATGCTATTCCTGATTATGTTCGAGTTTCGGATGAATGCAGACATCTTCTCTCTCGGAT 952
|||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 660 GTATTCTATTCCTGATTATGTTCGAGTTTCGGATGAATGCAGACATCTTCTCTCTCGGAT 719
Query 953 ATTCGTTGCCAACCCTGAAAAGAGAATAACAATAGAGGAGATAAAGAATCATTCTTGGTT 1012
|||| |||||||||||||||||||| ||| |||||||||||||||||||||||||||||
Sbjct 720 ATTCATTGCCAACCCTGAAAAGAGAGTAAGGATAGAGGAGATAAAGAATCATTCTTGGTT 779
Query 1013 TCTCAAGAACTTGCCGGTAGAGATGTATGAAGGATCATTGATGATGAATGGTCCATCGAC 1072
||||||||| |||||| | ||| |||||||||||||||||||||||||||||||||
Sbjct 780 TCTCAAGAATTTGCCG--A----TGTCTGAAGGATCATTGATGATGAATGGTCCATCGAC 833
Query 1073 TCAGACAGTAGAAGAGATAGTGTGGATCATTGAAGAAGCTCGGAAACCTATCACCGTAGC 1132
||| ||||| ||||||||||||||||||||||| |||||||||||||| ||||| |||||
Sbjct 834 TCAAACAGTGGAAGAGATAGTGTGGATCATTGAGGAAGCTCGGAAACCGATCACAGTAGC 893
Query 1133 TACTGGACTCGCAGGTGCTGGTGGCTCTGGTGGAAGCAGTAATGGTGCCATTGGAAGTAG 1192
|||||||||| | |||||||||| |||||||||||||||||||||||||||||||||||
Sbjct 894 TACTGGACTCTCCGGTGCTGGTGTCTCTGGTGGAAGCAGTAATGGTGCCATTGGAAGTAC 953
Query 1193 CAGTATGGATCTCGATGACTTGGACACAGATTTCGACGACATCGATACCGCTGATCTCCT 1252
||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct 954 CAGTATGGATCTCGATGACTTGGACACTGATTTCGACGACATCGATACCGCTGATCTCCT 1013
Query 1253 TTCCCCTTTGTGA 1265
||||||| |||||
Sbjct 1014 TTCCCCTATGTGA 1026
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 56792555295
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5