BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT1G78300.1
Length=1325
Score E
Sequences producing significant alignments: (Bits) Value
Ahg476998 jgi|Araly1|476998|fgenesh2_kg.2__2128__AT1G78300.1 1507 0.0
Ahg922661 jgi|Araly1|922661|scaffold_103942.1 632 2e-180
> Ahg476998 jgi|Araly1|476998|fgenesh2_kg.2__2128__AT1G78300.1
Length=1201
Score = 1507 bits (816), Expect = 0.0
Identities = 960/1025 (94%), Gaps = 27/1025 (3%)
Strand=Plus/Plus
Query 130 ACCGTTTCTCTCTTTTTGATCAGATCTCAGATCTTTCCCTCTTTGATTCTTCTTCCTTAG 189
||| |||||||||||||||||||||||||||||||| |||||||| |
Sbjct 85 ACCTTTTCTCTCTTTTTGATCAGATCTCAGATCTTT-TCTCTTTGA------------A- 130
Query 190 ATCGATTCTCTCTAGAAACAACAATGGCG---TCTGGGCGTGAAGAGTTCGTATACATGG 246
||||||||||||||| ||||||||||||| |||| |||||||||||||||||||||||
Sbjct 131 ATCGATTCTCTCTAGGAACAACAATGGCGATTTCTGCGCGTGAAGAGTTCGTATACATGG 190
Query 247 CTAAGCTCGCGGAGCAAGCGGAGAGGTACGAAGAGATGGTAGAGTTTATGGAGAAAGTCT 306
|||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct 191 CTAAGCTCGCGGAGCAAGCGGAGAGGTACGAAGAGATGGTTGAGTTTATGGAGAAAGTCT 250
Query 307 CCGCCGCCGTTGATGGCGATGAACTCACCGTAGAAGAGCGAAATCTTCTCTCCGTCGCTT 366
|||||||||| |||||||||||||||||||| |||||||||||||||||||| |||||||
Sbjct 251 CCGCCGCCGTCGATGGCGATGAACTCACCGTTGAAGAGCGAAATCTTCTCTCTGTCGCTT 310
Query 367 ATAAGAATGTGATTGGTGCTCGCCGTGCCTCGTGGCGTATCATTTCATCGATCGAGCAGA 426
| ||||| |||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct 311 ACAAGAACGTGATTGGTGCTCGCCGTGCCTCGTGGCGTATTATTTCATCGATCGAGCAGA 370
Query 427 AGGAAGAGAGCCGTGGTAACGATGACCACGTCACGGCGATCCGTGAATATAGGTCTAAGA 486
| |||||||| || |||||||||||||||||||||| ||||||||| || ||||||||||
Sbjct 371 AAGAAGAGAGTCGCGGTAACGATGACCACGTCACGGTGATCCGTGATTACAGGTCTAAGA 430
Query 487 TCGAGACGGAACTCTCCGGAATCTGCGACGGAATCCTTAAGTTGCTTGACTCTAGACTCA 546
|||||||||||||||| |||||||||||||||||||| ||||||||||||||||||||||
Sbjct 431 TCGAGACGGAACTCTCTGGAATCTGCGACGGAATCCTCAAGTTGCTTGACTCTAGACTCA 490
Query 547 TCCCTGCCGCTGCTTCTGGTGATTCCAAGGTCTTTTACCTTAAGATGAAGGGAGATTATC 606
|||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct 491 TCCCTGCCGCTGCTTCTGGTGATTCCAAGGTCTTTTACCTGAAGATGAAGGGAGATTATC 550
Query 607 ACAGGTACTTGGCTGAGTTTAAGACTGGTCAAGAGAGGAAAGACGCCGCCGAACATACAC 666
||||||||||||||||||| ||||||||||||||||||||||||||||| ||||| || |
Sbjct 551 ACAGGTACTTGGCTGAGTTCAAGACTGGTCAAGAGAGGAAAGACGCCGCTGAACACACTC 610
Query 667 TCGCCGCTTACAAATCTGCTCAGGATATTGCTAATGCAGAGCTTGCTCCAACACACCCAA 726
|| |||||||||||||||||||||||||||||||||||||||||||||| || |||||||
Sbjct 611 TCTCCGCTTACAAATCTGCTCAGGATATTGCTAATGCAGAGCTTGCTCCTACTCACCCAA 670
Query 727 TTCGTCTTGGTCTTGCATTGAACTTCTCTGTGTTCTATTACGAGATCCTCAATTCTCCTG 786
| ||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct 671 TCCGTCTTGGTCTTGCATTGAACTTCTCTGTGTTCTACTACGAGATCCTCAATTCTCCTG 730
Query 787 ATCGTGCCTGTAACCTCGCCAAACAGGCCTTTGATGAGGCGATTGCAGAGTTGGACACTC 846
||||||| || |||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct 731 ATCGTGCTTGCAACCTCGCCAAACAGGCCTTTGATGAAGCGATTGCAGAGTTGGACACTC 790
Query 847 TTGGTGAAGAGTCATACAAAGACAGTACCTTGATCATGCAGCTTCTTCGTGACAATCTCA 906
||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct 791 TTGGTGAAGAGTCATACAAAGACAGTACCTTGATCATGCAGCTTCTTCGTGACAACCTCA 850
Query 907 CTCTCTGGACATCTGATATGCAGGATGATGCTGCGGATGAGATCAAGGAAGCAGCAGCGC 966
||||||||||||| |||||||||||||||||||||||||| |||||||||||||||||||
Sbjct 851 CTCTCTGGACATCCGATATGCAGGATGATGCTGCGGATGAAATCAAGGAAGCAGCAGCGC 910
Query 967 CAAAACCGACCGAGGAACAGCAGTGATCTTTTGAGTGAAACTGCTAGTTTTCTTCTAGGG 1026
||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct 911 CAAAACCGACCGAGGAACAGCAGTGATCTTTTGAGTGAAACTGCTAGTTTTCT---AGGG 967
Query 1027 TTTGGAATTTCTTCTCTTTCTCGTCCATATGTTTTTCTTAATCCATCTAAGAGGTCGCTC 1086
|||||||||||||||||||| ||||||||||||| ||||||| || |||||||||||||
Sbjct 968 TTTGGAATTTCTTCTCTTTC--GTCCATATGTTTT-CTTAATC-ATGTAAGAGGTCGCTC 1023
Query 1087 TTGCCATTTCGCTC-ATCTTCAAAAGCTTATTCATTCATCATATTTGTGGCAAGTCTGAA 1145
||||||||||||| |||||||| ||||||||||||||||||||||||||||||| |||
Sbjct 1024 TTGCCATTTCGCTTTATCTTCAA--GCTTATTCATTCATCATATTTGTGGCAAGTCCGAA 1081
Query 1146 CCATC 1150
|||||
Sbjct 1082 CCATC 1086
Score = 163 bits (88), Expect = 3e-39
Identities = 110/120 (92%), Gaps = 3/120 (3%)
Strand=Plus/Plus
Query 1189 tcttatttctttGTTGTTATCGATTTCAATGTCTGTGTAATCGAAACTTGCTTTCTTTTC 1248
|||| ||| ||| ||||||||||||||||||||| || ||||||| |||||||| |||||
Sbjct 1085 TCTT-TTT-TTT-TTGTTATCGATTTCAATGTCTATGCAATCGAACCTTGCTTTGTTTTC 1141
Query 1249 TCATCAATTTGAAGATCATAAAGTCTCTTGTCTCTTATCTTGTTGCGTAGATTGATTGTT 1308
||||||||||||||||||||||||||||||||||||||||||||| ||||||| |||||
Sbjct 1142 CCATCAATTTGAAGATCATAAAGTCTCTTGTCTCTTATCTTGTTGCTTAGATTGTTTGTT 1201
Score = 115 bits (62), Expect = 8e-25
Identities = 64/65 (98%), Gaps = 0/65 (0%)
Strand=Plus/Plus
Query 1 AGATTAGATCTTGGTTCCAAATTTCACTCTTTTCCTCTAAAACGCATTTATCACTTTCCC 60
|||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1 AGATTAAATCTTGGTTCCAAATTTCACTCTTTTCCTCTAAAACGCATTTATCACTTTCCC 60
Query 61 TCATT 65
|||||
Sbjct 61 TCATT 65
> Ahg922661 jgi|Araly1|922661|scaffold_103942.1
Length=845
Score = 632 bits (342), Expect = 2e-180
Identities = 631/770 (82%), Gaps = 22/770 (3%)
Strand=Plus/Plus
Query 228 GAAGAGTTCGTATACATGGCTAAGCTCGCGGAGCAAGCGGAGA-GGTACGAAGAGATGGT 286
||||||||||| ||| | || || ||||| || |||||||| | | |||||||| |||||
Sbjct 55 GAAGAGTTCGTTTACCTCGCAAAACTCGCTGAACAAGCGGA-ACGTTACGAAGAAATGGT 113
Query 287 AGAGTTTATGGAGAAAGTCTCCGCCGCCGTTGATGGCGATGAACTCACCGTAGAAGAGCG 346
|| || ||||| |||||| | | ||||| || || ||||||||||| ||||| ||
Sbjct 114 TGAATTCATGGAAAAAGTCGCTGAAGCCGTCGACAAAGACGAACTCACCGTCGAAGAACG 173
Query 347 AAATCTTCTCTCCGTCGCTTATAAGAATGTGATTGGTGCTCGCCGTGCCTCGTGGCGTAT 406
||||| |||||||||||||| || || || || || ||||| ||||| || ||| | ||
Sbjct 174 TAATCTCCTCTCCGTCGCTTACAAAAACGTCATCGGCGCTCGTCGTGCTTCCTGGAGAAT 233
Query 407 CATTTCATCGATCGAGCAGAAGGAAGAGAGCCGTGGTAACGATGACCACGTCACGGCGAT 466
||| || || || || || ||||||||||| ||||||||||||||||| || || ||||
Sbjct 234 CATCTCTTCCATTGAACAAAAGGAAGAGAGTCGTGGTAACGATGACCATGTAACCACGAT 293
Query 467 CCGTGAATATAG--GTCTAAGATCGAGA-CGGAACTCTCCG-GAATCTGCGACGGAATCC 522
|||||| || || | | |||||||| | | || | | || |||||| ||||| || |
Sbjct 294 CCGTGATTACAGAAG-C-AAGATCGA-ATCTGAGTTAT-CGAAAATCTGTGACGGTATTC 349
Query 523 TTAAG-TTGCTTGACT-CTAGACTCATCCCTGCCGCTGCTTCTGGTGATTCCAAGGTCTT 580
||||| || ||||| | ||||||| | || || ||||| ||| ||||| ||||| ||
Sbjct 350 TTAAGCTT-CTTGA-TACTAGACTTGTTCCAGCTTCTGCTAATGGAGATTCGAAGGTTTT 407
Query 581 TTACCTTAAGATGAAGGGAGATTATCACAGGTACTTGGCTGAGTTTAAGACTGGTCAAGA 640
||||||||||||||||||||||||||| ||||| ||||||||||||||||||||||||||
Sbjct 408 TTACCTTAAGATGAAGGGAGATTATCATAGGTATTTGGCTGAGTTTAAGACTGGTCAAGA 467
Query 641 GAGGAAAGACGCCGCCGAACATACACTCGCCGCTTACAAATCTGCTCAGGATATTGCTAA 700
||||||||| || || |||||||| ||| ||||||||||| | |||||||||||||||||
Sbjct 468 GAGGAAAGATGCTGCTGAACATACTCTCACCGCTTACAAAGCCGCTCAGGATATTGCTAA 527
Query 701 TGCAGAGCTTG-CTCCAACACACCCAATTCGTCTTGGTCTTG-CATTGAACTTCTCTGTG 758
| | || ||| ||||||| || || |||||||||||| ||| | |||||||||||||||
Sbjct 528 TTCTGAA-TTGGCTCCAACGCATCCGATTCGTCTTGGT-TTGGCTTTGAACTTCTCTGTG 585
Query 759 TTCTATTACGAGATCCTCAATTCTCCTGATCGTGCCTGTAACCTCGCCAAACAGGCCTTT 818
|| || || ||||| || ||||||||||| ||||| ||||| ||||| || ||||| |||
Sbjct 586 TTTTACTATGAGATTCTTAATTCTCCTGACCGTGCTTGTAATCTCGCTAAGCAGGCGTTT 645
Query 819 GATGAGGCGATTGCAGAGTTGGACACTCTTGGTGAAGAGTCATACAAAGACAGTACCTTG 878
||||| || ||||| |||||||| |||||||| || ||||||||||| || |||||||||
Sbjct 646 GATGAAGCCATTGCTGAGTTGGATACTCTTGGAGAGGAGTCATACAAGGATAGTACCTTG 705
Query 879 ATCATGCAGCTTCTTCGTGACAATCTCACTCTCTGGACATCTGATATGCAGGATGAT-GC 937
|||||||||||||||||||||||||| ||||||||||| ||||| |||||||| || |
Sbjct 706 ATCATGCAGCTTCTTCGTGACAATCTTACTCTCTGGACTTCTGACATGCAGGACGAAAG- 764
Query 938 TGCGGATGAGATCAAGGAAGCAGCAGCGCCAAAACC-GACCGAGGAACAG 986
| |||| |||||||| ||||||||||| ||||| || | | || ||||||
Sbjct 765 TCCGGAGGAGATCAAAGAAGCAGCAGCACCAAAGCCTG-CTGAAGAACAG 813
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 49559792100
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5