BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT1G78310.1
Length=1398
Score E
Sequences producing significant alignments: (Bits) Value
Ahg476999 jgi|Araly1|476999|fgenesh2_kg.2__2129__AT1G78310.1 1744 0.0
> Ahg476999 jgi|Araly1|476999|fgenesh2_kg.2__2129__AT1G78310.1
Length=1291
Score = 1744 bits (944), Expect = 0.0
Identities = 1209/1327 (91%), Gaps = 57/1327 (4%)
Strand=Plus/Plus
Query 29 TTTTCATCATCTTCGTCTTCTCCATTATCTCTCTACCCAAATCTGGCagagaaaaac--- 85
||||||||| ||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct 1 TTTTCATCAGCTTCGTCTTCTCCATTATCTCTCTA-CCAAATCTGGCAGAGAAAAACAAA 59
Query 86 ---aaaagaa--gaagaagaagaaaaaCTTTCGATATGGATAAGAGCTGTAACTCCTCCG 140
|||| || |||||||||||||||||| ||||||||| |||||||||||||||||||
Sbjct 60 AAAAAAAAAACCGAAGAAGAAGAAAAACTTGCGATATGGACAAGAGCTGTAACTCCTCCG 119
Query 141 GCGATTCCTCCGCCGTATCCGCCTCTGCAACGAGTAGTACCGGTAACAATACAACGAACA 200
||||||| ||||||||||| ||||| ||||||||||||||||||||||||||||||||||
Sbjct 120 GCGATTCATCCGCCGTATCTGCCTCCGCAACGAGTAGTACCGGTAACAATACAACGAACA 179
Query 201 GAGATCATTACCTGAGACAACTCAATAAGCTGTCTCATAAGATATCAAAACCGACGAACT 260
|||||||||||||| |||||||||||||||| ||||| || |||||||||||||| ||||
Sbjct 180 GAGATCATTACCTGCGACAACTCAATAAGCTTTCTCACAAAATATCAAAACCGACAAACT 239
Query 261 CTTCCTCCTCCGTCTCCGTC-GCGAATCGTGAAATTGATCTTCCACCTCCTCCACCGCTG 319
| ||||||| |||||||| | | |||||||||||||||||||||| | |
Sbjct 240 CCTCCTCCTTCGTCTCCG-CGGTGAATCGTGAAATTGATCTTCCA--------A----T- 285
Query 320 CAAATCAATCAAGGGAATCTCCATCAACATCAACCTCCTGTTTACAATATCAACAAGAAC 379
| |||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct 286 ----T-AATCAAGGGAATCTCCATCAACATCAGCCTCCTGTTTACAATATCAACAAGAAT 340
Query 380 GATTTCAGAGATGTTGTTCAGAAACTAACCGGTTCACCTGCACATGAACGGATCTCTGCT 439
|||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct 341 GATTTCAGAGATGTTGTTCAGAAACTCACCGGTTCACCTGCACATGAACGGATCTCTGCT 400
Query 440 CCGCCGCAACAACCGATTCATCACCCTAAACCTCAACAGAGTTCGCGTCTACATAGGATC 499
||||||||| ||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct 401 CCGCCGCAAAAACCGATTCATCACCCTAAGCCTCAACAGAGTTCGCGTCTACATAGGATT 460
Query 500 CGTCCTCCTCCTTTGGTTCACGTTATCAATCGTCCTCCTGGTTTGCTAAATGACGCACTT 559
|| |||||||| |||| ||| ||||||||||||||||||||||||||||||||||||||
Sbjct 461 CGCCCTCCTCCGTTGGCTCATGTTATCAATCGTCCTCCTGGTTTGCTAAATGACGCACTC 520
Query 560 ATCCCTCAAGGTTCTCATCACATGAATCAAAACTGGACTGGCGTTGGATTTAACCTTCGA 619
|| ||||||||||||||||||||||||||||||||||| |||| ||||||||||||||||
Sbjct 521 ATTCCTCAAGGTTCTCATCACATGAATCAAAACTGGACCGGCGGTGGATTTAACCTTCGA 580
Query 620 CCAACGGCGCCGCTTTCTCCTCTCCCGCCGTTACCACCGGTTCACGCGGCGGCGGAATCA 679
||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct 581 CCAACGGCGCCGCTTTCTCCTCTCCCGCCGTTACCTCCGGTTCACGCGGCGGCGGAATCT 640
Query 680 CCGGTCTCTTCGTACATGCGGTATCTCCAGAACTCGATGTTCGCAATCGATTCGAATCGG 739
|||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct 641 CCGGTCTCTTCGTACATGCGGTATCTTCAGAACTCGATGTTCGCAATCGATTCGAATCGG 700
Query 740 AAAGAGTTCTCTGGATTATCTCCGTTAGCTCCTTTGGTCTCACCTCGTTGGT----AC-- 793
||||| ||||||||||||||||||||||||||| |||||||||||||||||| ||
Sbjct 701 AAAGATTTCTCTGGATTATCTCCGTTAGCTCCTCTGGTCTCACCTCGTTGGTACCAACAA 760
Query 794 CAACAACAGGAAAACGCTCCACCATCGCAGCATAACAGTTTTCCACCACCACATCCTCCT 853
||||||||||||||||| || || |||||||| |||||| ||||||| ||||||||||||
Sbjct 761 CAACAACAGGAAAACGCACCGCCGTCGCAGCAGAACAGTCTTCCACCGCCACATCCTCCT 820
Query 854 CCTCCTTCCTCTGCTGTTTCGCAGACGGTGCCGACATCGATTCCGGCGCCTCCACTGTTT 913
||||||||| | |||||||||||||||| |||||||||||||||||||||||||| ||||
Sbjct 821 CCTCCTTCCGCCGCTGTTTCGCAGACGGCGCCGACATCGATTCCGGCGCCTCCACCGTTT 880
Query 914 GGATG-TTCAAGTTCGCCTAAATCTCCGTACGGATTACTCTCACCGAGCATACTTTTATC 972
||||| || || ||||||||||||||||||||||||||||| |||||||||||| ||||
Sbjct 881 GGATGTTTGAA-CTCGCCTAAATCTCCGTACGGATTACTCTCTCCGAGCATACTTCTATC 939
Query 973 GCCATCGTCAGGTCAATTAGGGTTCCCTGTATCTCCGACGACGGTGCCGCTTCCTAGCCC 1032
|||| |||| |||||||||||||| || ||||||||||||||||||||||||||||||||
Sbjct 940 GCCAGCGTCCGGTCAATTAGGGTTTCCGGTATCTCCGACGACGGTGCCGCTTCCTAGCCC 999
Query 1033 TAAATACAAAGGTCATTGATCAGAAAATCGGAAACCCTTGTCGGTCAAAGTGAGAAAACG 1092
||||||||||||||||||||||||||| | | ||||||||||||||||| || |||
Sbjct 1000 TAAATACAAAGGTCATTGATCAGAAAA-C-----CTCTTGTCGGTCAAAGTGA-AAGACG 1052
Query 1093 TCGTCGTTTTGACCGTCGCGACAAAATTCCCTTTGTTCTTTTTGTACATCATTAGTGGAG 1152
||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct 1053 TCGTCGTTTTGACCGTCACGACAAAATTCCCTTTGTTCTTTTTGTACATCATTAGTGGAG 1112
Query 1153 AGTGGTGGGATCATTTGtttttttttttGTTAATTAACTCAAAGATTACTTAAA-TCCGt 1211
||||||||||||||||||||||||| ||||||||||||||| |||||||||| |||||
Sbjct 1113 --TGGTGGGATCATTTGTTTTTTTTTT-GTTAATTAACTCAAAAATTACTTAAAATCCGT 1169
Query 1212 tttttttttta--ctttcttttgttttCATGGTTTGTTCATGTTAGAAACAAAGAAGACT 1269
||||||||||| |||||||||||| | ||| ||||||||||||||||||||||| ||
Sbjct 1170 TTTTTTTTTTATACTTTCTTTTGTTCT-ATG-TTTGTTCATGTTAGAAACAAAGA---CT 1224
Query 1270 AGGAAAAAGAAAGGAATACACTTTTGCAACTCTATTCAATT-T-TTATAAGTTTGCCATT 1327
|||||||||||| ||||||||||||||||||||||| |||| | |||||||||||| |||
Sbjct 1225 AGGAAAAAGAAACGAATACACTTTTGCAACTCTATTGAATTCTCTTATAAGTTTGCAATT 1284
Query 1328 ATGATTT 1334
|| ||||
Sbjct 1285 ATCATTT 1291
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 52259816140
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5