BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: halleri_transcript_ahg.fa
           32,672 sequences; 38,939,717 total letters



Query= AT1G78320.1

Length=823
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  Ahg927239 jgi|Araly1|927239|scaffold_202800.1                        647    0.0  


> Ahg927239 jgi|Araly1|927239|scaffold_202800.1
Length=455

 Score =  647 bits (350),  Expect = 0.0
 Identities = 416/447 (93%), Gaps = 7/447 (2%)
 Strand=Plus/Plus

Query  2    CACCGACAGCTAAAAATGGAGGAAGAGATTATCCTATTGGATTATTGGGCGAGTATGTAC  61
            ||||| ||||||||||||| |||||||||||||||||| ||||| ||||||||||||| |
Sbjct  7    CACCGCCAGCTAAAAATGGCGGAAGAGATTATCCTATTAGATTACTGGGCGAGTATGTTC  66

Query  62   GGGATGAGGACAAGGATTGCTTTGGAGGAGAAAAAAGTGAAATATGAGTATAGAGAAGAA  121
            |||||||||||||||||||||||||||||||||  |||||||||||||||||||||||||
Sbjct  67   GGGATGAGGACAAGGATTGCTTTGGAGGAGAAAGGAGTGAAATATGAGTATAGAGAAGAA  126

Query  122  GATCTGAGTAACAAAAGCCCTTTACTTCTTCAGATGAACCCTATTCACAAGAAGATTCCG  181
            |||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct  127  GATCTGAGTAACAAAAGCCCTTTACTTCTTGAGATGAACCCTATTCACAAGAAGATTCCG  186

Query  182  GTTTTAATTCATGAAGGTAAACCGATCTGCGAATCGATAATCCAAGTTCAGTATATCGAC  241
            ||||| || ||| ||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct  187  GTTTTGATCCATAAAGGTAAACCGATCTGCGAATCGCTAATCCAAGTTCAGTATATCGAC  246

Query  242  GAGCTTTGGCCTGACACAAACCCGATTCTTCCTTCAGATCCTTACCAGAGAGCTCAAGCT  301
            ||||| ||||| |||||||||||||||| |||||| ||||||||||||||||||||||||
Sbjct  247  GAGCTCTGGCCCGACACAAACCCGATTCATCCTTCGGATCCTTACCAGAGAGCTCAAGCT  306

Query  302  AGATTTTGGGCAGATTACATCGACAAGAAGACATACGTGCCATGCAAGGCATTATGGTCA  361
            |||||||||||||||||||| || |||||||||||||| ||||||||||| |||||||||
Sbjct  307  AGATTTTGGGCAGATTACATTGATAAGAAGACATACGTACCATGCAAGGCTTTATGGTCA  366

Query  362  GAATCAGGGGAGAAACAAGAGGCAGCGAAGATAGAGTTTATAGAAGTACTCAAGA--CA-  418
            ||| |||||||||||||||||||||||||||| ||||| || |||||||||||||  || 
Sbjct  367  GAAACAGGGGAGAAACAAGAGGCAGCGAAGATGGAGTTCATTGAAGTACTCAAGAGTCAA  426

Query  419  --C--TTGATTCAGAGCTTGGAGACAA  441
              |  ||||||||||||||||||||||
Sbjct  427  GACACTTGATTCAGAGCTTGGAGACAA  453



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 30422087766


  Database: halleri_transcript_ahg.fa
    Posted date:  Sep 25, 2014  2:02 AM
  Number of letters in database: 38,939,717
  Number of sequences in database:  32,672



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5