BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT1G78340.1
Length=877
Score E
Sequences producing significant alignments: (Bits) Value
Ahg477001 jgi|Araly1|477001|fgenesh2_kg.2__2131__AT1G78340.1 1195 0.0
Ahg316741 jgi|Araly1|316741|fgenesh1_pm.C_scaffold_2001774 298 5e-80
Ahg911524 jgi|Araly1|911524|Al_scaffold_0001_1778 265 5e-70
Ahg471922 jgi|Araly1|471922|fgenesh2_kg.1__1876__AT1G17190.1 228 6e-59
> Ahg477001 jgi|Araly1|477001|fgenesh2_kg.2__2131__AT1G78340.1
Length=852
Score = 1195 bits (647), Expect = 0.0
Identities = 799/870 (92%), Gaps = 20/870 (2%)
Strand=Plus/Plus
Query 1 ATCAGCGATTGGAGTATAGAAAAGGTTTAAGCAAAATCCATCAAAGAAGAGTTCCTT-TT 59
||||||||||| ||||||||||| |||||||||||||| |||||||||||| || || ||
Sbjct 1 ATCAGCGATTGCAGTATAGAAAATGTTTAAGCAAAATCAATCAAAGAAGAGATCATTCTT 60
Query 60 CACAATAATGGCGGATGAAGTGATACTTTTGGATTTTTGGCCGAGTCCATTCGGAGTAag 119
|||||||||||||||||||||||| || ||||||| |||||||||||||||||||||||
Sbjct 61 CACAATAATGGCGGATGAAGTGATCCTCCTGGATTTCTGGCCGAGTCCATTCGGAGTAAG 120
Query 120 agcgagaatcgcgctgagagagaaaggagttgagtttgagtacagagaagagaatctgag 179
||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 121 AGCAAGAATCGCGCTGAGAGAGAAAGGAGTTGAGTTTGAGTACAGAGAAGAGAATCTGAG 180
Query 180 agacaagagCCCTTTGCTTCTCCAGATGAATCCGGTTCACAAGAAGATTCCGGTTCTCAT 239
||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct 181 AGACAAGAGCCCTTTGCTTCTCCAGATGAATCCGGTTTACAAGAAGATTCCGGTTCTCAT 240
Query 240 CCACAATGGTAAACCGGTTTGTGAATCCATGAACGTTGTTCAGTACATCGACGAGGTTTG 299
||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct 241 CCACAATGGTAAACCAGTTTGTGAATCCATGAACGTTGTTCAGTACATCGACGAGGTTTG 300
Query 300 GTCCGACAAAAACCCAATCCTTCCTTCTGATCCTTACCAGAGAGCTCAAGCCAGATTTTG 359
||||||||||||||| ||||| ||||| ||||||||||||||||||||||||||||||||
Sbjct 301 GTCCGACAAAAACCCTATCCTCCCTTCCGATCCTTACCAGAGAGCTCAAGCCAGATTTTG 360
Query 360 GGTTGATTTCGTGGACACCAAGCTGTTTGAGCCAGCGGATAAGATTTGGCAAACGAAAGG 419
||| |||||||| ||||||||||||||||||||||| |||||||| |||||||| |||||
Sbjct 361 GGTCGATTTCGTCGACACCAAGCTGTTTGAGCCAGCAGATAAGATCTGGCAAACTAAAGG 420
Query 420 AGAGGAACAAGAGACAGCCAAGAAAGAGTATATAGAAGCACTCAAGATTCTTGAAACTGA 479
|||||||||||||||||||||||||||||||| |||||||| |||| ||||||| ||||
Sbjct 421 CGAGGAACAAGAGACAGCCAAGAAAGAGTATATTGAAGCACTTAAGACTCTTGAATCTGA 480
Query 480 GCTTGGAGACAAACCTTACTTTGGTGGAGATACCTTCGGGTTCGTAGACATTGCCATGAC 539
||||||||||||||||||||||||||||||||| || ||||||||||| |||||||||||
Sbjct 481 GCTTGGAGACAAACCTTACTTTGGTGGAGATACATTTGGGTTCGTAGATATTGCCATGAC 540
Query 540 TGGATATTACAGCTGGTTCGAAGCATCAGAGAAACTAGCTAACTTCAGCATCGAACCAGA 599
|||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct 541 TGGATATTACAGCTGGTTCGAAGCATCAGAGAAATTAGCTAACTTCAGCATCGAACCAGA 600
Query 600 GTGTCCCACACTGATGGCTTCGGCTAAGAGGTGTTTGCAGAGAGAAAGCGTGGTTCAGTC 659
|||||||||||||||||||||||||||| |||||||||||||||||||||||||| ||||
Sbjct 601 GTGTCCCACACTGATGGCTTCGGCTAAGCGGTGTTTGCAGAGAGAAAGCGTGGTTAAGTC 660
Query 660 CCTTCATGATTCTGAGAAAATCCTTGCGTTTGCCTATAAGATTAGGAAGATATACTGTGT 719
||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct 661 TCTTCATGATTCTGAGAAGATCCTTGCGTTTGCCTATAAGATTAGGAAGATATACTGTGT 720
Query 720 CTAAAAGTCTTATTGATTCTTTGAACGaaaaaaaaaGTCTTAGAATTTCATCTCACGTTA 779
||||||||||||||||||| | || | |||| | || | | | | ||||
Sbjct 721 CTAAAAGTCTTATTGATTCCATCAATGT--------GTCTAA-AAGT-C-T-TAACGT-- 766
Query 780 CGTTTCTATGTTCACTGATTTCTATATGATTT-TGTTGTACCTTTCTTTCTATTTTCACC 838
| | |||||||||||| ||| | || | ||| | |||| |||||||||| |||||||||
Sbjct 767 C-T--CTATGTTCACTGGTTTTTTTAAG-TTTATCTTGTCCCTTTCTTTCAATTTTCACC 822
Query 839 AAATAATATTTGTTTCTTGTCACTCAAGAA 868
||||| ||||| |||||||||||||| |||
Sbjct 823 AAATATTATTTATTTCTTGTCACTCACGAA 852
> Ahg316741 jgi|Araly1|316741|fgenesh1_pm.C_scaffold_2001774
Length=1941
Score = 298 bits (161), Expect = 5e-80
Identities = 271/323 (84%), Gaps = 12/323 (4%)
Strand=Plus/Plus
Query 67 ATGGCGGATGAAGTGATACTT-TTGGATTTTTGGCCGAGTCCATTC-GGAGT-Aagagcg 123
|||||| | || ||||| ||| || ||||| ||||||||| ||| ||| | | || ||
Sbjct 1 ATGGCGAACGAGGTGATTCTTCTT-GATTTCTGGCCGAGTATGTTCGGGA-TGAGGA-CG 57
Query 124 agaatcgcgctgagagagaaaggagttgagtttgagtacagagaag-agaatctga-gag 181
|| ||||| |||| |||||||| ||||| |||||||||||||||| || |||| | ||
Sbjct 58 AGGATCGCATTGAGGGAGAAAGGTGTTGAATTTGAGTACAGAGAAGAAG-ATCTAAGGA- 115
Query 182 acaagagCCCTTTGCTTCTCCAGATGAATCCGGTTCACAAGAAGATTCCGGTTCTCATCC 241
||||||| |||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct 116 ACAAGAGTCCTTTGCTTCTCCAGATGAATCCGATTCACAAGAAGATTCCGGTTCTCATCC 175
Query 242 ACAATGGTAAACCGGTTTGTGAATCCATGAACGTTGTTCAGTACATCGACGAGGTTTGGT 301
||||||||||||||||| ||||| || | | ||||||||||| |||||||| ||||
Sbjct 176 ACAATGGTAAACCGGTTAACGAATCTATCATCCAGGTTCAGTACATTGACGAGGTCTGGT 235
Query 302 C-CGACAAAAACCCAATCCTTCCTTCTGATCCTTACCAGAGAGCTCAAGCCAGATTTTGG 360
| | |||| ||||| ||||||||||||||||||||||||||||| || || ||||| |||
Sbjct 236 CTC-ACAAGAACCCTATCCTTCCTTCTGATCCTTACCAGAGAGCCCAGGCTAGATTCTGG 294
Query 361 GTTGATTTCGTGGACACCAAGCT 383
| ||||||| | |||| |||||
Sbjct 295 GCTGATTTCATTGACAAAAAGCT 317
Score = 222 bits (120), Expect = 3e-57
Identities = 255/318 (80%), Gaps = 17/318 (5%)
Strand=Plus/Plus
Query 62 CAATAATGGCGGATGAAGTGATACTTTTGGATTTTTGGCCGAGTCCA--TTCGGAGTAag 119
||| |||||| || |||||||| ||| || |||| |||||||| || |||||| | ||
Sbjct 1193 CAACAATGGCAGAGGAAGTGATCCTTCTGAATTTCTGGCCGAG--CATGTTCGGAATGAG 1250
Query 120 agcga-gaatcgcgctgaga-gagaaaggagttg-agtttgagtacagagaagagaatct 176
| ||| | |||||| | ||| |||||||||| || | | |||||| ||||||||| || |
Sbjct 1251 AACGATG-ATCGCG-TTAGAGGAGAAAGGAG-TGAACTATGAGTATAGAGAAGAGGATGT 1307
Query 177 ga--ga-gacaagag-CCCTTTGCTTCTCCAGATGAATCCGGTTCACAAGAAGATTCCGG 232
|| | ||||||| ||| |||||||| ||||||||||| ||||||| ||||| ||||
Sbjct 1308 GATCAATAACAAGAGTCCC-TTGCTTCTAGAGATGAATCCGATTCACAAAAAGATCCCGG 1366
Query 233 TTCTCATCCACAATGGTAAACCGGTTTGTGAATCCATGAACGTTGTTCAGTACATCGACG 292
| ||||||||||||||||||||||||||||||||||| | | | || ||||| ||||
Sbjct 1367 TACTCATCCACAATGGTAAACCGGTTTGTGAATCCATCATCCAAATCCAATACATAGACG 1426
Query 293 AGGTTTGGTCCGACAAAAACCCAATCCTTCCTTCTGAT-CCTTACCAGAGAGCTCAAGCC 351
| || ||||||||||| |||||| |||| ||| | ||| ||| |||| |||||||||||
Sbjct 1427 AAGTCTGGTCCGACAAGAACCCATTCCTCCCTACGGATTCCT-ACCAAAGAGCTCAAGCT 1485
Query 352 AGATTTTGGGTTGATTTC 369
|||||||| ||||||
Sbjct 1486 TTATTTTGGGCCGATTTC 1503
> Ahg911524 jgi|Araly1|911524|Al_scaffold_0001_1778
Length=594
Score = 265 bits (143), Expect = 5e-70
Identities = 452/597 (76%), Gaps = 38/597 (6%)
Strand=Plus/Plus
Query 67 ATGGCGGATGAAGTGATACTT-TTGGATTTTTGGCCGAGTCCATTCGGAGT-Aagagcga 124
||||| || || ||||| ||| || ||||| ||||||||| || ||| | | || |||
Sbjct 1 ATGGCAGACGAGGTGATTCTTCTT-GATTTCTGGCCGAGTATGTTTGGAATGAGGA-CGA 58
Query 125 gaatcgcgctgag-agagaaaggagt-tgagt-tt-gagtacagagaa-gagaatc--tg 177
| || || || || ||||||| | | | | | || || ||||||||| || ||| ||
Sbjct 59 GGATTGCTCT-AGAAGAGAAA--AATGTCA-TATTCGATTACAGAGAACAAG-ATCTATG 113
Query 178 agagacaag-agCCC-TTTGCTTCTCCAGATGAATCCGGTTCACAAGAAGATTCCGGTTC 235
|| || || ||||| || || ||| |||||||||||||||| ||||| || |||||||
Sbjct 114 -GA-AC-AGAAGCCCGATT-CTCCTCGAGATGAATCCGGTTCATAAGAAAATACCGGTTC 169
Query 236 TCATCCACAATGGTAAACCGGTTTGTGAATC-CATGAACGTTGTTCAGTACATCGACGAG 294
|||||||||||||||||||||| |||||||| | | | | | || |||||||||||
Sbjct 170 TCATCCACAATGGTAAACCGGTCTGTGAATCAC-TCATCCAAATGCAATACATCGACGAA 228
Query 295 GTTTGGTCCGA-CAAAAACCCAATCCTTCCTTCTGATCCTTACCAGAGAGCTCAAGCCAG 353
|||||| || | ||||| ||| | ||||||||||| |||||||| |||||||| ||||
Sbjct 229 GTTTGG-CCTAGCAAAACCCCGCTTCTTCCTTCTGACCCTTACCAAAGAGCTCATGCCAA 287
Query 354 ATTTTGGGTTGATTTCGTGGACACCAAGCTGTTTGAGCCAGCG-GATAAGATTTGGCAAA 412
|||||||| |||||| | |||| ||| ||| || ||||| | | ||||||| |
Sbjct 288 ATTTTGGGGAGATTTCATCGACAAGAAGGTGTATGCTTCAGCGAGGTT-GATTTGGGGAG 346
Query 413 CGAAAGGAGAGGAACAAGAGACAGCCAAGAAAGAGTAT-ATAGA-AGCACTCAAGATTCT 470
||||||| || || || ||| | | ||||| |||| | || || | |||||||| ||
Sbjct 347 CGAAAGGCGAAGAGCATGAGGCGGGGAAGAAGGAGT-TCATCGAGAT-ACTCAAGACACT 404
Query 471 TGAAACTGAGCTTGGAGACAAACCTTACTTTGGTGGAGATACCTTCGGGT-TCGTAGACA 529
|| ||||||||||||||||| |||||||||| || || || ||||| | | || || |
Sbjct 405 AGAGTCTGAGCTTGGAGACAAAACTTACTTTGGAGGGGAAACATTCGGTTAT-GTTGATA 463
Query 530 TTGC-CATGACTGGATATTACAGCTGGTTCGAAGCATCA-GAGAAACTAGCTAACTTCAG 587
|||| | | | ||||| |||||||||||| ||||||| | ||||| | | || ||||
Sbjct 464 TTGCTC-TCATTGGATTTTACAGCTGGTTTGAAGCAT-ATGAGAAGTTTGGGAATTTCAA 521
Query 588 CATCGAACCAGAGTGTCCCACACTGATGGCTTCGGCTAAGAGGTGTTTGCAGAGAGA 644
||| ||| ||||||| | |||||| |||| |||||| || ||| || |||||||
Sbjct 522 CATTGAAGTGGAGTGTCTAAAACTGATTGCTTGGGCTAAAAGATGTGTGAAGAGAGA 578
> Ahg471922 jgi|Araly1|471922|fgenesh2_kg.1__1876__AT1G17190.1
Length=913
Score = 228 bits (123), Expect = 6e-59
Identities = 484/646 (75%), Gaps = 74/646 (11%)
Strand=Plus/Plus
Query 66 AATGGCGGATGAAGTGATACTT-TTGGATTTTTGGCCGAGTCCA--TTC-GGAGT-Aaga 120
||||||||| |||||||| ||| || |||| ||||| || || ||| ||| | | ||
Sbjct 93 AATGGCGGACGAAGTGATTCTTCTT-GATTACTGGCCAAG--CATGTTCGGGA-TGAGGA 148
Query 121 gcg-agaatcgcgctgag-agagaaaggagttgagtttgagtac-a-gagaagagaat-c 175
|| || || || || | |||||||||||| ||| ||||||| | || || || || |
Sbjct 149 -CGAAG-ATGGCTTTG-GCAGAGAAAGGAGTCAAGTATGAGTACAAGGA-AACAG-ATCC 203
Query 176 -tgagagacaagagC-CCTTTGCTTC-TCCAGATGAATCCGGTTCACAAGAAGATTCCGG 232
|| | | |||| | ||||||| || | ||||||| || ||||||||||||||||||
Sbjct 204 ATG-G-GTTAAGA-CTCCTTTGC-TCATAGAGATGAACCCCATTCACAAGAAGATTCCGG 259
Query 233 TTCTCATCCACAATGGTAAACCGGTTTGTGAATC-C--ATGAA-CGTTGTTCAGTACATC 288
||||||||||||| | ||||||| ||||||| || | || | | ||| ||||||||
Sbjct 260 TTCTCATCCACAACGCTAAACCGATTTGTGAGTCTCTTATTCAGC-TTG---AGTACATC 315
Query 289 GACGAGGTTTGGTCCGACAAAAACCCAATCCTTCCTTCTGATCCTTACCAGAGAG-CTCA 347
|| |||||||||||||| | || |||||||||| |||||||||||||||| || ||||
Sbjct 316 GATGAGGTTTGGTCCGATGCATACACAATCCTTCCCTCTGATCCTTACCAGA-AGTCTCA 374
Query 348 AGCCAGATTTTGGGTTGATTTCGTGGACACCAAGCTGTTT--GAGCCAGC--GGATAAGA 403
||| ||||| |||| || ||| | |||| ||| | ||| |||||| | ||| | |
Sbjct 375 AGCTAGATTCTGGGCAGAATTCATCGACAAAAAG-T-TTTACGAGCCATCATGGA-AGG- 430
Query 404 TTTGG-CAAACGAAAGGA-GAGGAACAAGA-GACAGCCAAGAAAGAGTATATAG-AAGCA 459
| ||| ||| | || || || |||| | | |||||||||| || | | | | || ||
Sbjct 431 TATGGGCAA-C-AATGGGCGAAGAACTTGTTG-CAGCCAAGAAGGAAT-TGTTGGAA-CA 485
Query 460 CT-CAAGATTCTTGAAACTGAGCTTGGAGACAAACCTTACTTTGGTGGAGA--TACCTTC 516
| ||||| |||||||| ||||||||||||||| |||||| |||||| || || ||
Sbjct 486 TTTCAAGACACTTGAAACAGAGCTTGGAGACAAATCTTACTATGGTGGTGAAGTAT-TT- 543
Query 517 GGGTTCGTAGACATTGCCAT-GACTGG-ATATTACAGCTGGTTCGAAG-C-ATCAGAGAA 572
|| | |||||||||||| || || ||| ||| |||||||||||| ||| | || |||||
Sbjct 544 GGATACGTAGACATTGC-ATTGA-TGGGATACTACAGCTGGTTC-AAGGCCATG-GAGAA 599
Query 573 ACTAGCT-AACTTCAGCATCGAACCAGAGTGTCCCACACTGA-TGGCTTCGG-CTAAGAG 629
| | | | || ||||| |||||| |||||| ||| | | ||| | | | || | |||||
Sbjct 600 ATTTGGTGAA-TTCAGTATCGAAACAGAGTTTCCTAAATTGACTA-CGT-GGACCAAGAG 656
Query 630 GTGTTTGCAGAGAGAAAGCGTGGTTCAGTCCCTT-CATGATTCTGA 674
|||||| | ||||| || |||||| || | || | |||||||||
Sbjct 657 GTGTTTAAAAAGAGAGAGTGTGGTTAAGGCACTGGC-TGATTCTGA 701
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 32480725284
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5