BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: halleri_transcript_ahg.fa 32,672 sequences; 38,939,717 total letters Query= AT1G78370.1 Length=899 Score E Sequences producing significant alignments: (Bits) Value Ahg316741 jgi|Araly1|316741|fgenesh1_pm.C_scaffold_2001774 660 0.0 > Ahg316741 jgi|Araly1|316741|fgenesh1_pm.C_scaffold_2001774 Length=1941 Score = 660 bits (357), Expect = 0.0 Identities = 396/415 (95%), Gaps = 1/415 (0%) Strand=Plus/Plus Query 184 GAG-AGGAAGATTTCTCGAACAAGAGCCCTTTACTCCTCCAGAGTAATCCCATTCACAAG 242 ||| ||||||||||||||||||||||| ||||||||||||| |||||||||||||||||| Sbjct 757 GAGAAGGAAGATTTCTCGAACAAGAGCGCTTTACTCCTCCAAAGTAATCCCATTCACAAG 816 Query 243 AAAATCCCGGTTCTGGTCCACAACGGTAAACCGGTATGTGAATCTCTTAACGTTGTCCAG 302 ||||||||||||||| ||||||||||||||||||| || |||||||||||||| |||||| Sbjct 817 AAAATCCCGGTTCTGATCCACAACGGTAAACCGGTTTGCGAATCTCTTAACGTCGTCCAG 876 Query 303 TACGTCGACGAGGCTTGGCCCGAGAAGAACCCGTTCTTCCCTTCCGATCCTTACGGGAGA 362 ||||| |||||||| |||||||| |||||||||||||| ||||||||||||||||||||| Sbjct 877 TACGTTGACGAGGCCTGGCCCGAAAAGAACCCGTTCTTTCCTTCCGATCCTTACGGGAGA 936 Query 363 GCTCAGGCTCGATTCTGGGCTGATTTCGTGGACAAGAAGTTCACCGACGCCCAATTCAAG 422 ||||| |||||||| ||||| ||||||||||||||||||||||||||||||||||||||| Sbjct 937 GCTCAAGCTCGATTTTGGGCCGATTTCGTGGACAAGAAGTTCACCGACGCCCAATTCAAG 996 Query 423 GTATGGGGGAAGAAAGGTGAGGAACAAGAAGCAGGCAAGAAGGAATTTATTGAGGCAGTG 482 |||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| Sbjct 997 ATATGGGGGAAGAAAGGTGAGGAACAAGAAGCAGGAAAGAAGGAATTTATTGAGGCAGTG 1056 Query 483 AAGATTCTTGAATCTGAGCTAGGAGATAAACCTTACTTTGGTGGAGATAGCTTTGGGTAT 542 |||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1057 AAGATTCTTGAAACTGAGCTAGGAGATAAACCTTACTTTGGTGGAGATAGCTTTGGGTAT 1116 Query 543 GTAGACATTTCCTTGATTACATTCTCGAGTTGGTTCCAAGCCTATGAGAAGTTTG 597 |||||||||||||||||||||||||| || ||||||||||||||||||||||||| Sbjct 1117 GTAGACATTTCCTTGATTACATTCTCCAGCTGGTTCCAAGCCTATGAGAAGTTTG 1171 Score = 176 bits (95), Expect = 2e-43 Identities = 223/283 (79%), Gaps = 16/283 (6%) Strand=Plus/Plus Query 435 AAAGGTGAGGAACAAGAAGCAGGCA-AGAAGGAATTTATTGAGGCAGTGAAGATTCTTGA 493 ||||||||||| | ||||||| || | ||||| | |||||| | | |||| ||| | Sbjct 1630 AAAGGTGAGGAGCTTGAAGCAGCCACA-AAGGAGTATATTGAAATACTCAAGACACTTCA 1688 Query 494 ATCTGAGCTAGGAGATAAACCTTACTTTGGTGGAGATAGCTTTGGGTATGTAGACATT-T 552 || |||||||||||||||||||||||||||||| |||| || |||| |||||||||| | Sbjct 1689 ATGTGAGCTAGGAGATAAACCTTACTTTGGTGGCGATAAATTCGGGTTTGTAGACATTGT 1748 Query 553 CCTTGATTACATTCT-CGAGTTGGTT-CCAAGCCTATGAGAAGTTTGGTAACTTTAGCAT 610 ||| |||| || || | |||||||| ||| || || |||||||||||||||| ||||| Sbjct 1749 CCT-GATTGGATACTAC-AGTTGGTTTCCA-GCATACCAGAAGTTTGGTAACTTCAGCAT 1805 Query 611 CGAGTCAGAGAG-TCCGAAACTGATCGCTTGGG-CAAAGCGGTGCATGGAGAA-AGAGAG 667 ||| | ||| | || |||||||| ||||||| |||| |||| ||| | || || ||| Sbjct 1806 CGAACCCGAGTGCTCA-AAACTGATGGCTTGGGGCAAAA-GGTGTATGCA-AAGAGCGAG 1862 Query 668 TGTGTCTAAGTCTCTCCCTGACTCTGAGA-AGATTGTTGCATA 709 |||| ||||| || | ||||| || |||| || |||||| ||| Sbjct 1863 TGTGGCTAAGGCTTTGCCTGATTCAGAGAGAG-TTGTTGGATA 1904 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 33319429458 Database: halleri_transcript_ahg.fa Posted date: Sep 25, 2014 2:02 AM Number of letters in database: 38,939,717 Number of sequences in database: 32,672 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5