BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT1G78370.1
Length=899
Score E
Sequences producing significant alignments: (Bits) Value
Ahg316741 jgi|Araly1|316741|fgenesh1_pm.C_scaffold_2001774 660 0.0
> Ahg316741 jgi|Araly1|316741|fgenesh1_pm.C_scaffold_2001774
Length=1941
Score = 660 bits (357), Expect = 0.0
Identities = 396/415 (95%), Gaps = 1/415 (0%)
Strand=Plus/Plus
Query 184 GAG-AGGAAGATTTCTCGAACAAGAGCCCTTTACTCCTCCAGAGTAATCCCATTCACAAG 242
||| ||||||||||||||||||||||| ||||||||||||| ||||||||||||||||||
Sbjct 757 GAGAAGGAAGATTTCTCGAACAAGAGCGCTTTACTCCTCCAAAGTAATCCCATTCACAAG 816
Query 243 AAAATCCCGGTTCTGGTCCACAACGGTAAACCGGTATGTGAATCTCTTAACGTTGTCCAG 302
||||||||||||||| ||||||||||||||||||| || |||||||||||||| ||||||
Sbjct 817 AAAATCCCGGTTCTGATCCACAACGGTAAACCGGTTTGCGAATCTCTTAACGTCGTCCAG 876
Query 303 TACGTCGACGAGGCTTGGCCCGAGAAGAACCCGTTCTTCCCTTCCGATCCTTACGGGAGA 362
||||| |||||||| |||||||| |||||||||||||| |||||||||||||||||||||
Sbjct 877 TACGTTGACGAGGCCTGGCCCGAAAAGAACCCGTTCTTTCCTTCCGATCCTTACGGGAGA 936
Query 363 GCTCAGGCTCGATTCTGGGCTGATTTCGTGGACAAGAAGTTCACCGACGCCCAATTCAAG 422
||||| |||||||| ||||| |||||||||||||||||||||||||||||||||||||||
Sbjct 937 GCTCAAGCTCGATTTTGGGCCGATTTCGTGGACAAGAAGTTCACCGACGCCCAATTCAAG 996
Query 423 GTATGGGGGAAGAAAGGTGAGGAACAAGAAGCAGGCAAGAAGGAATTTATTGAGGCAGTG 482
|||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct 997 ATATGGGGGAAGAAAGGTGAGGAACAAGAAGCAGGAAAGAAGGAATTTATTGAGGCAGTG 1056
Query 483 AAGATTCTTGAATCTGAGCTAGGAGATAAACCTTACTTTGGTGGAGATAGCTTTGGGTAT 542
|||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1057 AAGATTCTTGAAACTGAGCTAGGAGATAAACCTTACTTTGGTGGAGATAGCTTTGGGTAT 1116
Query 543 GTAGACATTTCCTTGATTACATTCTCGAGTTGGTTCCAAGCCTATGAGAAGTTTG 597
|||||||||||||||||||||||||| || |||||||||||||||||||||||||
Sbjct 1117 GTAGACATTTCCTTGATTACATTCTCCAGCTGGTTCCAAGCCTATGAGAAGTTTG 1171
Score = 176 bits (95), Expect = 2e-43
Identities = 223/283 (79%), Gaps = 16/283 (6%)
Strand=Plus/Plus
Query 435 AAAGGTGAGGAACAAGAAGCAGGCA-AGAAGGAATTTATTGAGGCAGTGAAGATTCTTGA 493
||||||||||| | ||||||| || | ||||| | |||||| | | |||| ||| |
Sbjct 1630 AAAGGTGAGGAGCTTGAAGCAGCCACA-AAGGAGTATATTGAAATACTCAAGACACTTCA 1688
Query 494 ATCTGAGCTAGGAGATAAACCTTACTTTGGTGGAGATAGCTTTGGGTATGTAGACATT-T 552
|| |||||||||||||||||||||||||||||| |||| || |||| |||||||||| |
Sbjct 1689 ATGTGAGCTAGGAGATAAACCTTACTTTGGTGGCGATAAATTCGGGTTTGTAGACATTGT 1748
Query 553 CCTTGATTACATTCT-CGAGTTGGTT-CCAAGCCTATGAGAAGTTTGGTAACTTTAGCAT 610
||| |||| || || | |||||||| ||| || || |||||||||||||||| |||||
Sbjct 1749 CCT-GATTGGATACTAC-AGTTGGTTTCCA-GCATACCAGAAGTTTGGTAACTTCAGCAT 1805
Query 611 CGAGTCAGAGAG-TCCGAAACTGATCGCTTGGG-CAAAGCGGTGCATGGAGAA-AGAGAG 667
||| | ||| | || |||||||| ||||||| |||| |||| ||| | || || |||
Sbjct 1806 CGAACCCGAGTGCTCA-AAACTGATGGCTTGGGGCAAAA-GGTGTATGCA-AAGAGCGAG 1862
Query 668 TGTGTCTAAGTCTCTCCCTGACTCTGAGA-AGATTGTTGCATA 709
|||| ||||| || | ||||| || |||| || |||||| |||
Sbjct 1863 TGTGGCTAAGGCTTTGCCTGATTCAGAGAGAG-TTGTTGGATA 1904
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 33319429458
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5