BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: halleri_transcript_ahg.fa 32,672 sequences; 38,939,717 total letters Query= AT1G78390.1 Length=1981 Score E Sequences producing significant alignments: (Bits) Value Ahg952338 jgi|Araly1|952338|scaffold_6000006.1 2719 0.0 Ahg927248 jgi|Araly1|927248|scaffold_202809.1 608 4e-173 > Ahg952338 jgi|Araly1|952338|scaffold_6000006.1 Length=1862 Score = 2719 bits (1472), Expect = 0.0 Identities = 1724/1847 (93%), Gaps = 11/1847 (1%) Strand=Plus/Plus Query 138 CGTTTAATCAAGAATCGACTATGGCTTCTACTACCTTACTTCCTTCTACTTCAACCCAAT 197 ||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1 CGTTTTATCAAGAATCGACTATGGCTTCTACTACCTTACTTCCTTCTACTTCAACCCAAT 60 Query 198 TCCTCGACCGAACTTTCTCAACTTCATCTTCCTCTTCGAGACCTAAACTTCAATCTCTAT 257 | || || ||||||||||||||||||||||| ||||||| |||||| ||||||||| ||| Sbjct 61 TTCTTGATCGAACTTTCTCAACTTCATCTTCTTCTTCGATACCTAATCTTCAATCTTTAT 120 Query 258 CTTTTTCCTCAACACT-TAGAAACAAGAAACTAGTAGTCCCCTGCTATGTTTCTTCCTCC 316 | |||||||| ||||| | | | |||||||||| | |||| |||| ||||||||||||| Sbjct 121 CGTTTTCCTCCACACTCT-GCAGCAAGAAACTA--A-TCCCTTGCTCTGTTTCTTCCTCC 176 Query 317 GTCAACAAAAAATCTTCCGTCTCGTCTTCTCTCCAATCTCCGACATT-CAAACCACCGTC 375 |||| ||||||||||| ||| ||||||||||||| ||| ||||| || ||||| ||| || Sbjct 177 GTCATCAAAAAATCTTACGTTTCGTCTTCTCTCCCATCCCCGAC-TTACAAACAACCCTC 235 Query 376 TTGGAAGAAACTATGTAACGATGTCACCAACTTGATCCCCAAAACGACGAATCAGAATCC 435 ||||||||||||||||||||||||| |||| |||||||| |||||||| ||||||| ||| Sbjct 236 TTGGAAGAAACTATGTAACGATGTCGCCAATTTGATCCCGAAAACGACTAATCAGAGTCC 295 Query 436 AAAATTAAACCCGGTGCAGAGAACCGCCGCTA-TGGTTTTAGACGCGGTGGAAAACGCCA 494 || |||||||| ||| |||||||||||||| | | ||||||||||||||||| ||| | Sbjct 296 AACATTAAACCTGGTACAGAGAACCGCCGCCACT-GTTTTAGACGCGGTGGAGAACATGA 354 Query 495 TGATCTCACACGAGCGCCGCCGTCATCCCCATCCTAAAACGGCGGATCCTGCCGTCCAAA 554 ||||||| ||||| |||||||||||||| | |||||||||||||||||| |||||||||| Sbjct 355 TGATCTCCCACGAACGCCGCCGTCATCCGCTTCCTAAAACGGCGGATCCCGCCGTCCAAA 414 Query 555 TAGCCGGGAACTTCTTCCCGGTACCGGAGAAACCTGTCGTGCATAACCTTCCGGTGACTG 614 ||||||| ||||||||||||||||||||| |||| ||||||||||||||||||||| ||| Sbjct 415 TAGCCGGAAACTTCTTCCCGGTACCGGAGCAACCAGTCGTGCATAACCTTCCGGTGGCTG 474 Query 615 GAACAGTACCAGAATGCATTCAAGGAGTTTACGTCAGAAACGGAGCAAATCCACTTCACA 674 ||||||||||||| |||||||||||||||||||||||||||||||| ||||| ||||||| Sbjct 475 GAACAGTACCAGATTGCATTCAAGGAGTTTACGTCAGAAACGGAGCGAATCCGCTTCACA 534 Query 675 AACCAGTCTCCGGCCACCATTTGTTCGACGGAGACGGTATGGTACACGCTGTCCGGTTCG 734 |||| ||||||| |||||||| |||||||||||||||||||| |||||||| ||||| | Sbjct 535 GACCAATCTCCGGGCACCATTTATTCGACGGAGACGGTATGGTTCACGCTGTTCGGTTTG 594 Query 735 ATAACGGCTCGGTTAGCTACGCTTGTCGGTTTACCGAAACAAACCGGTTGGTTCAAGAAC 794 ||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 595 ATAACGGTTCGGTTAGCTACGCTTGTCGGTTTACCGAAACAAACCGGTTGGTTCAAGAAC 654 Query 795 GTGAATGTGGTCGTCCGGTTTTCCCCAAAGCAATTGGAGAGCTTCACGGACATTTAGGAA 854 | |||| |||||| || ||||||||||||||||||||||||||||||||||||||||||| Sbjct 655 GAGAATTTGGTCGCCCTGTTTTCCCCAAAGCAATTGGAGAGCTTCACGGACATTTAGGAA 714 Query 855 TCGCCAAGCTTATGCTCTTCAATACCCGCGGGCTATTTGGGTTAGTCGACCCGACCGGAG 914 |||||||||||||||||||||| |||||||||||||| |||||||||||||||||| || Sbjct 715 TCGCCAAGCTTATGCTCTTCAACACCCGCGGGCTATTCGGGTTAGTCGACCCGACCCAAG 774 Query 915 GACTCGGTGTCGCTAACGCCGGTTTAGTTTATTTCAATGGTCATCTCTTAGCCATGTCCG 974 |||||||||||||||||||||||||||| ||||||||||||||||||||||| ||||| | Sbjct 775 GACTCGGTGTCGCTAACGCCGGTTTAGTCTATTTCAATGGTCATCTCTTAGCAATGTCTG 834 Query 975 AAGACGATTTACCGTACCATGTCAAAGTTACTCAAACCGGAGATTTAGAAACTTCGGGTC 1034 |||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| Sbjct 835 AAGACGATTTACCGTACCATGTCAAAGTCACTCAAACCGGAGATTTAGAAACTTCGGGTC 894 Query 1035 GGTACGATTTCGACGGTCAGTTAAAATCAACAATGATAGCCCACCCGAAAATCGATCCCG 1094 |||||||||||||||||||||||||||| |||||||||||||||||||| ||||| |||| Sbjct 895 GGTACGATTTCGACGGTCAGTTAAAATCCACAATGATAGCCCACCCGAAGATCGA-CCCG 953 Query 1095 -AAACCCGAGAACTCTTCGCTTTAAGCTACGACGTCGTTTCAAAGCCTTACTTAAAATAC 1153 |||||||||| || |||||||||||||||||||||||||||||||||||| |||||||| Sbjct 954 GAAACCCGAGAGCTATTCGCTTTAAGCTACGACGTCGTTTCAAAGCCTTACCTAAAATAC 1013 Query 1154 TTCAGATTCACATCCGACGGTGAGAAATCACCAGACGTCGAGATTCCGCTTGATCAACCA 1213 |||||||||||||||||||| ||||||||||||||||||||||||||||||||| ||||| Sbjct 1014 TTCAGATTCACATCCGACGGCGAGAAATCACCAGACGTCGAGATTCCGCTTGATGAACCA 1073 Query 1214 ACGATGATCCACGATTTCGCGATCACTGAGAATTTCGTAGTGATTCCAGACCAACAAGTG 1273 |||||||||||||||||||| || ||| |||||||||||||||| ||||||||||||||| Sbjct 1074 ACGATGATCCACGATTTCGCAATTACTAAGAATTTCGTAGTGATCCCAGACCAACAAGTG 1133 Query 1274 GTATTCCGATTGCCGGAGATGATAAGAGGTGGTTCTCCGGTGGTTTACGACGAGAAGAAG 1333 || |||||||||||||||||||| |||||||||||||||||||||||||||||||||||| Sbjct 1134 GTTTTCCGATTGCCGGAGATGATCAGAGGTGGTTCTCCGGTGGTTTACGACGAGAAGAAG 1193 Query 1334 AAATCAAGATTCGGGATTTTGAATAAAAACGCGAAAGATGCTTCGTCGATTCAATGGATC 1393 ||||||||||| ||||||||||||||| |||||||||| ||||||||||||||||||||| Sbjct 1194 AAATCAAGATTTGGGATTTTGAATAAATACGCGAAAGAGGCTTCGTCGATTCAATGGATC 1253 Query 1394 GAAGTACCAGATTGTTTTTGTTTCCATCTATGGAACTCTTGGGAAGAACCAGAAACAGAC 1453 ||||||||||||||||| ||||| ||||| |||||||||||||||||||||||||||||| Sbjct 1254 GAAGTACCAGATTGTTTCTGTTTTCATCTCTGGAACTCTTGGGAAGAACCAGAAACAGAC 1313 Query 1454 GAGGTTGTCGTGATTGGATCATGCATGACGCCACCTGATTCAATTTTCAACGAACACGAC 1513 || |||||||||||||||||||||||||||||||||||||| |||||||||||||||||| Sbjct 1314 GAAGTTGTCGTGATTGGATCATGCATGACGCCACCTGATTCGATTTTCAACGAACACGAC 1373 Query 1514 GAAACACTTCAGAGTGTTTTGTCGGAGATAAGGCTAAACCTTAAAACAGGGGAATCAACA 1573 ||||| ||||| |||||||||||||||||||||||||||| |||||||||||||||||| Sbjct 1374 GAAACGCTTCATTGTGTTTTGTCGGAGATAAGGCTAAACCTGAAAACAGGGGAATCAACA 1433 Query 1574 CGTAGACCGGTTATCTCGGAACAAGTTAATCTCGAAGCTGGTATGGTCAACCGGAATTTA 1633 |||||||||||||| || |||||||||||||||||||| |||||||| |||||||||||| Sbjct 1434 CGTAGACCGGTTATTTCCGAACAAGTTAATCTCGAAGCCGGTATGGTAAACCGGAATTTA 1493 Query 1634 TTAGGTAGAAAAACCCGGTATGCTTATCTGGCTTTAACCGAACCGTGGCCTAAAGTGTCC 1693 ||||||| |||||| |||| ||||||| |||||||||||||||||||||||||||||||| Sbjct 1494 TTAGGTAAAAAAACACGGTTTGCTTATTTGGCTTTAACCGAACCGTGGCCTAAAGTGTCC 1553 Query 1694 GGTTTCGCTAAAGTGGACTTATCGACCGGAGAGATTCGAAAGTATATTTACGGAGAGGGG 1753 ||||||| |||||||||||||||||||||||| |||| ||||||||| || ||||| ||| Sbjct 1554 GGTTTCGTTAAAGTGGACTTATCGACCGGAGATATTCAAAAGTATATATATGGAGATGGG 1613 Query 1754 AAATACGGAGGAGAGCCTCTGTTTCTACCTTCCGGTGACGGAGAAGAAGACGGAGGTTAC 1813 |||||||||||||||||||||||||| |||||||||||||| ||||||||||| |||||| Sbjct 1614 AAATACGGAGGAGAGCCTCTGTTTCTGCCTTCCGGTGACGGTGAAGAAGACGGTGGTTAC 1673 Query 1814 ATAATGGTGTTCGTTCACGACGAGGAGAAGGTGAAATCGGAACTCCAACTCATAAACGCC 1873 || ||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| Sbjct 1674 ATTATGGTGTTCGTTCACGACGAGGAGAAGGTGAAATCGGAACTCCAAATCATAAACGCC 1733 Query 1874 GTTAATATGAAGCTTGAAGCTACCGTAACGCTTCCGTCGAGAGTGCCTTACGGTTTCCAC 1933 |||||||||||||||||||||||||| ||||||||||||||||||||||| ||||||||| Sbjct 1734 GTTAATATGAAGCTTGAAGCTACCGTTACGCTTCCGTCGAGAGTGCCTTATGGTTTCCAC 1793 Query 1934 GGAACGTTCATCAGTAAGGAAGATTTATCGAAGCAAGCTTTGTGTTA 1980 ||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1794 GGAACGTTCATCAGTAAGGAAGATTTATCGAAGCAAGCTTTGTGTTA 1840 > Ahg927248 jgi|Araly1|927248|scaffold_202809.1 Length=408 Score = 608 bits (329), Expect = 4e-173 Identities = 367/386 (95%), Gaps = 0/386 (0%) Strand=Plus/Plus Query 1595 CAAGTTAATCTCGAAGCTGGTATGGTCAACCGGAATTTATTAGGTAGAAAAACCCGGTAT 1654 ||||||||||||||||| |||||||| ||||||||||||||||||| |||||| |||| | Sbjct 1 CAAGTTAATCTCGAAGCCGGTATGGTAAACCGGAATTTATTAGGTAAAAAAACACGGTTT 60 Query 1655 GCTTATCTGGCTTTAACCGAACCGTGGCCTAAAGTGTCCGGTTTCGCTAAAGTGGACTTA 1714 |||||| ||||||||||||||||||||||||||||||||||||||| ||||||||||||| Sbjct 61 GCTTATTTGGCTTTAACCGAACCGTGGCCTAAAGTGTCCGGTTTCGTTAAAGTGGACTTA 120 Query 1715 TCGACCGGAGAGATTCGAAAGTATATTTACGGAGAGGGGAAATACGGAGGAGAGCCTCTG 1774 ||||||||||| |||| ||||||||| || ||||| |||||||||||||||||||||||| Sbjct 121 TCGACCGGAGATATTCAAAAGTATATATATGGAGATGGGAAATACGGAGGAGAGCCTCTG 180 Query 1775 TTTCTACCTTCCGGTGACGGAGAAGAAGACGGAGGTTACATAATGGTGTTCGTTCACGAC 1834 ||||| |||||||||||||| ||||||||||| |||||||| |||||||||||||||||| Sbjct 181 TTTCTGCCTTCCGGTGACGGTGAAGAAGACGGTGGTTACATTATGGTGTTCGTTCACGAC 240 Query 1835 GAGGAGAAGGTGAAATCGGAACTCCAACTCATAAACGCCGTTAATATGAAGCTTGAAGCT 1894 ||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| Sbjct 241 GAGGAGAAGGTGAAATCGGAACTCCAAATCATAAACGCCGTTAATATGAAGCTTGAAGCT 300 Query 1895 ACCGTAACGCTTCCGTCGAGAGTGCCTTACGGTTTCCACGGAACGTTCATCAGTAAGGAA 1954 ||||| ||||||||||||||||||||||| |||||||||||||||||||||||||||||| Sbjct 301 ACCGTTACGCTTCCGTCGAGAGTGCCTTATGGTTTCCACGGAACGTTCATCAGTAAGGAA 360 Query 1955 GATTTATCGAAGCAAGCTTTGTGTTA 1980 |||||||||||||||||||||||||| Sbjct 361 GATTTATCGAAGCAAGCTTTGTGTTA 386 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 74466428975 Database: halleri_transcript_ahg.fa Posted date: Sep 25, 2014 2:02 AM Number of letters in database: 38,939,717 Number of sequences in database: 32,672 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5