BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT1G78390.1
Length=1981
Score E
Sequences producing significant alignments: (Bits) Value
Ahg952338 jgi|Araly1|952338|scaffold_6000006.1 2719 0.0
Ahg927248 jgi|Araly1|927248|scaffold_202809.1 608 4e-173
> Ahg952338 jgi|Araly1|952338|scaffold_6000006.1
Length=1862
Score = 2719 bits (1472), Expect = 0.0
Identities = 1724/1847 (93%), Gaps = 11/1847 (1%)
Strand=Plus/Plus
Query 138 CGTTTAATCAAGAATCGACTATGGCTTCTACTACCTTACTTCCTTCTACTTCAACCCAAT 197
||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1 CGTTTTATCAAGAATCGACTATGGCTTCTACTACCTTACTTCCTTCTACTTCAACCCAAT 60
Query 198 TCCTCGACCGAACTTTCTCAACTTCATCTTCCTCTTCGAGACCTAAACTTCAATCTCTAT 257
| || || ||||||||||||||||||||||| ||||||| |||||| ||||||||| |||
Sbjct 61 TTCTTGATCGAACTTTCTCAACTTCATCTTCTTCTTCGATACCTAATCTTCAATCTTTAT 120
Query 258 CTTTTTCCTCAACACT-TAGAAACAAGAAACTAGTAGTCCCCTGCTATGTTTCTTCCTCC 316
| |||||||| ||||| | | | |||||||||| | |||| |||| |||||||||||||
Sbjct 121 CGTTTTCCTCCACACTCT-GCAGCAAGAAACTA--A-TCCCTTGCTCTGTTTCTTCCTCC 176
Query 317 GTCAACAAAAAATCTTCCGTCTCGTCTTCTCTCCAATCTCCGACATT-CAAACCACCGTC 375
|||| ||||||||||| ||| ||||||||||||| ||| ||||| || ||||| ||| ||
Sbjct 177 GTCATCAAAAAATCTTACGTTTCGTCTTCTCTCCCATCCCCGAC-TTACAAACAACCCTC 235
Query 376 TTGGAAGAAACTATGTAACGATGTCACCAACTTGATCCCCAAAACGACGAATCAGAATCC 435
||||||||||||||||||||||||| |||| |||||||| |||||||| ||||||| |||
Sbjct 236 TTGGAAGAAACTATGTAACGATGTCGCCAATTTGATCCCGAAAACGACTAATCAGAGTCC 295
Query 436 AAAATTAAACCCGGTGCAGAGAACCGCCGCTA-TGGTTTTAGACGCGGTGGAAAACGCCA 494
|| |||||||| ||| |||||||||||||| | | ||||||||||||||||| ||| |
Sbjct 296 AACATTAAACCTGGTACAGAGAACCGCCGCCACT-GTTTTAGACGCGGTGGAGAACATGA 354
Query 495 TGATCTCACACGAGCGCCGCCGTCATCCCCATCCTAAAACGGCGGATCCTGCCGTCCAAA 554
||||||| ||||| |||||||||||||| | |||||||||||||||||| ||||||||||
Sbjct 355 TGATCTCCCACGAACGCCGCCGTCATCCGCTTCCTAAAACGGCGGATCCCGCCGTCCAAA 414
Query 555 TAGCCGGGAACTTCTTCCCGGTACCGGAGAAACCTGTCGTGCATAACCTTCCGGTGACTG 614
||||||| ||||||||||||||||||||| |||| ||||||||||||||||||||| |||
Sbjct 415 TAGCCGGAAACTTCTTCCCGGTACCGGAGCAACCAGTCGTGCATAACCTTCCGGTGGCTG 474
Query 615 GAACAGTACCAGAATGCATTCAAGGAGTTTACGTCAGAAACGGAGCAAATCCACTTCACA 674
||||||||||||| |||||||||||||||||||||||||||||||| ||||| |||||||
Sbjct 475 GAACAGTACCAGATTGCATTCAAGGAGTTTACGTCAGAAACGGAGCGAATCCGCTTCACA 534
Query 675 AACCAGTCTCCGGCCACCATTTGTTCGACGGAGACGGTATGGTACACGCTGTCCGGTTCG 734
|||| ||||||| |||||||| |||||||||||||||||||| |||||||| ||||| |
Sbjct 535 GACCAATCTCCGGGCACCATTTATTCGACGGAGACGGTATGGTTCACGCTGTTCGGTTTG 594
Query 735 ATAACGGCTCGGTTAGCTACGCTTGTCGGTTTACCGAAACAAACCGGTTGGTTCAAGAAC 794
||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 595 ATAACGGTTCGGTTAGCTACGCTTGTCGGTTTACCGAAACAAACCGGTTGGTTCAAGAAC 654
Query 795 GTGAATGTGGTCGTCCGGTTTTCCCCAAAGCAATTGGAGAGCTTCACGGACATTTAGGAA 854
| |||| |||||| || |||||||||||||||||||||||||||||||||||||||||||
Sbjct 655 GAGAATTTGGTCGCCCTGTTTTCCCCAAAGCAATTGGAGAGCTTCACGGACATTTAGGAA 714
Query 855 TCGCCAAGCTTATGCTCTTCAATACCCGCGGGCTATTTGGGTTAGTCGACCCGACCGGAG 914
|||||||||||||||||||||| |||||||||||||| |||||||||||||||||| ||
Sbjct 715 TCGCCAAGCTTATGCTCTTCAACACCCGCGGGCTATTCGGGTTAGTCGACCCGACCCAAG 774
Query 915 GACTCGGTGTCGCTAACGCCGGTTTAGTTTATTTCAATGGTCATCTCTTAGCCATGTCCG 974
|||||||||||||||||||||||||||| ||||||||||||||||||||||| ||||| |
Sbjct 775 GACTCGGTGTCGCTAACGCCGGTTTAGTCTATTTCAATGGTCATCTCTTAGCAATGTCTG 834
Query 975 AAGACGATTTACCGTACCATGTCAAAGTTACTCAAACCGGAGATTTAGAAACTTCGGGTC 1034
|||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct 835 AAGACGATTTACCGTACCATGTCAAAGTCACTCAAACCGGAGATTTAGAAACTTCGGGTC 894
Query 1035 GGTACGATTTCGACGGTCAGTTAAAATCAACAATGATAGCCCACCCGAAAATCGATCCCG 1094
|||||||||||||||||||||||||||| |||||||||||||||||||| ||||| ||||
Sbjct 895 GGTACGATTTCGACGGTCAGTTAAAATCCACAATGATAGCCCACCCGAAGATCGA-CCCG 953
Query 1095 -AAACCCGAGAACTCTTCGCTTTAAGCTACGACGTCGTTTCAAAGCCTTACTTAAAATAC 1153
|||||||||| || |||||||||||||||||||||||||||||||||||| ||||||||
Sbjct 954 GAAACCCGAGAGCTATTCGCTTTAAGCTACGACGTCGTTTCAAAGCCTTACCTAAAATAC 1013
Query 1154 TTCAGATTCACATCCGACGGTGAGAAATCACCAGACGTCGAGATTCCGCTTGATCAACCA 1213
|||||||||||||||||||| ||||||||||||||||||||||||||||||||| |||||
Sbjct 1014 TTCAGATTCACATCCGACGGCGAGAAATCACCAGACGTCGAGATTCCGCTTGATGAACCA 1073
Query 1214 ACGATGATCCACGATTTCGCGATCACTGAGAATTTCGTAGTGATTCCAGACCAACAAGTG 1273
|||||||||||||||||||| || ||| |||||||||||||||| |||||||||||||||
Sbjct 1074 ACGATGATCCACGATTTCGCAATTACTAAGAATTTCGTAGTGATCCCAGACCAACAAGTG 1133
Query 1274 GTATTCCGATTGCCGGAGATGATAAGAGGTGGTTCTCCGGTGGTTTACGACGAGAAGAAG 1333
|| |||||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct 1134 GTTTTCCGATTGCCGGAGATGATCAGAGGTGGTTCTCCGGTGGTTTACGACGAGAAGAAG 1193
Query 1334 AAATCAAGATTCGGGATTTTGAATAAAAACGCGAAAGATGCTTCGTCGATTCAATGGATC 1393
||||||||||| ||||||||||||||| |||||||||| |||||||||||||||||||||
Sbjct 1194 AAATCAAGATTTGGGATTTTGAATAAATACGCGAAAGAGGCTTCGTCGATTCAATGGATC 1253
Query 1394 GAAGTACCAGATTGTTTTTGTTTCCATCTATGGAACTCTTGGGAAGAACCAGAAACAGAC 1453
||||||||||||||||| ||||| ||||| ||||||||||||||||||||||||||||||
Sbjct 1254 GAAGTACCAGATTGTTTCTGTTTTCATCTCTGGAACTCTTGGGAAGAACCAGAAACAGAC 1313
Query 1454 GAGGTTGTCGTGATTGGATCATGCATGACGCCACCTGATTCAATTTTCAACGAACACGAC 1513
|| |||||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct 1314 GAAGTTGTCGTGATTGGATCATGCATGACGCCACCTGATTCGATTTTCAACGAACACGAC 1373
Query 1514 GAAACACTTCAGAGTGTTTTGTCGGAGATAAGGCTAAACCTTAAAACAGGGGAATCAACA 1573
||||| ||||| |||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct 1374 GAAACGCTTCATTGTGTTTTGTCGGAGATAAGGCTAAACCTGAAAACAGGGGAATCAACA 1433
Query 1574 CGTAGACCGGTTATCTCGGAACAAGTTAATCTCGAAGCTGGTATGGTCAACCGGAATTTA 1633
|||||||||||||| || |||||||||||||||||||| |||||||| ||||||||||||
Sbjct 1434 CGTAGACCGGTTATTTCCGAACAAGTTAATCTCGAAGCCGGTATGGTAAACCGGAATTTA 1493
Query 1634 TTAGGTAGAAAAACCCGGTATGCTTATCTGGCTTTAACCGAACCGTGGCCTAAAGTGTCC 1693
||||||| |||||| |||| ||||||| ||||||||||||||||||||||||||||||||
Sbjct 1494 TTAGGTAAAAAAACACGGTTTGCTTATTTGGCTTTAACCGAACCGTGGCCTAAAGTGTCC 1553
Query 1694 GGTTTCGCTAAAGTGGACTTATCGACCGGAGAGATTCGAAAGTATATTTACGGAGAGGGG 1753
||||||| |||||||||||||||||||||||| |||| ||||||||| || ||||| |||
Sbjct 1554 GGTTTCGTTAAAGTGGACTTATCGACCGGAGATATTCAAAAGTATATATATGGAGATGGG 1613
Query 1754 AAATACGGAGGAGAGCCTCTGTTTCTACCTTCCGGTGACGGAGAAGAAGACGGAGGTTAC 1813
|||||||||||||||||||||||||| |||||||||||||| ||||||||||| ||||||
Sbjct 1614 AAATACGGAGGAGAGCCTCTGTTTCTGCCTTCCGGTGACGGTGAAGAAGACGGTGGTTAC 1673
Query 1814 ATAATGGTGTTCGTTCACGACGAGGAGAAGGTGAAATCGGAACTCCAACTCATAAACGCC 1873
|| ||||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct 1674 ATTATGGTGTTCGTTCACGACGAGGAGAAGGTGAAATCGGAACTCCAAATCATAAACGCC 1733
Query 1874 GTTAATATGAAGCTTGAAGCTACCGTAACGCTTCCGTCGAGAGTGCCTTACGGTTTCCAC 1933
|||||||||||||||||||||||||| ||||||||||||||||||||||| |||||||||
Sbjct 1734 GTTAATATGAAGCTTGAAGCTACCGTTACGCTTCCGTCGAGAGTGCCTTATGGTTTCCAC 1793
Query 1934 GGAACGTTCATCAGTAAGGAAGATTTATCGAAGCAAGCTTTGTGTTA 1980
|||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1794 GGAACGTTCATCAGTAAGGAAGATTTATCGAAGCAAGCTTTGTGTTA 1840
> Ahg927248 jgi|Araly1|927248|scaffold_202809.1
Length=408
Score = 608 bits (329), Expect = 4e-173
Identities = 367/386 (95%), Gaps = 0/386 (0%)
Strand=Plus/Plus
Query 1595 CAAGTTAATCTCGAAGCTGGTATGGTCAACCGGAATTTATTAGGTAGAAAAACCCGGTAT 1654
||||||||||||||||| |||||||| ||||||||||||||||||| |||||| |||| |
Sbjct 1 CAAGTTAATCTCGAAGCCGGTATGGTAAACCGGAATTTATTAGGTAAAAAAACACGGTTT 60
Query 1655 GCTTATCTGGCTTTAACCGAACCGTGGCCTAAAGTGTCCGGTTTCGCTAAAGTGGACTTA 1714
|||||| ||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct 61 GCTTATTTGGCTTTAACCGAACCGTGGCCTAAAGTGTCCGGTTTCGTTAAAGTGGACTTA 120
Query 1715 TCGACCGGAGAGATTCGAAAGTATATTTACGGAGAGGGGAAATACGGAGGAGAGCCTCTG 1774
||||||||||| |||| ||||||||| || ||||| ||||||||||||||||||||||||
Sbjct 121 TCGACCGGAGATATTCAAAAGTATATATATGGAGATGGGAAATACGGAGGAGAGCCTCTG 180
Query 1775 TTTCTACCTTCCGGTGACGGAGAAGAAGACGGAGGTTACATAATGGTGTTCGTTCACGAC 1834
||||| |||||||||||||| ||||||||||| |||||||| ||||||||||||||||||
Sbjct 181 TTTCTGCCTTCCGGTGACGGTGAAGAAGACGGTGGTTACATTATGGTGTTCGTTCACGAC 240
Query 1835 GAGGAGAAGGTGAAATCGGAACTCCAACTCATAAACGCCGTTAATATGAAGCTTGAAGCT 1894
||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct 241 GAGGAGAAGGTGAAATCGGAACTCCAAATCATAAACGCCGTTAATATGAAGCTTGAAGCT 300
Query 1895 ACCGTAACGCTTCCGTCGAGAGTGCCTTACGGTTTCCACGGAACGTTCATCAGTAAGGAA 1954
||||| ||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct 301 ACCGTTACGCTTCCGTCGAGAGTGCCTTATGGTTTCCACGGAACGTTCATCAGTAAGGAA 360
Query 1955 GATTTATCGAAGCAAGCTTTGTGTTA 1980
||||||||||||||||||||||||||
Sbjct 361 GATTTATCGAAGCAAGCTTTGTGTTA 386
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 74466428975
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5